mRNA_H-paniculata_contig163.3611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig163.3611.1
Unique NamemRNA_H-paniculata_contig163.3611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: D7FLD7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD7_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.760e-48
Identity = 204/609 (33.50%), Postives = 281/609 (46.14%), Query Frame = 1 
Query:    1 ISLQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETDELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALCPKAFIKLERNAPLLKRTNNAQ--------LTPIHVRRE-SMERARHISEKQGHKENLGVSNVGGTGGSLRDSTHYSIEDVND--------------GEDETIEADHHILSAEDEDCRRSTSEDLRKQPSRIDQECDRGRR--EKQSSSRASIEIRDSGDSGNSMSRKNNSEHRGDASTRGGGDINPDEGEGAPQNESRRRSKTFQGEDREEMCGENYDFSKEISDDIQKRVDREVSATVNEGERREQTKNRERGEVNMVDNIEDGSGKAAYATNGRRRFDSHSSVDGGDDLDEKAC---------------VGKH-----SDNKYAHESGTLHDKLERKPEFRTLDGDESANNLDGNDDLGHKPSQEEDTRHATD-RKEEGGPDHTC----SNQDEERE-LDQCAELEILTPSLEI-TWEKPRRRGTATSRLHRHISRIGEPEDRPDGHLLPPPKEFLSNHSSGSQSTIRRGQDNPPEAKDSGLQLIIKSTRKSRRRSAADLEWGDG 1671
            + LQGYL KEKSK   L GLTGDINKRYF+IQ I+ ++ELALCYYK  N P++RGW+YL+D+TEIAED+DT+I +SAARTLHLYA+TRA+HN WVTG+A LCP AF  L RNA + +  N+ +        LTP  V +  + +R + + + Q +    GV +   T  S   S ++     +D              G+    E  H   S      RR +    RKQ  R D E  RGRR   ++ S       R+  +    +       HRG+   +G                S RR K  QG+      GE+   +K  S D ++  D   S T N     +   +R+ G  +          K+ +        D     D  D+ D   C               VG+      SD        +  D++ +K        +E+   ++   D G  P       H    R+ E  P        SNQDEE+E +D+ A++++  P L+I  WE P +  +ATSRLHRHISR         G + PPPKEFL++  + S ST         E    G   + K T   RRRSAADLEW DG
Sbjct:    5 LKLQGYLMKEKSKLSRLHGLTGDINKRYFKIQSIEGSEELALCYYKKFNVPEIRGWIYLKDVTEIAEDQDTIIVTSAARTLHLYAQTRAQHNLWVTGLAKLCPHAFAILGRNASVRRMENDLRMTSPTDTSLTPAVVDKSFAKDRDKPVIDPQENHSVDGVESSPSTNESDSQSEYFQTARGHDIKRDRNGRHRGQSAGDHGAPEEPHASWSTP----RRDSRNVARKQRHRGDAE--RGRRGGNERVSKGPCHRRREDYEDRRLVRSSGRLVHRGNTCDKG----------------STRRRK--QGQRSRGSGGESV--AKASSHDEEESSDTSASPTRNCRNAGDTRDDRDAGATS----------KSCFTGLPSSASDEDGHEDVADERDLGPCGQYAGRLDEGLNPTSVGEKGSTVSSDMVVVRPPESQDDEMTKKSRAYYSSDNENVETIEL--DEGESPV----VAHIVQVRQPEDNPAPASVPRKSNQDEEKEEVDEEADIDLAVPRLKIGDWEGPHQGQSATSRLHRHISRRDTEAVGFSGGV-PPPKEFLTHKLAESPSTT------DCERNTGGSDGLPKPTTNGRRRSAADLEWNDG 564
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A6H5JEF7_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 8.180e-46
Identity = 193/612 (31.54%), Postives = 277/612 (45.26%), Query Frame = 1 
Query:    1 ISLQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETDELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALCPKAFIKLERNAPLLKRTNNAQLT---------PIHVRRE-SMERARHISEKQGHKENLGVSNVGGTGGSLRDSTHYSIEDVND--------------GEDETIEADHHILSAEDEDCRRSTSEDLRKQPSRIDQECDRGRREKQSSSRASIEIRDSGDSGNSMSRKNNSEHRGDASTRGGGDINPDEGEGAPQNESRRRSKTFQGEDREEMCGENYDFSKEISDDIQKRVDREVSATVNEGERREQTKNRERGEVNMVDNIEDGSGKAAYATNGRRRFDSHSSVDGGDDLDEKAC-------------------VGKHSDNKYA-HESGTLHDKLERKPE---------FRTLDGDESANNLDGNDDLGHKPSQEEDTRHATDRKEEGGPDHTCSNQDEERE-LDQCAELEILTPSLEI-TWEKPRRRGTATSRLHRHISRIGEPEDRPDGHLLPPPKEFLSNHSSGSQSTIRRGQDNPPEAKDSGLQLIIKSTRKSRRRSAADLEWGDG 1671
