mRNA_H-paniculata_contig16288.3605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16288.3605.1
Unique NamemRNA_H-paniculata_contig16288.3605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: D7FIN1_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN1_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.740e-40
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 GGTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLEHV 270
            G THVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASE ETLSTLRFAERLKKVKNKM+VHMDA+S+E+L LKREN +LRA+V+ LE +
Sbjct:  480 GTTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASEPETLSTLRFAERLKKVKNKMVVHMDARSREILSLKRENADLRAKVEQLERM 569
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A812U8M2_9DINO (Kinesin-like protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812U8M2_9DINO)

HSP 1 Score: 108 bits (271), Expect = 1.830e-25
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 GGTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLE 264
            GG H+PYRDSKLTR+LQDSLGG +YTV+ CNVSP + +  ETLS+LRFAER KK++NK +V+ D K + +L L +EN+ LRA++  LE
Sbjct:  465 GGRHIPYRDSKLTRMLQDSLGGNSYTVMICNVSPAKINVDETLSSLRFAERAKKIENKAVVNRDPKGERILELLQENKALRAKIARLE 552
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A835Z0B7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.600e-24
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   10 HVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLEHVAG 276
            HVPYRDSKLTRLLQDSLGG+A+ +V CNVSP    E ET+STLRFAERLKKVKN++ VH+DA +++++ L+ +   LR RV  LE + G
Sbjct:  450 HVPYRDSKLTRLLQDSLGGSAFCMVICNVSPSSTCEGETVSTLRFAERLKKVKNRVHVHVDASARKIVELQSQVRALRNRVAELEALLG 538
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A813LHG5_POLGL (Kinesin-like protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LHG5_POLGL)

HSP 1 Score: 100 bits (250), Expect = 9.600e-23
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:   10 HVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLE-HVA 273
            H+PYRDSKLTRLLQDSLGG +YTV+ CN+S  + +  ETLS+LRFAER KK++NK  V+ D K + ++ L +EN+ L+A+V  LE HVA
Sbjct:  368 HIPYRDSKLTRLLQDSLGGNSYTVIVCNISLAKINAEETLSSLRFAERAKKIENKASVNRDPKGERIVELMQENKALKAKVDRLEAHVA 456
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A812HG01_9DINO (Kinesin-like protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812HG01_9DINO)

HSP 1 Score: 100 bits (250), Expect = 1.530e-22
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 GGTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKREN 231
            GG H+PYRDSKLTR+LQDSLGG +YTV+ CNVSP + +  ETLS+LRFAER KK++NK +V+ D K + +L L +EN
Sbjct:  451 GGRHIPYRDSKLTRMLQDSLGGNSYTVMICNVSPAKINVDETLSSLRFAERAKKIENKAVVNRDPKGERILELLQEN 527
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A7S1CBN7_9STRA (Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBN7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.180e-21
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   10 HVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLE 264
            HVPYRDSKLTRLLQDSLGG A T++   VSP   +  ETLSTLRFAER KK+KNK  V++D  +  +  L  EN  L ARV+ LE
Sbjct:  143 HVPYRDSKLTRLLQDSLGGNARTLMLACVSPASINRDETLSTLRFAERAKKIKNKARVNVDPAAARIAELLEENRRLAARVEELE 227
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A0V1F1I1_TRIPS (Kinesin-like protein (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1F1I1_TRIPS)

