mRNA_H-paniculata_contig16212.3576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16212.3576.1
Unique NamemRNA_H-paniculata_contig16212.3576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: D7FY29_ECTSI (Adenosylmethionine decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY29_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 4.620e-109
Identity = 170/249 (68.27%), Postives = 194/249 (77.91%), Query Frame = 1 
Query:   16 MAWPTLTARDAPRRDRAGDLSGMWGMAAAKGVQESAEQSVDQSPSGDGGEGRGPTGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYKSDEVR 762
            MAWP     + P  + +G      G  A  G +     S++        EGRG  G FEGPEKTLEIEF+P VGH++GLRA+RREQWDAILEQAQC ILH RGN+ FDSYVLSESSLFVY  KLVLKTCGTTTLLRCLPLLTVV+K+YGLNLEWIGYSRK+FTFPTDQ       YPH SFA+EVDFLQ MF+GSAYVHGPLNSDHWYTYVADD K+  +A ADRTLN+MMYDLEPEVA+NFYK+D+++
Sbjct:    1 MAWPAQMVVE-PGDEISGLPEEGNGQPAPTGTRTGPASSLENQ------EGRGQQG-FEGPEKTLEIEFEPDVGHEEGLRAIRREQWDAILEQAQCHILHQRGNDHFDSYVLSESSLFVYKSKLVLKTCGTTTLLRCLPLLTVVSKNYGLNLEWIGYSRKNFTFPTDQT------YPHTSFAEEVDFLQGMFSGSAYVHGPLNSDHWYTYVADDCKKSTNAAADRTLNMMMYDLEPEVAQNFYKTDKIQ 235
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: D7G8P6_ECTSI (Adenosylmethionine decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8P6_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 8.140e-64
Identity = 119/247 (48.18%), Postives = 158/247 (63.97%), Query Frame = 1 
Query:   34 TARDAPRRDRA--GDLSGMWGMAAAKGVQESAEQSVDQSPSGDGGEGRGPTGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLP-LLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQT------MFTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYK 747
            ++ DAP    A   DLS   G       ++     VD S +GDG E R  TG FEGPEKTLE+ F P +G+ QG RA+ R+  D +  +A+C ILH   N+  D+YVLSESSLFVY HK+V+KTCGTTTLLRC+  LL    +  GL LEW+GYSRK+FTFP+DQ      ++PH+SF QE+ +L+          G+ YV GP+  DHW+ Y+AD   RPD    DRT+N+MM+D+ P+ A++FYK
Sbjct:   37 SSSDAPETSSATVSDLSDSGG-------EDDVLTKVD-SQAGDGEE-REYTGCFEGPEKTLEVCFKPGIGNPQGCRALTRQSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLQAALEQQGLVLEWMGYSRKNFTFPSDQ------LFPHSSFEQELQYLRAHTHLEKRLNGAGYVLGPVTGDHWFVYIADKCDRPDYTATDRTINMMMFDMHPDTAKHFYK 268
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: A0A2R5GFL0_9STRA (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFL0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.830e-61
Identity = 106/199 (53.27%), Postives = 140/199 (70.35%), Query Frame = 1 
Query:  184 GFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTM-------FTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYKSDEV 759
            GFEGPEK LEI+F+P++G  + LR V RE WDAIL+ A+CQIL    NE  D+YVLSESSLFVY+HK+ +KTCGTTTLLRCLPLL  V +S GL L+WIGY+RK+F FP DQ       +PH+SFAQE+++ +           G AY+ G L +DHWY YVAD     + + ++R +N+MMYDL+ +V + FY+  E+
Sbjct:   52 GFEGPEKILEIDFNPSMG--KSLREVNRETWDAILDLARCQILSKMSNEFLDAYVLSESSLFVYSHKVFIKTCGTTTLLRCLPLLLKVAESRGLELQWIGYTRKNFIFPDDQE------FPHSSFAQEIEYTKKCRGPQGGALNGGAYILGDLLADHWYVYVADYCGDANQS-SERNVNIMMYDLDIDVCQGFYRQPEL 241
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: A0A835ZL65_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL65_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.910e-60
Identity = 105/199 (52.76%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:  178 TGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLP-LLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQ------TMFTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYKSD 753