            + LQGYL KEKSK   L GLTGDINKRYF+IQ I+ ++ELALCYYK  N P++RGW+YL+D+TEIAED+DT+I +SAARTLHLYA+TRA+HN WVTG+  LCP AF  L RNA + +  N+ ++T         P  V +  + +R + +   Q +    G+ +   T  S   S  +     ++              G+ +  E  H + S    D R   S    KQ  R D EC R    ++ S       R   +    +       HRG+   +G                +RRR++  QG+      GE+   +K  S D ++      S T          +N + G     D       K  +        D +   D  D+ D + C                   VG +S +K          D++ +K             T++ DE  N +  ++ +  +P  +  +  +  RK         SNQDEE+E +D+ A++++  P LEI  WE P +  + TSRLHRHISR         G + PPPKEFL++  + S ST     D   +    GL        K   RSAADLEW DG
Sbjct:    5 LKLQGYLMKEKSKLSRLHGLTGDINKRYFKIQSIEGSEELALCYYKKFNVPEIRGWIYLKDVTEIAEDQDTIIVTSAARTLHLYAQTRAQHNLWVTGLVKLCPHAFAMLGRNASVRRMENDLRMTSPTGTSLSTPAVVDKSFAKDRYKAVIGPQENHSVDGIESSPSTNESDSQSESFQTARGHETKRGRNGRHRGQSAGDHQVPEEPHALWSTPRRDSRNVVS----KQRHRGDDECGRRGGNERGSKGPCHRRRGEYEDRRLVRSSGRLVHRGNTCDKGS---------------TRRRNEERQGQRSRGRVGESV--AKANSHDEEESSHTSASPT----------RNCKSGGHTKDDRDAGARSKPCFTGLPASASDENGHEDVPDERDLEPCGQYAGRLDEGLTPTSVEEKVGTNSSDKVVVRPPEPRDDEMTKKSRAFYSSDNENVETIELDERENPVVAHN-VQPRPPDDNPSPASVPRK---------SNQDEEKEEVDEEADIDLAVPRLEIGDWEGPHQGQSVTSRLHRHISRRDTEAVGFSGGV-PPPKEFLTHKLAESPST----SDCERKTGSEGLP-------KPTTRSAADLEWNDG 563
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A835YTX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.660e-17
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   64 GDINKRYFRIQKIKETD------ELALCYYKNSNDPDVRGWVYLRDITEIAE-DKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALCPKAFIKLE 330
            GD NKR+F++ +++  +      ELALCY  + +D D +GWVYL+D++EI+E   D MI SS ARTL L A+TRAEH  W+T +  LC  AF+KLE
Sbjct:   63 GDSNKRWFQVVQLEPGEAAAGERELALCYSHSPDDKDFKGWVYLKDVSEISEIGSDFMIISSPARTLRLAAQTRAEHRLWITALCRLCVGAFVKLE 158
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A7S2SQ49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ49_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.650e-14
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIK---ETDELALCYYKNSNDPDVRGWVYLRDITEIAEDK-----DTMIFSSAARTLHLYAETRAEHNQWVTGMAALC 306
            L+G+LKK   K G  +       +R+F++Q+ +   E  ELALCYYK +   + RGWV+L+D+ E+ E++      TM+    +RT+ L A+TRAEH  W +G+ ALC
Sbjct:   27 LEGWLKK---KTGGKKSWGPSETRRWFKVQQTQGSEEDGELALCYYKTAGSTEPRGWVFLKDVVEVREERYDKSVPTMVIIHPSRTMRLTAKTRAEHRLWFSGIKALC 131
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A6A5ASQ1_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASQ1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.990e-14
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQ-----KIKETDELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALC 306
