mRNA_H-paniculata_contig16228.3585.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig16228.3585.1
Unique Name	mRNA_H-paniculata_contig16228.3585.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A6H5LE99_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE99_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.040e-72
Identity = 116/123 (94.31%), Postives = 122/123 (99.19%), Query Frame = 1

Query:    4 RYDGPRKMRVVLGNMHGNNADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            RY+GPRKMRVVLGNMHGNNADVEAE+SLLHRMLRGSLD++EEP L+NRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDV+EQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK
Sbjct: 1219 RYEGPRKMRVVLGNMHGNNADVEAESSLLHRMLRGSLDSLEEPCLINRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVTEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 1341

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: C9K4U6_SACJA (Unconventional myosin n=1 Tax=Saccharina japonica TaxID=88149 RepID=C9K4U6_SACJA)

HSP 1 Score: 240 bits (613), Expect = 3.170e-71
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 1

Query:    4 RYDGPRKMRVVLGNMHGNNADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            RYDGPRKMRVVLGNMHGNN+ VE +TSLLHRMLRGSLD++EEP LVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGD +EQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK
Sbjct: 1199 RYDGPRKMRVVLGNMHGNNSQVEVDTSLLHRMLRGSLDSLEEPCLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 1321

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A835YUJ6_9STRA (Tub domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.800e-36
Identity = 75/126 (59.52%), Postives = 89/126 (70.63%), Query Frame = 1

Query:   10 DGPRKMRVVLGNM-HGNNADVEAETS----LLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            DGPR+M+VVL     G  A     TS    LL +M  G L + E  +L NR PRWNA++QA+VLNF+GRVTQASVKNFQLV   D +E+I LQFGRT  + FTMDF +PLSPLQA AITLTSF+ K
Sbjct:  151 DGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEV-MLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 275

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A1I8FYP7_9PLAT (Tubby-like protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FYP7_9PLAT)

HSP 1 Score: 112 bits (281), Expect = 2.310e-28
Identity = 67/133 (50.38%), Postives = 83/133 (62.41%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNM----HGNNADVEA-----ETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM VVL  M     G+   V+      E  L+ R+ R  +  + E  L NR P WN + Q++VLNFHGRVTQASVKNFQ+V   DV +QI +QFGR   + FTMDF +PL PLQA  I L+SFD K
Sbjct:  110 LGFRGPRKMTVVLPAMLEAEEGDCVRVDIRSNSEEEGLVERLKRREMSHLME--LHNRTPVWNEETQSYVLNFHGRVTQASVKNFQIVRDNDV-DQIVMQFGRISDDLFTMDFAYPLCPLQAFGIALSSFDSK 239

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A673YEX6_SALTR (Si:dkey-220f10.4 n=2 Tax=Salmoninae TaxID=504568 RepID=A0A673YEX6_SALTR)

HSP 1 Score: 111 bits (278), Expect = 2.920e-27
Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNMHGNN--------ADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM VV+  M  N+        +D+E   SLL R   G+ D +    L+N++P WN + Q++VLNFHGRVTQASVKNFQ +V  D  + I +QFGR   + F+MD+  P+ PLQA AITL+SFD K
Sbjct:  188 LGFKGPRKMTVVIPGMMENDERVCIRPKSDIE---SLLSRYENGNTDNLV--CLMNKSPSWNEQTQSYVLNFHGRVTQASVKNFQ-IVHPDNEDYIVMQFGRVAEDVFSMDYSFPMCPLQAFAITLSSFDGK 313

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A369RWL4_9METZ (Tubby-like protein n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RWL4_9METZ)

HSP 1 Score: 113 bits (283), Expect = 3.640e-27
Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNMHGNNADV-----EAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM +++  M  N   V      A  +LL R   G +D + E  L N+ P WN   Q++VLNFHGRVTQASVKNFQ+V   DV + I +QFGR   + FTMD+ +PLS LQA AI+L+SFD K
Sbjct:  329 LGFKGPRKMTILIPGMDANQERVAVRPRNANETLLERWKSGRMDNLLE--LHNKAPEWNDNTQSYVLNFHGRVTQASVKNFQVVHDNDV-DYIIMQFGRVSEDAFTMDYKYPLSALQAFAISLSSFDGK 454

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A8C7H983_ONCKI (Si:dkey-220f10.4 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7H983_ONCKI)

