mRNA_H-paniculata_contig16237.3587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16237.3587.1
Unique NamemRNA_H-paniculata_contig16237.3587.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16237.3587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16237contigH-paniculata_contig16237:5467..5850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.711939-UTR-H-paniculata_contig16237:5466..55381622929296.711939-UTR-H-paniculata_contig16237:5466..5538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16237 5467..5538 +
1691480805.0775142-UTR-H-paniculata_contig16237:5466..55381691480805.0775142-UTR-H-paniculata_contig16237:5466..5538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16237 5467..5538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.7284791-CDS-H-paniculata_contig16237:5538..58501622929296.7284791-CDS-H-paniculata_contig16237:5538..5850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16237 5539..5850 +
1691480805.0859497-CDS-H-paniculata_contig16237:5538..58501691480805.0859497-CDS-H-paniculata_contig16237:5538..5850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16237 5539..5850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16237.3587.1prot_H-paniculata_contig16237.3587.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16237 5539..5850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16237.3587.1

>prot_H-paniculata_contig16237.3587.1 ID=prot_H-paniculata_contig16237.3587.1|Name=mRNA_H-paniculata_contig16237.3587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MLHNSQQKTKSKKERYFPCEHNPYANYRSPVCTLCTELYLSIVSPFIFFL
ISYTSKNKTSNRTPMRVTTGKHGTPDPHTTTCPATAQDLFLSLPVSDALT
LNAG
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mRNA from alignment at H-paniculata_contig16237:5467..5850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16237.3587.1 ID=mRNA_H-paniculata_contig16237.3587.1|Name=mRNA_H-paniculata_contig16237.3587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig16237:5467..5850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTACTTGCTTGTATAGGGACAAAAAACATTTCGTACTCGTGATCTGA
CGTGTTTTTTCGGCATCAAATTATGTTGCATAATTCCCAACAAAAAACAA
AATCTAAGAAAGAGCGCTATTTTCCCTGTGAACATAACCCATATGCCAAC
TACCGGTCTCCTGTATGCACTCTCTGTACTGAACTGTATCTCTCAATAGT
GTCACCTTTCATATTTTTCCTCATCTCTTATACAAGTAAAAATAAAACCA
GCAACAGAACCCCAATGCGAGTGACCACCGGTAAACATGGGACACCAGAC
CCTCATACAACTACTTGCCCAGCGACAGCTCAAGACCTCTTTCTCAGCTT
GCCAGTTAGCGATGCACTCACCCTCAACGCCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig16237:5467..5850+

>mRNA_H-paniculata_contig16237.3587.1 ID=mRNA_H-paniculata_contig16237.3587.1|Name=mRNA_H-paniculata_contig16237.3587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig16237:5467..5850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCATAATTCCCAACAAAAAACAAAATCTAAGAAAGAGCGCTATTT
TCCCTGTGAACATAACCCATATGCCAACTACCGGTCTCCTGTATGCACTC
TCTGTACTGAACTGTATCTCTCAATAGTGTCACCTTTCATATTTTTCCTC
ATCTCTTATACAAGTAAAAATAAAACCAGCAACAGAACCCCAATGCGAGT
GACCACCGGTAAACATGGGACACCAGACCCTCATACAACTACTTGCCCAG
CGACAGCTCAAGACCTCTTTCTCAGCTTGCCAGTTAGCGATGCACTCACC
CTCAACGCCGGCATGTTGCATAATTCCCAACAAAAAACAAAATCTAAGAA
AGAGCGCTATTTTCCCTGTGAACATAACCCATATGCCAACTACCGGTCTC
CTGTATGCACTCTCTGTACTGAACTGTATCTCTCAATAGTGTCACCTTTC
ATATTTTTCCTCATCTCTTATACAAGTAAAAATAAAACCAGCAACAGAAC
CCCAATGCGAGTGACCACCGGTAAACATGGGACACCAGACCCTCATACAA
CTACTTGCCCAGCGACAGCTCAAGACCTCTTTCTCAGCTTGCCAGTTAGC
GATGCACTCACCCTCAACGCCGGC
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