            L+G++ K KSK        G  NKR+F++         ET  L L Y+K+    DVRGW+YL D+TEI    D +   S  RTL L  ET AEH  W+  +  LC
Sbjct:   36 LEGWMTKYKSKGKFF----GTSNKRWFKVNVTAVNNASETQRLTLSYFKSKKATDVRGWIYLEDVTEIINKSDAIEIVSPTRTLRLKGETAAEHRMWLDSLRQLC 136
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: W4H1U4_9STRA (PH domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1U4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.900e-12
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQ-----KIKETDELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALC 306
            L+G++ K KSK        G  NKR+F++         ET  L L Y+K+    DVRGW+YL D+TEI    D +   S  RTL L  ET AEH  W+  +  LC
Sbjct:   15 LEGWMTKYKSKGKFF----GTSNKRWFKVNVTAVNNASETQRLTLSYFKSKKATDVRGWIYLEDVTEIINKSDAIEIVSPTRTLRLKGETAAEHRMWLDSLRQLC 115
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A024UB06_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UB06_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.310e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETD-----ELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAALC 306
            L+G++ K KSK        G  NKR+F++    + +      L L Y+K+    +VRGW+YL D+TEI+   D +   S  RTL L  ET AEH  W+  +  LC
Sbjct:   12 LEGWMTKYKSKGKFF----GTSNKRWFKVNVATDDNASHIQRLTLSYFKSKKATEVRGWIYLEDVTEISNKADVIEIVSPTRTLRLKGETVAEHRMWLESLRQLC 112
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A7S3H735_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H735_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.010e-11
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETD--ELALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGM 294
            L+G+L K+K             N R+F++Q++K  D  ELALCY+K+  D + RGW+Y++D++EI + + +    S ART+ + A T  E   W+  M
Sbjct:   20 LEGWLIKKKGDYHKKNKFFHHDNMRWFKLQEVKGNDHSELALCYFKSQRDKEPRGWIYVKDVSEIVDTETSFTLVSPARTMTIEATTPVELTTWLRAM 117
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: T0QJF1_SAPDV (PH domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QJF1_SAPDV)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-6
Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETDE-----LALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAAL 303
            L+G+L K  SK           NKR+F++      D+     L L Y+K     +VRGW+YL D+T+I    + +  +S +RTL +  ET AEH  W   + AL
Sbjct:   15 LEGWLVKYNSKEKFF---GSSSNKRWFKVDVANPDDDVSMHRLILSYFKAKKAKEVRGWIYLEDVTKINVKPNLIEIASPSRTLRVKGETAAEHKLWAESLQAL 115
[Close]
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Match: A0A067CWF9_SAPPC (PH domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CWF9_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 1.650e-6
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:    7 LQGYLKKEKSKNGLLRGLTGDINKRYFRIQKIKETDE-----LALCYYKNSNDPDVRGWVYLRDITEIAEDKDTMIFSSAARTLHLYAETRAEHNQWVTGMAAL 303
            L+G+L K  SK           NKR+F++      D      L L Y+K     +VRGW+YL D+T+I    + +  +S +RTL +  ET AEH  W   + AL