HSP 1 Score: 111 bits (277), Expect = 5.210e-27
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNMHGNN--------ADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM V++  M  N+        +D+E   SLL R   G+ D +    L+N++P WN + Q++VLNFHGRVTQASVKNFQ +V  D  + I +QFGR   + F+MD+  P+ PLQA AITL+SFD K
Sbjct:  202 LGFKGPRKMTVIIPGMMENDERVCIRPKSDIE---SLLSRYENGNTDNLV--CLMNKSPSWNEQTQSYVLNFHGRVTQASVKNFQ-IVHPDNEDYIVMQFGRVAEDVFSMDYSFPMCPLQAFAITLSSFDGK 327

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A8C7VTQ9_ONCMY (Tub domain-containing protein n=4 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7VTQ9_ONCMY)

HSP 1 Score: 111 bits (278), Expect = 5.300e-27
Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNMHGNN--------ADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM VV+  M  N+        +D+E   SLL R   G+ D +    L+N++P WN + Q++VLNFHGRVTQASVKNFQ +V  D  + I +QFGR   + F+MD+  P+ PLQA AITL+SFD K
Sbjct:  224 LGFKGPRKMTVVIPGMMENDERVCIRPKSDIE---SLLSRYENGNTDNLV--CLMNKSPSWNEQTQSYVLNFHGRVTQASVKNFQ-IVHPDNEDYIVMQFGRVAEDVFSMDYSFPMCPLQAFAITLSSFDGK 349

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: UPI0018A7711A (tubby protein homolog n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7711A)

HSP 1 Score: 109 bits (273), Expect = 5.470e-27
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNMHGNNADVEAETS-----LLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM VVL  M  ++  VE   S     L+ R    ++D + E  L N+ P WN   Q++VLNFHGRVTQASVKNFQ+V + DV E I +QFGR   + FTMD+ +P+  LQA  I L+SFD K
Sbjct:  133 LGFKGPRKMTVVLPGMTADHQRVEFRASGEHDSLIDRWKSKNMDQLIE--LCNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIVHESDV-EYIIMQFGRVAEDVFTMDYRYPMCALQAFGIALSSFDSK 258

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BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Match: A0A267GJS6_9PLAT (Tubby-like protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GJS6_9PLAT)

HSP 1 Score: 112 bits (281), Expect = 6.070e-27
Identity = 67/133 (50.38%), Postives = 83/133 (62.41%), Query Frame = 1

Query:    1 LRYDGPRKMRVVLGNM----HGNNADVEA-----ETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 372
            L + GPRKM VVL  M     G+   V+      E  L+ R+ R  +  + E  L NR P WN + Q++VLNFHGRVTQASVKNFQ+V   DV +QI +QFGR   + FTMDF +PL PLQA  I L+SFD K
Sbjct:  310 LGFRGPRKMTVVLPAMLEAEEGDCVRVDIRPNSEEEGLVERLKRREMSHLME--LHNRTPVWNEETQSYVLNFHGRVTQASVKNFQIVRDNDV-DQIVMQFGRISDDLFTMDFAYPLCPLQAFGIALSSFDSK 439