HSP 1 Score: 95.1 bits (235), Expect = 1.400e-20
Identity = 46/92 (50.00%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   10 HVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLEHVAGVSI 285
            H+PYRDSKLTR+LQDSLGG + TV+   +SP  ++  ETL+TLR+AER + +KNK +V++D  + ELL L++ENEELR  ++  ++    +I
Sbjct:  282 HIPYRDSKLTRILQDSLGGNSVTVMIACISPAASNHDETLNTLRYAERARNIKNKPVVNLDPMANELLRLQKENEELRHALEATDYTKKYNI 373
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A0V1IYP6_TRIPS (Kinesin-like protein n=19 Tax=Trichinella TaxID=6333 RepID=A0A0V1IYP6_TRIPS)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-20
Identity = 46/92 (50.00%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   10 HVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLEHVAGVSI 285
            H+PYRDSKLTR+LQDSLGG + TV+   +SP  ++  ETL+TLR+AER + +KNK +V++D  + ELL L++ENEELR  ++  ++    +I
Sbjct:  281 HIPYRDSKLTRILQDSLGGNSVTVMIACISPAASNHDETLNTLRYAERARNIKNKPVVNLDPMANELLRLQKENEELRHALEATDYTKKYNI 372
[Close]
BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A1B6D3T9_9HEMI (Kinesin-like protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6D3T9_9HEMI)

HSP 1 Score: 94.7 bits (234), Expect = 2.130e-20
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   13 VPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENEELR 243
            + YRDSKLTRLLQDSLGG A+T++   +SP +A+  ETLSTLR+AE+ KK+KNK IV+ D K+ E+  LKRENE+L+
Sbjct:  276 INYRDSKLTRLLQDSLGGNAFTIMIACISPADANHYETLSTLRYAEKAKKIKNKAIVNQDRKAAEIAKLKRENEKLK 352
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BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Match: A0A085MXF8_9BILA (Kinesin-like protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MXF8_9BILA)

HSP 1 Score: 94.7 bits (234), Expect = 2.270e-20
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    1 GGTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAERLKKVKNKMIVHMDAKSKELLMLKRENE 234
            G  HVPYRDSKLTRLLQDSLGG + TV+   VSP + +  ETL+TLR+AER KK+KNK  V++D  + ELL L++ENE
Sbjct:  277 GRVHVPYRDSKLTRLLQDSLGGNSVTVMIACVSPADTNHDETLNTLRYAERAKKIKNKPFVNLDPTAAELLKLRQENE 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16288.3605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIN1_ECTSI1.740e-4084.44Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A812U8M2_9DINO1.830e-2560.23Kinesin-like protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A835Z0B7_9STRA1.600e-2461.80P-loop containing nucleoside triphosphate hydrolas... [more]
A0A813LHG5_POLGL9.600e-2358.43Kinesin-like protein n=1 Tax=Polarella glacialis T... [more]
A0A812HG01_9DINO1.530e-2262.34Kinesin-like protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S1CBN7_9STRA9.180e-2160.00Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0V1F1I1_TRIPS1.400e-2050.00Kinesin-like protein (Fragment) n=1 Tax=Trichinell... [more]
A0A0V1IYP6_TRIPS1.660e-2050.00Kinesin-like protein n=19 Tax=Trichinella TaxID=63... [more]
A0A1B6D3T9_9HEMI2.130e-2061.04Kinesin-like protein n=1 Tax=Clastoptera arizonana... [more]
A0A085MXF8_9BILA2.270e-2061.54Kinesin-like protein n=2 Tax=Trichuris suis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16288contigH-paniculata_contig16288:1200..3516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue6.6e-35
Seed eggNOG ortholog2880.D7FIN1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_000380.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size334
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16288.3605.1prot_H-paniculata_contig16288.3605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16288 1202..3516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.8861036-CDS-H-paniculata_contig16288:1201..13691622929298.8861036-CDS-H-paniculata_contig16288:1201..1369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 1202..1369 -
1691480805.9927373-CDS-H-paniculata_contig16288:1201..13691691480805.9927373-CDS-H-paniculata_contig16288:1201..1369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 1202..1369 -
1622929298.9040165-CDS-H-paniculata_contig16288:2783..28941622929298.9040165-CDS-H-paniculata_contig16288:2783..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 2784..2894 -
1691480806.0046215-CDS-H-paniculata_contig16288:2783..28941691480806.0046215-CDS-H-paniculata_contig16288:2783..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 2784..2894 -
1622929298.9194567-CDS-H-paniculata_contig16288:3465..35161622929298.9194567-CDS-H-paniculata_contig16288:3465..3516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 3466..3516 -
1691480806.0147295-CDS-H-paniculata_contig16288:3465..35161691480806.0147295-CDS-H-paniculata_contig16288:3465..3516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16288 3466..3516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16288.3605.1