Sbjct:   15 LEGWLVKYNSKEKFF---GSSCNKRWFKVDVANPEDHVSMHRLILSYFKAKKAKEVRGWIYLEDVTKINVKPNLIEIASPSRTLRVKGETTAEHKLWADSLQAL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig163.3611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FLD7_ECTSI2.760e-4833.50PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JEF7_9PHAE8.180e-4631.54PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835YTX4_9STRA4.660e-1750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SQ49_9STRA4.650e-1439.81Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6A5ASQ1_9STRA6.990e-1440.00PH domain-containing protein n=1 Tax=Aphanomyces a... [more]
W4H1U4_9STRA4.900e-1240.00PH domain-containing protein n=3 Tax=Aphanomyces a... [more]
A0A024UB06_9STRA5.310e-1237.14PH domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A7S3H735_9STRA7.010e-1135.71Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
T0QJF1_SAPDV1.200e-634.62PH domain-containing protein n=2 Tax=Saprolegnia d... [more]
A0A067CWF9_SAPPC1.650e-634.62PH domain-containing protein n=1 Tax=Saprolegnia p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig163contigH-paniculata_contig163:31917..36272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_007770.1
Exons5
Model size2462
Cds size2061
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929299.7201118-UTR-H-paniculata_contig163:31916..320211622929299.7201118-UTR-H-paniculata_contig163:31916..32021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 31917..32021 +
1691480806.3850508-UTR-H-paniculata_contig163:31916..320211691480806.3850508-UTR-H-paniculata_contig163:31916..32021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 31917..32021 +
1622929299.7646973-UTR-H-paniculata_contig163:32929..330371622929299.7646973-UTR-H-paniculata_contig163:32929..33037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 32930..33037 +
1691480806.3956716-UTR-H-paniculata_contig163:32929..330371691480806.3956716-UTR-H-paniculata_contig163:32929..33037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 32930..33037 +
1622929299.8627825-UTR-H-paniculata_contig163:36084..362721622929299.8627825-UTR-H-paniculata_contig163:36084..36272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 36085..36272 +
1691480806.4448695-UTR-H-paniculata_contig163:36084..362721691480806.4448695-UTR-H-paniculata_contig163:36084..36272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig163 36085..36272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929299.7809486-CDS-H-paniculata_contig163:33037..331551622929299.7809486-CDS-H-paniculata_contig163:33037..33155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 33038..33155 +
1691480806.407734-CDS-H-paniculata_contig163:33037..331551691480806.407734-CDS-H-paniculata_contig163:33037..33155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 33038..33155 +