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig16228.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LE99_9PHAE	1.040e-72	94.31	Myosin motor domain-containing protein n=2 Tax=Ect...	[more]
C9K4U6_SACJA	3.170e-71	92.68	Unconventional myosin n=1 Tax=Saccharina japonica ...	[more]
A0A835YUJ6_9STRA	5.800e-36	59.52	Tub domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A1I8FYP7_9PLAT	2.310e-28	50.38	Tubby-like protein n=1 Tax=Macrostomum lignano Tax...	[more]
A0A673YEX6_SALTR	2.920e-27	48.48	Si:dkey-220f10.4 n=2 Tax=Salmoninae TaxID=504568 R...	[more]
A0A369RWL4_9METZ	3.640e-27	49.61	Tubby-like protein n=2 Tax=Trichoplax TaxID=10227 ...	[more]
A0A8C7H983_ONCKI	5.210e-27	47.73	Si:dkey-220f10.4 n=1 Tax=Oncorhynchus kisutch TaxI...	[more]
A0A8C7VTQ9_ONCMY	5.300e-27	48.48	Tub domain-containing protein n=4 Tax=Oncorhynchus...	[more]
UPI0018A7711A	5.470e-27	48.84	tubby protein homolog n=1 Tax=Penaeus monodon TaxI...	[more]
A0A267GJS6_9PLAT	6.070e-27	50.38	Tubby-like protein (Fragment) n=3 Tax=Macrostomum ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig16228	contig	H-paniculata_contig16228:1455..3043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	231.1
Seed ortholog evalue	2.7e-58
Seed eggNOG ortholog	2880.D7G0D6
Preferred name	MYO19
KEGG ko	ko:K10356,ko:K10357,ko:K22366
Hectar predicted targeting category	other localisation
GOs	GO:0000001,GO:0000003,GO:0000011,GO:0000131,GO:0000132,GO:0000146,GO:0000149,GO:0000166,GO:0000226,GO:0000278,GO:0000281,GO:0000302,GO:0000331,GO:0000902,GO:0000904,GO:0000910,GO:0000912,GO:0000915,GO:0001101,GO:0001558,GO:0001654,GO:0001676,GO:0001726,GO:0001745,GO:0001750,GO:0001751,GO:0001754,GO:0001891,GO:0001931,GO:0001942,GO:0002250,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002443,GO:0002449,GO:0002456,GO:0002460,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0002790,GO:0003006,GO:0003008,GO:0003014,GO:0003091,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005102,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005524,GO:0005543,GO:0005546,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005773,GO:0005794,GO:0005826,GO:0005829,GO:0005856,GO:0005882,GO:0005884,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006082,GO:0006403,GO:0006582,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006897,GO:0006904,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007031,GO:0007033,GO:0007049,GO:0007097,GO:0007107,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007272,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007317,GO:0007349,GO:0007399,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007584,GO:0007600,GO:0007601,GO:0007610,GO:0007626,GO:0008021,GO:0008064,GO:0008088,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008289,GO:0008298,GO:0008360,GO:0008361,GO:0008366,GO:0008544,GO:0008610,GO:0009058,GO:0009267,GO:0009306,GO:0009506,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009826,GO:0009856,GO:0009860,GO:0009887,GO:0009888,GO:0009908,GO:0009914,GO:0009932,GO:0009966,GO:0009987,GO:0009991,GO:0010015,GO:0010026,GO:0010033,GO:0010035,GO:0010053,GO:0010054,GO:0010090,GO:0010091,GO:0010154,GO:0010243,GO:0010256,GO:0010522,GO:0010564,GO:0010639,GO:0010646,GO:0010720,GO:0010769,GO:0010770,GO:0010817,GO:0010821,GO:0010959,GO:0010970,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0014910,GO:0014911,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016028,GO:0016043,GO:0016049,GO:0016050,GO:0016053,GO:0016192,GO:0016197,GO:0016358,GO:0016459,GO:0016460,GO:0016461,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017022,GO:0017075,GO:0017076,GO:0017111,GO:0017137,GO:0017157,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019905,GO:0019953,GO:0019954,GO:0021700,GO:0022008,GO:0022402,GO:0022404,GO:0022405,GO:0022406,GO:0022412,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0022622,GO:0022898,GO:0023051,GO:0023052,GO:0023061,GO:0030010,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