>prot_H-paniculata_contig16288.3605.1 ID=prot_H-paniculata_contig16288.3605.1|Name=mRNA_H-paniculata_contig16288.3605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
GGTHVPYRDSKLTRLLQDSLGGTAYTVVCCNVSPIEASESETLSTLRFAE
RLKKVKNKMIVHMDAKSKELLMLKRENEELRARVQYLEHVAGVSIEDAWT
SPSPRRRTVG
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mRNA from alignment at H-paniculata_contig16288:1200..3516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16288.3605.1 ID=mRNA_H-paniculata_contig16288.3605.1|Name=mRNA_H-paniculata_contig16288.3605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2317bp|location=Sequence derived from alignment at H-paniculata_contig16288:1200..3516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCACGCACGTGCCATATCGAGATAGCAAGCTCACCAGACTGTTACA
GGCAAACGAAAAAAAAAAAATGACATGATATTATTTCTGTTGGTGGATGT
ATGATTGACTGGCTGATTGGTCTGTTTCTTGGGGGCTTAACGGGTGTACG
ATGATTGGCCGTAGAATCAAATGAAAACAGAGTGTGGACACGTCAGACGT
GGTCAAGGGTAGCCTGAGAAGCATGGGGAGAGAGACACGAGCATGTTGTG
TGATACGCGACAGTGTATCCATGCTGCGCCTCCGCTACCTCCATCCCATA
CTAACATCGTTAGACCTGCTCCTTGGCTTCCTATTGCCACCAGAACATAC
CAAGCAGCTTCACTTCAGCCGCTAGTGTTCTCTTGTCGTTTTTGACGCTC
TGAGAAGTACTATTTTCGCTCTTGGAGGTATTTGGAGGACGGACAATTCT
TGCTTCTGCATCAGATCCCACTGTAGCGTGCTAAAGTACTCGAGAGCGCA
GCGGCAACCGTGTTGGCATCTCGCGCTATGTCCGCTAGCTAAAAGAACAC
TAGTCCTGATGGGATGACCTCGGCATTCTTTCTTTAGATGCATCCGTCCC
CGCACGTTCTCGTTCTTTGCAGGACTCGCTTGGAGGGACGGCGTACACGG
TGGTGTGTTGTAACGTCAGTCCGATAGAGGCAAGTGAGTCGGAGACTCTG
AGCACGCTTCGATTTGCGGAACGCTTGAAGAAGGTGCGTGTGTATATGTG
CGTGCGTGTGCACGTGTGTGACGCTACTGGTGCTACAAACCCTTGGCGTC
TTCGCTTGTGCCGTTTTTCGAGACGGTTAGTCCAGTTTCCGCTGCAAAGC
AGGGGTCGAAGCGCATTCTTAGCGTTGTCTAAGGAGAGAGGGCTGGCTAC
CAGCTAAACCGATAAACCGATCTCAGGTCTCAGGGTTAAGGGAAGCGTAG
GGTTTATACTCAGCTCCCTAAGGTTGCGCTTGGGTATGGATGTGGCGCGT
GATTCATACTAGCCAATTGCGCTTGCATATACGAAACAACAGTTGTGAGG
ATGGATGTATATTGGTTACGCGCAGTGCAGGATCTCAAAAAGACCTTTCG
ATGCCCGCTGTAGGCGATTCCAAGCCCCCTATGGAGACCCCCGGAGGGAG
AAAATTGGGGAGTAAACGCCTTTCGGGTCAAATTGCGTTCTTTGTATTTG
CCTCCCTGAGGCTGTTGGAAATCGTATGTTTTGTAAGCCCACATGTCATA
CGGTTTTGCCAACCCTCATGTCGAGCAAAACTACTGTTATTGTGTATGCA
CGCTATAATACCTACTCTTACATGATAACTGGTACACTGTACCGTGGCAA
CCTGTTGGTACTTATCCCTAGTTTTGTTCTGGCGCGGGTGTTTTCGCTAT
GTATGTGAAGTTCAGACCCGATTGGTCAGGCTATTCAGTCAACGAGGTTC
TGAAGTCCCCAGTACTGACCCGCTACCCACGACTTGGCGCCAGAGGAATG
GCTACATCGTCCTCTAAATAATTTTCCGCATTTCGCGCCGAAGAGCCCAA
ATTTCGAAGCAGTGCCGCACCAGCGCACCGGTTTGAAACTACGCCACAGT
GTAGAACCTTGCGGCAACGCCGGCGCGCGAAATTTTTTCAAAGGTCATTG
CGAAGCTGTACGAGCAAAGATGTGCAACCGTGTCCTCCAATAGCTTAGCC
TAGCCTCCACTGCGCTCGCGAACCCGGAAGCTCGACCCAACATTAAAAAA
AAACACACACACACACACACACACGCTGTTTGACTACCCTCAGGCAGTTT
TTAGGATTTGGCGCTCTCTCGCCTCCCCCTCAGGGATTTGAAATTGCTCA
TGAATATGCATATACTCCGGAGTATTATTGGCATAATTGTGGGTTATATA
ACGTCAGCATTAATTACACATTCATGTTGTAAAACTACTGTGTACAAGAG
GTTCGGGGGCTCAAGATATGTACGTCTCAAAATTATTTTGGTAAGGTTCG
GGGTTGTCAGGTGCGTGTCTGTTTGTATGATCTATTTTAATCAATTCATG
GCTATCCTGTCTTCCGCACACGCGAGTGTGACGTCGGACCCTCTCCCCCC
CCCCAAAAAATAAACAAACGAACAAATATGAACACTATCTATATCAGGTA
AAAAATAAGATGATCGTTCACATGGATGCGAAGTCTAAGGAGCTGCTGAT
GCTCAAGAGGGAAAACGAAGAGCTACGCGCCAGGGTGCAATATCTCGAGC
ACGTCGCTGGGGTATCCATCGAGGATGCGTGGACATCACCTTCACCACGG
CGGCGTACGGTCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16288:1200..3516-