1622929299.81058-CDS-H-paniculata_contig163:33408..347631622929299.81058-CDS-H-paniculata_contig163:33408..34763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 33409..34763 +
1691480806.4170575-CDS-H-paniculata_contig163:33408..347631691480806.4170575-CDS-H-paniculata_contig163:33408..34763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 33409..34763 +
1622929299.82669-CDS-H-paniculata_contig163:35169..355371622929299.82669-CDS-H-paniculata_contig163:35169..35537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 35170..35537 +
1691480806.425619-CDS-H-paniculata_contig163:35169..355371691480806.425619-CDS-H-paniculata_contig163:35169..35537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 35170..35537 +
1622929299.8471563-CDS-H-paniculata_contig163:35864..360841622929299.8471563-CDS-H-paniculata_contig163:35864..36084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 35865..36084 +
1691480806.4348166-CDS-H-paniculata_contig163:35864..360841691480806.4348166-CDS-H-paniculata_contig163:35864..36084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig163 35865..36084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig163.3611.1prot_H-paniculata_contig163.3611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig163 33038..36084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig163.3611.1

>prot_H-paniculata_contig163.3611.1 ID=prot_H-paniculata_contig163.3611.1|Name=mRNA_H-paniculata_contig163.3611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=687bp
MIFSSAARTLHLYAETRAEHNQWVTGMAALCPKAFIKLERNAPLLKRTNN
AQLTPIHVRRESMERARHISEKQGHKENLGVSNVGGTGGSLRDSTHYSIE
DVNDGEDETIEADHHILSAEDEDCRRSTSEDLRKQPSRIDQECDRGRREK
QSSSRASIEIRDSGDSGNSMSRKNNSEHRGDASTRGGGDINPDEGEGAPQ
NESRRRSKTFQGEDREEMCGENYDFSKEISDDIQKRVDREVSATVNEGER
REQTKNRERGEVNMVDNIEDGSGKAAYATNGRRRFDSHSSVDGGDDLDEK
ACVGKHSDNKYAHESGTLHDKLERKPEFRTLDGDESANNLDGNDDLGHKP
SQEEDTRHATDRKEEGGPDHTCSNQDEERELDQCAELEILTPSLEITWEK
PRRRGTATSRLHRHISRIGEPEDRPDGHLLPPPKEFLSNHSSGSQSTIRR
GQDNPPEAKDSGLQLIIKSTRKSRRRSAADLEWGDGELPQEHLSSRLEEK
LAVPVNHGPVDVSDSEDEAGGDLNLEIEKQRRRASAAVQALEAAAKEADK
ERGERTRPWGSRMEGEDSRCRSSNSGKNIVLRKGSKTGGVPAPARPPPGP
SVKARRGHGAPPPGMAAPKLAPRSCSSSERRHDYDENCVSDSWDDEAKSE
AGVRALPLPASGGGTSVSLLDANISNKANHWWYYGD*
back to top

mRNA from alignment at H-paniculata_contig163:31917..36272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig163.3611.1 ID=mRNA_H-paniculata_contig163.3611.1|Name=mRNA_H-paniculata_contig163.3611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4356bp|location=Sequence derived from alignment at H-paniculata_contig163:31917..36272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCGTTGCAGGGCTATCTGAAGAAGGAGAAGTCCAAAAACGGGCTCCT
GCGTGGCCTCACTGGGGACATCAACAAGCGCTACTTCAGGATCCAAAAGA
TCAAGGTGTGAGATATTGTAACACGCAACATTATGCATACTACTGACTGC
CCGCTACACGGCACCGTCGTTGATTCAGTTAGCACACAAATCAATACCAA
GGACACATGGATACGGATGTCTTGAACTTTCAAGCATGATCTAGTGTAGT
GTTTTGTATCAGTTCCACTGCGTTGCACGGTCCGCAAGTCGTGCGGGTAT
GAGCCGTATGTCGGAGAAATTGAATACTCGACAGAACTCAGGTTCAATCC