030046,GO:0030048,GO:0030050,GO:0030054,GO:0030072,GO:0030073,GO:0030104,GO:0030133,GO:0030139,GO:0030141,GO:0030154,GO:0030175,GO:0030182,GO:0030307,GO:0030318,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030516,GO:0030554,GO:0030587,GO:0030659,GO:0030705,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0030899,GO:0031032,GO:0031033,GO:0031034,GO:0031090,GO:0031097,GO:0031152,GO:0031154,GO:0031175,GO:0031252,GO:0031254,GO:0031256,GO:0031267,GO:0031268,GO:0031270,GO:0031333,GO:0031344,GO:0031346,GO:0031410,GO:0031475,GO:0031585,GO:0031589,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031941,GO:0031965,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031987,GO:0032009,GO:0032027,GO:0032060,GO:0032153,GO:0032155,GO:0032252,GO:0032271,GO:0032272,GO:0032400,GO:0032401,GO:0032402,GO:0032409,GO:0032412,GO:0032432,GO:0032433,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032593,GO:0032787,GO:0032796,GO:0032868,GO:0032869,GO:0032870,GO:0032878,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032982,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033267,GO:0033275,GO:0033298,GO:0033365,GO:0033554,GO:0034461,GO:0034613,GO:0034622,GO:0034642,GO:0034643,GO:0034762,GO:0034765,GO:0035091,GO:0035254,GO:0035255,GO:0035618,GO:0035619,GO:0035639,GO:0035690,GO:0035838,GO:0036094,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040001,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0040019,GO:0042051,GO:0042052,GO:0042221,GO:0042303,GO:0042330,GO:0042438,GO:0042440,GO:0042461,GO:0042462,GO:0042470,GO:0042476,GO:0042493,GO:0042542,GO:0042552,GO:0042592,GO:0042594,GO:0042623,GO:0042633,GO:0042641,GO:0042642,GO:0042759,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043005,GO:0043008,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043197,GO:0043200,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043269,GO:0043325,GO:0043332,GO:0043434,GO:0043436,GO:0043473,GO:0043531,GO:0043588,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044297,GO:0044309,GO:0044380,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044550,GO:0044703,GO:0044706,GO:0044764,GO:0044837,GO:0044877,GO:0045033,GO:0045111,GO:0045165,GO:0045177,GO:0045179,GO:0045184,GO:0045202,GO:0045335,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045856,GO:0045921,GO:0045927,GO:0045995,GO:0046148,GO:0046189,GO:0046394,GO:0046530,GO:0046677,GO:0046683,GO:0046847,GO:0046872,GO:0046879,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0047497,GO:0048066,GO:0048193,GO:0048232,GO:0048278,GO:0048306,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048364,GO:0048366,GO:0048367,GO:0048438,GO:0048467,GO:0048468,GO:0048469,GO:0048471,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048592,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048770,GO:0048812,GO:0048813,GO:0048814,GO:0048820,GO:0048827,GO:0048856,GO:0048858,GO:0048868,GO:0048869,GO:0048870,GO:0048871,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050773,GO:0050775,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050808,GO:0050848,GO:0050877,GO:0050878,GO:0050891,GO:0050896,GO:0050900,GO:0050931,GO:0050953,GO:0050982,GO:0051015,GO:0051017,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051279,GO:0051282,GO:0051285,GO:0051286,GO:0051293,GO:0051294,GO:0051301,GO:0051302,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051640,GO:0051641,GO:0051643,GO:0051645,GO:0051646,GO:0051647,GO:0051648,GO:0051649,GO:0051650,GO:0051653,GO:0051654,GO:0051656,GO:0051674,GO:0051686,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051875,GO:0051904,GO:0051905,GO:0051924,GO:0051960,GO:0051962,GO:0055037,GO:0055044,GO:0060001,GO:0060002,GO:0060151,GO:0060281,GO:0060282,GO:0060284,GO:0060327,GO:0060328,GO:0060341,GO:0060429,GO:0060560,GO:0060627,GO:0060996,GO:0060997,GO:0061024,GO:0061387,GO:0061458,GO:0061572,GO:0061573,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070382,GO:0070648,GO:0070