>mRNA_H-paniculata_contig16288.3605.1 ID=mRNA_H-paniculata_contig16288.3605.1|Name=mRNA_H-paniculata_contig16288.3605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16288:1200..3516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCACGCACGTGCCATATCGAGATAGCAAGCTCACCAGACTGTTACA
GGGCGGCACGCACGTGCCATATCGAGATAGCAAGCTCACCAGACTGTTAC
AGGACTCGCTTGGAGGGACGGCGTACACGGTGGTGTGTTGTAACGTCAGT
CCGATAGAGGCAAGTGAGTCGGAGACTCTGAGCACGCTTCGATTTGCGGA
ACGCTTGAAGAAGGACTCGCTTGGAGGGACGGCGTACACGGTGGTGTGTT
GTAACGTCAGTCCGATAGAGGCAAGTGAGTCGGAGACTCTGAGCACGCTT
CGATTTGCGGAACGCTTGAAGAAGGTAAAAAATAAGATGATCGTTCACAT
GGATGCGAAGTCTAAGGAGCTGCTGATGCTCAAGAGGGAAAACGAAGAGC
TACGCGCCAGGGTGCAATATCTCGAGCACGTCGCTGGGGTATCCATCGAG
GATGCGTGGACATCACCTTCACCACGGCGGCGTACGGTCGGGGTAAAAAA
TAAGATGATCGTTCACATGGATGCGAAGTCTAAGGAGCTGCTGATGCTCA
AGAGGGAAAACGAAGAGCTACGCGCCAGGGTGCAATATCTCGAGCACGTC
GCTGGGGTATCCATCGAGGATGCGTGGACATCACCTTCACCACGGCGGCG
TACGGTCGGG
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