TTTTAACTTCCATAACGAGTTTGCTTAAGAAATATTGCTTACATTTGAGG
CATATATAAGAATAAGATTCGGAAGTCTGAAGGCGTAGGGTGTTGCCTCG
TTAAGGGCACGCAGTGTAGGGTGAAATGAATAATAAAAAACGCCCCCCAG
AGCAATCAATCTGCCTCCTCCACCCTTCGTCCTAAATCGCAACACCCCCC
TTCATTTTGACAGCGGGTCGGAGTGATCAGGCTGATAATGTGCTGTATTG
TACATCGTGCAGACCCACGGTAGTGATCGTGGTCTGCCCCAGCGACAGAA
CTTTCAGAATATTTTGACCCCCAATGTTCCCACACTGAGCTTGAAGCTTG
AGGCTTGTGAGGCAATGCTGCTGTGTGACGATTGTAGAACAATGTTCGTG
CTCGATGTACGTCAGCTTCAGGTGCCACAAAAAATAGAATGAGAACGAGG
AACGTCGGCTCATCCGGGTCATGACGACTTCACATATCGAAGTTCAGACG
CCTGGCTTTAGGGAATATTGTTCAATATACCCAAGAAAATAAGCCGTGAG
CTTCACGCCAAATGATGATATCTCAAGTGGTGTCGAGTACTATAATTTAC
ATCTTCAAGCATTTCATTCCCCTGCCTCGGAATGGTTCGATTTTGGTCGG
AATACCGACGTAGGAAACCGACGAGCTGGCGCTGTGCTACTACAAAAACA
GTAACGACCCCGACGTACGTGGCTGGGTTTATCTGAGGGACATAACGGAA
ATCGCTGAAGATAAAGACACTATGATTTTCTCTTCAGCGGCGCGGACACT
TCATCTGTATGCGGAGACAAGGGCTGAGCATAACCAGTGGGTGACAGGCA
TGGCGGCGCTCTGCCCTAAGGCCTTCATCAAGCTTGAACGTACGTGGACG
AGTTTTGGTTGCCTGTAAGAATCGGAGTGCTGGACGATGCACATGCGATC
AAACGATTTTGCAGTGCCAAGTAGAATGCATCTTGGTCGAAAATACTTGC
CAGGAGTCTAATTTTGGGGTGAGGTCCATCAGCACACCACGGAGAGTCGC
ACACGCCAAGAGACGATGATGACTTGAAGATGACTAAAGTAATAGAATAT
CTCAGAATTTTTCTCTTGGTTCCCATTGTCCTACCAAAGCAGGCAATGCA
CCGTTGCTCAAGAGAACGAACAACGCTCAGCTGACGCCCATCCACGTTCG
GCGTGAAAGCATGGAGAGGGCACGGCATATATCAGAGAAGCAGGGACACA
AGGAAAATTTGGGTGTCTCAAATGTAGGAGGTACAGGAGGTTCCTTGCGT
GACTCTACCCACTACAGTATAGAAGACGTTAACGACGGCGAGGACGAGAC
GATAGAGGCAGATCACCATATATTGAGTGCTGAGGATGAGGATTGTCGTC
GCTCGACGAGCGAAGACTTGCGGAAACAACCGTCCAGAATTGATCAAGAA
TGCGATCGAGGTAGGCGGGAGAAGCAGTCATCGAGTAGGGCTAGTATTGA
GATCCGCGACTCAGGAGACAGTGGGAATTCTATGAGCAGAAAGAATAACT
CGGAGCACCGAGGAGACGCGAGCACCAGGGGCGGTGGGGATATTAATCCC
GACGAAGGCGAGGGTGCACCACAAAACGAGTCCCGTCGCCGAAGCAAAAC
ATTTCAAGGAGAAGATCGTGAAGAAATGTGTGGAGAAAACTATGACTTCT
CCAAGGAGATCTCGGACGATATCCAGAAAAGGGTGGACCGGGAGGTAAGC
GCAACCGTAAACGAGGGTGAGCGACGTGAGCAAACCAAGAACCGCGAGAG
GGGTGAAGTAAATATGGTAGATAACATAGAGGATGGCAGTGGGAAGGCAG
CTTATGCCACAAACGGCAGGCGCCGCTTCGACAGCCATTCCAGTGTTGAT
GGCGGAGATGATCTCGATGAAAAAGCCTGTGTTGGTAAGCACAGTGACAA
CAAGTACGCCCATGAGTCGGGCACACTCCATGACAAGCTGGAGAGAAAAC
CTGAATTTCGGACGTTGGATGGGGACGAGAGCGCGAACAATCTTGACGGA
AATGACGACCTTGGACATAAACCAAGCCAAGAGGAAGACACTCGACATGC
AACGGACAGAAAAGAGGAAGGTGGACCTGATCACACGTGCAGTAATCAAG
ACGAGGAGAGAGAATTAGATCAATGTGCAGAACTTGAAATTTTGACCCCC
TCACTCGAAATCACGTGGGAAAAGCCCCGCCGGAGAGGGACGGCAACATC
TCGATTGCATAGGCATATATCGAGAATTGGCGAACCAGAGGATCGGCCAG
ATGGCCATCTTCTTCCGCCACCAAAAGAGTTTCTTTCGAACCATTCGTCC
GGCTCGCAGTCTACCATCCGACGAGGGCAAGACAATCCACCCGAAGCTAA
GGATAGCGGGCTCCAACTCATCATTAAATCGACGCGGAAAAGCCGGAGGC
GGAGTGCGGCAGACTTAGAGTGGGGCGATGGAGAACTACCACAAGAGGTA
AATGCTGCAATCGATCTTGCGTTGAAAAAATGTACGACACCAGATGTTCG
TGCTTAGCTCTAAATACGCGAAATCATTTCATCCTAACAGTTGTGCTGGT
ATGTGGTGTTACAGTTAGAGATGGTTTGCCTGCAAAGCTGAGACTCCCAC
CGTGAATGCGGTGACCATGGATACTCCTATTTCTTCATACGGGGCGATGA
AGCTCGTTTGGTCGGTTGCACGTAAAGGCACTCATATTTCGTCCGCCATT
TGAGAGCACATCTTACGCCTCGCGCAGCCTGTTTGTGCCTGCCGACAAGT