649,GO:0070650,GO:0070727,GO:0070887,GO:0070938,GO:0071229,GO:0071230,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071496,GO:0071520,GO:0071563,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071889,GO:0071944,GO:0071963,GO:0071976,GO:0072330,GO:0072384,GO:0072657,GO:0072659,GO:0072676,GO:0072678,GO:0072697,GO:0080147,GO:0090066,GO:0090140,GO:0090426,GO:0090436,GO:0090558,GO:0090567,GO:0090596,GO:0090626,GO:0090627,GO:0090702,GO:0090726,GO:0097061,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097447,GO:0097458,GO:0097518,GO:0097574,GO:0097575,GO:0097708,GO:0097718,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098773,GO:0098793,GO:0098794,GO:0098805,GO:0098840,GO:0098858,GO:0098862,GO:0098916,GO:0099080,GO:0099081,GO:0099089,GO:0099111,GO:0099118,GO:0099120,GO:0099173,GO:0099402,GO:0099503,GO:0099512,GO:0099513,GO:0099515,GO:0099518,GO:0099536,GO:0099537,GO:0099568,GO:0099640,GO:0099738,GO:0106027,GO:0110009,GO:0110053,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0120104,GO:0120117,GO:0140027,GO:0140029,GO:0140056,GO:0150034,GO:1900006,GO:1900076,GO:1900078,GO:1901019,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901981,GO:1902407,GO:1902410,GO:1902531,GO:1902716,GO:1902850,GO:1902875,GO:1902877,GO:1902903,GO:1902904,GO:1902936,GO:1903047,GO:1903076,GO:1903078,GO:1903119,GO:1903169,GO:1903260,GO:1903429,GO:1903431,GO:1903475,GO:1903478,GO:1903479,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903827,GO:1903829,GO:1904062,GO:1904375,GO:1904377,GO:1904580,GO:1904582,GO:1904601,GO:1904752,GO:1904754,GO:1905392,GO:1905429,GO:1905430,GO:1905475,GO:1905477,GO:1905879,GO:1905881,GO:1990151,GO:1990753,GO:1990778,GO:1990819,GO:1990896,GO:1990904,GO:2000026,GO:2000145,GO:2000147,GO:2000241,GO:2000243,GO:2000689,GO:2000769,GO:2001257
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5022@1,KOG0160@2759,KOG2502@1,KOG2502@2759
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01009,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Exons	3
Model size	375
Cds size	351
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig16228.3585.1	prot_H-paniculata_contig16228.3585.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig16228 1479..3043 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929296.5481796-UTR-H-paniculata_contig16228:1454..1478	1622929296.5481796-UTR-H-paniculata_contig16228:1454..1478	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig16228 1455..1478 +
1691480804.9829948-UTR-H-paniculata_contig16228:1454..1478	1691480804.9829948-UTR-H-paniculata_contig16228:1454..1478	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig16228 1455..1478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929296.5649207-CDS-H-paniculata_contig16228:1478..1622	1622929296.5649207-CDS-H-paniculata_contig16228:1478..1622	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 1479..1622 +
1691480805.008432-CDS-H-paniculata_contig16228:1478..1622	1691480805.008432-CDS-H-paniculata_contig16228:1478..1622	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 1479..1622 +
1622929296.5788107-CDS-H-paniculata_contig16228:2044..2212	1622929296.5788107-CDS-H-paniculata_contig16228:2044..2212	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 2045..2212 +
1691480805.0285249-CDS-H-paniculata_contig16228:2044..2212	1691480805.0285249-CDS-H-paniculata_contig16228:2044..2212	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 2045..2212 +
1622929296.5915592-CDS-H-paniculata_contig16228:3004..3043	1622929296.5915592-CDS-H-paniculata_contig16228:3004..3043	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 3005..3043 +
1691480805.0392911-CDS-H-paniculata_contig16228:3004..3043	1691480805.0392911-CDS-H-paniculata_contig16228:3004..3043	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig16228 3005..3043 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig16228:1455..3043+
coding sequence from alignment at H-paniculata_contig16228:1455..3043+