TGCTGAAACACGGTGACAGAGTCCATATATTTATTTCTCACGTCCCGCCA
ATATCTCTATCGACACTGACCATGCCCTGGATTTGGTTCCTGATGCCAAG
TAGCACCTATCGAGTCGTCTGGAGGAAAAGTTAGCAGTGCCGGTAAACCA
TGGGCCTGTGGATGTCAGCGACTCCGAAGACGAAGCCGGTGGCGACTTGA
ACCTCGAGATCGAGAAACAGCGAAGACGAGCCAGCGCCGCAGTTCAAGCT
CTCGAGGCTGCGGCGAAAGAGGCCGACAAGGAGCGCGGGGAACGCACTCG
CCCCTGGGGTAGCAGGATGGAAGGCGAAGATTCCAGGTGCCGCAGCAGTA
ACAGCGGGAAGAATATCGTGCTCCGGAAAGGTAGCAAAACAGGGGGTGTG
CCTGCGCCAGCGAGGCCTCCTCCGGGACCGTCCGTAAAAGCACGTCGAGG
CCATGGCGCCCCTCCTCCAGGGTGAGCATTTTACAAATGCTTCGCGTTTC
GTGAGATAAGCTGCCTGATCAACATCTCCCAAGAACCACAGGTGGTAGGT
AGCGGTGCACAAACCGTGATGAAGTATTGATATCCAAGGATACGTCTAGA
ATCGAATACGGTCGATGATGCTCCGTCATTTTGAGTTGTTGGCCGTACTC
TCGTGCTCGCTAATCAGCTATTTCTGTGTGTGTCGTGGTTGCTCTAGAGC
AACAAACACAAGTTGATATTTTCCCCAGAGTCAACTACTATGCGTATTTG
CTGTACCCACGCCTCCACCCGCGCAACGATAATCCCCATTTGCAACAGGA
TGGCTGCTCCCAAGTTGGCTCCACGATCGTGTTCTTCTTCAGAGCGCCGC
CACGATTATGATGAGAATTGTGTTAGCGATAGCTGGGACGACGAGGCAAA
GAGTGAGGCTGGCGTGCGCGCTTTGCCACTGCCTGCGAGCGGGGGTGGGA
CATCGGTGTCACTACTAGATGCTAACATTAGCAATAAGGCCAACCACTGG
TGGTATTATGGTGATTAGCTCCCTGTTGAACGCAGAATCAAATTCGTTGA
AACAGTTCCCACGCTGTTGTTATGTTGGTGTTTTCTGTTGAGGTCTTGCG
CACTATGGGTATCCCTGTGTTCTTTAGGACCTGTTGTGGCGTCATCGTTA
GTGAACACTGTACTTTTATGCACCGAAGGAAACCTGTTGCCTGCGTTGGC
GATGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig163:31917..36272+

>mRNA_H-paniculata_contig163.3611.1 ID=mRNA_H-paniculata_contig163.3611.1|Name=mRNA_H-paniculata_contig163.3611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4122bp|location=Sequence derived from alignment at H-paniculata_contig163:31917..36272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTCTCTTCAGCGGCGCGGACACTTCATCTGTATGCGGAGACAAG
GGCTGAGCATAACCAGTGGGTGACAGGCATGGCGGCGCTCTGCCCTAAGG
CCTTCATCAAGCTTGAACATGATTTTCTCTTCAGCGGCGCGGACACTTCA
TCTGTATGCGGAGACAAGGGCTGAGCATAACCAGTGGGTGACAGGCATGG
CGGCGCTCTGCCCTAAGGCCTTCATCAAGCTTGAACGCAATGCACCGTTG
CTCAAGAGAACGAACAACGCTCAGCTGACGCCCATCCACGTTCGGCGTGA
AAGCATGGAGAGGGCACGGCATATATCAGAGAAGCAGGGACACAAGGAAA
ATTTGGGTGTCTCAAATGTAGGAGGTACAGGAGGTTCCTTGCGTGACTCT
ACCCACTACAGTATAGAAGACGTTAACGACGGCGAGGACGAGACGATAGA
GGCAGATCACCATATATTGAGTGCTGAGGATGAGGATTGTCGTCGCTCGA
CGAGCGAAGACTTGCGGAAACAACCGTCCAGAATTGATCAAGAATGCGAT
CGAGGTAGGCGGGAGAAGCAGTCATCGAGTAGGGCTAGTATTGAGATCCG
CGACTCAGGAGACAGTGGGAATTCTATGAGCAGAAAGAATAACTCGGAGC
ACCGAGGAGACGCGAGCACCAGGGGCGGTGGGGATATTAATCCCGACGAA
GGCGAGGGTGCACCACAAAACGAGTCCCGTCGCCGAAGCAAAACATTTCA
AGGAGAAGATCGTGAAGAAATGTGTGGAGAAAACTATGACTTCTCCAAGG
AGATCTCGGACGATATCCAGAAAAGGGTGGACCGGGAGGTAAGCGCAACC
GTAAACGAGGGTGAGCGACGTGAGCAAACCAAGAACCGCGAGAGGGGTGA
AGTAAATATGGTAGATAACATAGAGGATGGCAGTGGGAAGGCAGCTTATG
CCACAAACGGCAGGCGCCGCTTCGACAGCCATTCCAGTGTTGATGGCGGA
GATGATCTCGATGAAAAAGCCTGTGTTGGTAAGCACAGTGACAACAAGTA
CGCCCATGAGTCGGGCACACTCCATGACAAGCTGGAGAGAAAACCTGAAT
TTCGGACGTTGGATGGGGACGAGAGCGCGAACAATCTTGACGGAAATGAC
GACCTTGGACATAAACCAAGCCAAGAGGAAGACACTCGACATGCAACGGA
CAGAAAAGAGGAAGGTGGACCTGATCACACGTGCAGTAATCAAGACGAGG
AGAGAGAATTAGATCAATGTGCAGAACTTGAAATTTTGACCCCCTCACTC