protein sequence of mRNA_H-paniculata_contig16228.3585.1

>prot_H-paniculata_contig16228.3585.1 ID=prot_H-paniculata_contig16228.3585.1|Name=mRNA_H-paniculata_contig16228.3585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MRVVLGNMHGNNADVEAETSLLHRMLRGSLDAIEEPVLVNRNPRWNAKVQ
AFVLNFHGRVTQASVKNFQLVVQGDVSEQITLQFGRTHTNEFTMDFCHPL
SPLQALAITLTSFDCK*

mRNA from alignment at H-paniculata_contig16228:1455..3043+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig16228.3585.1 ID=mRNA_H-paniculata_contig16228.3585.1|Name=mRNA_H-paniculata_contig16228.3585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-paniculata_contig16228:1455..3043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAGGTACGATGGACCACGCAAGATGCGCGTGGTCTTAGGCAACATGCA
CGGAAATAATGCCGACGTGGAAGCTGAGACTTCGCTGCTGCATCGCATGC
TTCGAGGCAGTCTTGATGCGATCGAGGAACCCGTCCTGGTCAACAGGAAT
CCACGCTGGAATGCCAAGGTATCAATATTTGCCTTATTTTCTTTTTTTCC
CCCTCACATTAGATATGTGATCACTTCGTTGAATCCCGTTGATCATGAGA
GTCGAAGAGGCCCACGCTACACACATTCTTGTAGCGCATCCAGAAGGGGT
AAAAGCATCATCGGTGTTCGCAACAAGTTGCAATTGGATTTAGGCGCACA
CCGCTGACCTCAGACAACAAATTCAGGTCAGTCATCCATCTCTTGACCGT
CATAATTTCACTCGGATTTGTCACGATGTAGGTGAACCTGTCGGTGAGGG
TCCCACCGGTACGATCTTGTGACAGGTAAATTTCTCGTATCTTCTGGTCG
TGTGTGTACCGGTAGAGTTGATATTACTTTTCTTGACCCCATCCTACTTT
TTCCTCTGCGGTACTCCCTCGTCTTTTGGAAACTCTGTAGGTCCAGGCAT
TTGTCCTCAACTTCCACGGAAGGGTGACCCAGGCAAGCGTCAAGAACTTT
CAGCTGGTGGTGCAGGGCGATGTATCGGAGCAGATCACCCTTCAGTTCGG
GCGGACGCACACGAACGAGTTCACCATGGACTTTTGTCACCCGTTGTCAC
CACTTCAGGTATTGTGTGTCTGGTGTCTTGTGTCGTGTGTGCGAGCATTG
TGCGTTTCTTTTTATTCTTGTTTATTATTTTTGGTGTGCTTTTTTCATTG
CGCTCTGGGTAGGTCGCTGGAGTTTTGAAAATTTTACTCTCCAGATGAAA
ACAGATCCTTCCTACAGAGGAGGCGTGTTCAATGGTCTAACAAGTACGGT
ATGCAAATCGTTCGTGCGCCCCTCTTCCCCCCCCCCCCCTCCCTCCCCTC
GGAGGACCACGAATACATCGAATGCTCAAGGTCTCAAGAAAGAGTATTGG
TCTAACTTTCAGCATGCGCGGGATGGATGATGGTACATGCAATCAAGTGT
TGACCCCTGTGTATTCGTTTTACTTTTCGTTACTCGGAGCAGTCGTAACC
GGTTCGGGGAACCTGCTCGCTGATGCGGAAGCTGAAGCTTCAGGAGAAAC
ACTTTCGACTGCTCCTGAGTATTCGTTCGAGGGTTCAATGTCATGATCGA
ATGGAAGAAGATTTGTTGTCAACCATGTCATTGCCTTAAATGGAGGTCTG
TGCTGTTTTAGCTGTATTAGTGGAGCCTTCAATCTGTTTGACGGAGTCAC
AGTTAGATATTCAGGACGTGGAAATTAGATGCACACTGTACCATGGGGCC
CACTTTTGCAGTCGAATTTCAATGGAATCTCTCACCTGAGATAAATACTG
CAGACACAACCAACTCAACATAACCCGCTTCCCATGATACCTTGACCCCC
CCCTCCCCCTCCCCCCCCTCGAACCTTCCTGCTCCGCGCGTTATGAAAAG
GCGTTGGCGATCACTCTGACGAGCTTCGACTGCAAGTAA

Coding sequence (CDS) from alignment at H-paniculata_contig16228:1455..3043+

>mRNA_H-paniculata_contig16228.3585.1 ID=mRNA_H-paniculata_contig16228.3585.1|Name=mRNA_H-paniculata_contig16228.3585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig16228:1455..3043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGTGGTCTTAGGCAACATGCACGGAAATAATGCCGACGTGGAAGC
TGAGACTTCGCTGCTGCATCGCATGCTTCGAGGCAGTCTTGATGCGATCG
AGGAACCCGTCCTGGTCAACAGGAATCCACGCTGGAATGCCAAGATGCGC
GTGGTCTTAGGCAACATGCACGGAAATAATGCCGACGTGGAAGCTGAGAC
TTCGCTGCTGCATCGCATGCTTCGAGGCAGTCTTGATGCGATCGAGGAAC
CCGTCCTGGTCAACAGGAATCCACGCTGGAATGCCAAGGTCCAGGCATTT
GTCCTCAACTTCCACGGAAGGGTGACCCAGGCAAGCGTCAAGAACTTTCA
GCTGGTGGTGCAGGGCGATGTATCGGAGCAGATCACCCTTCAGTTCGGGC
GGACGCACACGAACGAGTTCACCATGGACTTTTGTCACCCGTTGTCACCA
CTTCAGGTCCAGGCATTTGTCCTCAACTTCCACGGAAGGGTGACCCAGGC
AAGCGTCAAGAACTTTCAGCTGGTGGTGCAGGGCGATGTATCGGAGCAGA
TCACCCTTCAGTTCGGGCGGACGCACACGAACGAGTTCACCATGGACTTT
TGTCACCCGTTGTCACCACTTCAGGCGTTGGCGATCACTCTGACGAGCTT
CGACTGCAAGTAAGCGTTGGCGATCACTCTGACGAGCTTCGACTGCAAGT
AA