GAAATCACGTGGGAAAAGCCCCGCCGGAGAGGGACGGCAACATCTCGATT
GCATAGGCATATATCGAGAATTGGCGAACCAGAGGATCGGCCAGATGGCC
ATCTTCTTCCGCCACCAAAAGAGTTTCTTTCGAACCATTCGTCCGGCTCG
CAGTCTACCATCCGACGAGGGCAAGACAATCCACCCGAAGCTAAGGATAG
CGGGCTCCAACTCATCATTAAATCGACGCGGAAAAGCCGGAGGCGGAGTG
CGGCAGACTTAGAGTGGGGCGATGGAGAACTACCACAAGAGGCAATGCAC
CGTTGCTCAAGAGAACGAACAACGCTCAGCTGACGCCCATCCACGTTCGG
CGTGAAAGCATGGAGAGGGCACGGCATATATCAGAGAAGCAGGGACACAA
GGAAAATTTGGGTGTCTCAAATGTAGGAGGTACAGGAGGTTCCTTGCGTG
ACTCTACCCACTACAGTATAGAAGACGTTAACGACGGCGAGGACGAGACG
ATAGAGGCAGATCACCATATATTGAGTGCTGAGGATGAGGATTGTCGTCG
CTCGACGAGCGAAGACTTGCGGAAACAACCGTCCAGAATTGATCAAGAAT
GCGATCGAGGTAGGCGGGAGAAGCAGTCATCGAGTAGGGCTAGTATTGAG
ATCCGCGACTCAGGAGACAGTGGGAATTCTATGAGCAGAAAGAATAACTC
GGAGCACCGAGGAGACGCGAGCACCAGGGGCGGTGGGGATATTAATCCCG
ACGAAGGCGAGGGTGCACCACAAAACGAGTCCCGTCGCCGAAGCAAAACA
TTTCAAGGAGAAGATCGTGAAGAAATGTGTGGAGAAAACTATGACTTCTC
CAAGGAGATCTCGGACGATATCCAGAAAAGGGTGGACCGGGAGGTAAGCG
CAACCGTAAACGAGGGTGAGCGACGTGAGCAAACCAAGAACCGCGAGAGG
GGTGAAGTAAATATGGTAGATAACATAGAGGATGGCAGTGGGAAGGCAGC
TTATGCCACAAACGGCAGGCGCCGCTTCGACAGCCATTCCAGTGTTGATG
GCGGAGATGATCTCGATGAAAAAGCCTGTGTTGGTAAGCACAGTGACAAC
AAGTACGCCCATGAGTCGGGCACACTCCATGACAAGCTGGAGAGAAAACC
TGAATTTCGGACGTTGGATGGGGACGAGAGCGCGAACAATCTTGACGGAA
ATGACGACCTTGGACATAAACCAAGCCAAGAGGAAGACACTCGACATGCA
ACGGACAGAAAAGAGGAAGGTGGACCTGATCACACGTGCAGTAATCAAGA
CGAGGAGAGAGAATTAGATCAATGTGCAGAACTTGAAATTTTGACCCCCT
CACTCGAAATCACGTGGGAAAAGCCCCGCCGGAGAGGGACGGCAACATCT
CGATTGCATAGGCATATATCGAGAATTGGCGAACCAGAGGATCGGCCAGA
TGGCCATCTTCTTCCGCCACCAAAAGAGTTTCTTTCGAACCATTCGTCCG
GCTCGCAGTCTACCATCCGACGAGGGCAAGACAATCCACCCGAAGCTAAG
GATAGCGGGCTCCAACTCATCATTAAATCGACGCGGAAAAGCCGGAGGCG
GAGTGCGGCAGACTTAGAGTGGGGCGATGGAGAACTACCACAAGAGCACC
TATCGAGTCGTCTGGAGGAAAAGTTAGCAGTGCCGGTAAACCATGGGCCT
GTGGATGTCAGCGACTCCGAAGACGAAGCCGGTGGCGACTTGAACCTCGA
GATCGAGAAACAGCGAAGACGAGCCAGCGCCGCAGTTCAAGCTCTCGAGG
CTGCGGCGAAAGAGGCCGACAAGGAGCGCGGGGAACGCACTCGCCCCTGG
GGTAGCAGGATGGAAGGCGAAGATTCCAGGTGCCGCAGCAGTAACAGCGG
GAAGAATATCGTGCTCCGGAAAGGTAGCAAAACAGGGGGTGTGCCTGCGC
CAGCGAGGCCTCCTCCGGGACCGTCCGTAAAAGCACGTCGAGGCCATGGC
GCCCCTCCTCCAGGCACCTATCGAGTCGTCTGGAGGAAAAGTTAGCAGTG
CCGGTAAACCATGGGCCTGTGGATGTCAGCGACTCCGAAGACGAAGCCGG
TGGCGACTTGAACCTCGAGATCGAGAAACAGCGAAGACGAGCCAGCGCCG
CAGTTCAAGCTCTCGAGGCTGCGGCGAAAGAGGCCGACAAGGAGCGCGGG
GAACGCACTCGCCCCTGGGGTAGCAGGATGGAAGGCGAAGATTCCAGGTG
CCGCAGCAGTAACAGCGGGAAGAATATCGTGCTCCGGAAAGGTAGCAAAA
CAGGGGGTGTGCCTGCGCCAGCGAGGCCTCCTCCGGGACCGTCCGTAAAA
GCACGTCGAGGCCATGGCGCCCCTCCTCCAGGGATGGCTGCTCCCAAGTT
GGCTCCACGATCGTGTTCTTCTTCAGAGCGCCGCCACGATTATGATGAGA
ATTGTGTTAGCGATAGCTGGGACGACGAGGCAAAGAGTGAGGCTGGCGTG
CGCGCTTTGCCACTGCCTGCGAGCGGGGGTGGGACATCGGTGTCACTACT
AGATGCTAACATTAGCAATAAGGCCAACCACTGGTGGTATTATGGTGATT
AGGATGGCTGCTCCCAAGTTGGCTCCACGATCGTGTTCTTCTTCAGAGCG
CCGCCACGATTATGATGAGAATTGTGTTAGCGATAGCTGGGACGACGAGG
CAAAGAGTGAGGCTGGCGTGCGCGCTTTGCCACTGCCTGCGAGCGGGGGT
GGGACATCGGTGTCACTACTAGATGCTAACATTAGCAATAAGGCCAACCA
CTGGTGGTATTATGGTGATTAG
back to top