            TG FEGPEKTLE+ F P VG + G RA+ R Q D I ++A+C IL    N   D+YVLSESSLFVY HK+V+KTCGTTTLLRC+  LL    +  G+ LEW+GYSRK+FTFP DQ      +YPHASF QE+D+L+          GS +V GP+  DHW+ YVAD   RP+    DR +N+MM+DL P+ A  F + D
Sbjct:   93 TGFFEGPEKTLEVCFKPGVGDQHGCRALTRAQLDQICKRARCTILSRMSNAHLDAYVLSESSLFVYRHKVVVKTCGTTTLLRCIAYLLQHAGRGLGMELEWVGYSRKNFTFPGDQ------LYPHASFEQELDYLRQHQHLSARLDGSGHVLGPVTGDHWFVYVADKYDRPNFTATDRVINIMMFDLHPDCAAKFVRGD 285
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: A0A484E2K2_BRELC (Adenosylmethionine decarboxylase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2K2_BRELC)

HSP 1 Score: 199 bits (507), Expect = 1.420e-58
Identity = 103/205 (50.24%), Postives = 134/205 (65.37%), Query Frame = 1 
Query:  187 FEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFT-GSAYVHGPLNSDHWYTYV--ADDGKRP------------DSAVADRTLNLMMYDLEPEVARNFYKSDE 756
            FEGPEK LEI+F   VGH +GLR V R   D +LE  QCQIL    NE  D+YVLSESS+F+Y HK+VLKTCGTTTLL+CLP +   ++  GL++EW+ YSRK++TFP +Q       YPH SF  EV FL + F  GSA+V GPLN DHWY Y   AD  ++P            ++A  + TL ++M D+ P+VA+ F+KS +
Sbjct:   31 FEGPEKNLEIDFKAGVGHVRGLREVPRHNLDEMLEAGQCQILSRTSNEHIDAYVLSESSMFIYTHKIVLKTCGTTTLLKCLPFIKTFSEHLGLSIEWVSYSRKNYTFPEEQK------YPHTSFHTEVAFLSSFFPDGSAHVLGPLNHDHWYIYAWDADIHEQPASRTQSPSYSLKETAANESTLQILMQDMHPKVAKQFFKSTD 229
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: A0A835YIR2_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR2_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.830e-58
Identity = 108/210 (51.43%), Postives = 135/210 (64.29%), Query Frame = 1 
Query:  151 GDGGEGRGPTGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYG---LNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQ------TMFTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYKSD 753
            GD  E R  TG FEGPEKTLE+ F P VG  +G RA+ REQ D I ++A+C IL    N   D+YVLSESSLFVY +K+V+KTCGTTTLLRC+  L     ++G   L LEW+GYSRK+FTFP DQ      +YPHASF QE+ +L+          GS +V GP+  DHW+ YVAD   RP+    DR  N+MM+D+ PE A  F + D
Sbjct:   31 GDDDEEREYTGCFEGPEKTLEVCFKPGVGDARGCRALTREQLDQICKRARCTILSRMSNAHLDAYVLSESSLFVYRYKVVIKTCGTTTLLRCVAYLLQHAGAHGGLGLELEWVGYSRKNFTFPGDQ------LYPHASFEQELAYLRQHQHLSARLDGSGHVLGPVTGDHWFVYVADKYDRPNFTATDRICNIMMFDMHPESAACFVRDD 234
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: W7T3C1_9STRA (Adenosylmethionine decarboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3C1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.480e-58
Identity = 103/195 (52.82%), Postives = 131/195 (67.18%), Query Frame = 1 
Query:  181 GGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQT------MFTGSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYK 747
            G FEGPEKTLE+ F P VGH +G R + R Q D +  +A+C IL+   N   D+YVLSESSLFV+  K++LKTCGTTTLLRCLP L   T + GL LEW+GYSRK+++FP DQA      +PH+SF QE+ +L++         GS YV GP+  DH+Y YVAD   RP     DR LN+MM+D++PE A  FYK
Sbjct:  127 GCFEGPEKTLEVCFKPGVGHARGCRELTRRQLDVLCRKARCTILNQMSNAYQDAYVLSESSLFVWPFKMMLKTCGTTTLLRCLPRLLRYTAALGLELEWVGYSRKNYSFPGDQA------FPHSSFDQELSYLRSHSKLSAKLNGSGYVLGPVTGDHFYVYVADQCVRPSYECHDRVLNIMMFDMDPEAAAVFYK 315
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: M4BIM5_HYAAE (Adenosylmethionine decarboxylase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIM5_HYAAE)

HSP 1 Score: 197 bits (500), Expect = 2.180e-57
Identity = 102/206 (49.51%), Postives = 129/206 (62.62%), Query Frame = 1 
Query:  187 FEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFT-GSAYVHGPLNSDHWYTYVADDGKRPDSAVAD---------------RTLNLMMYDLEPEVARNFYKSDE 756
            FEGPEK LEI+F   VGH +GLR V R+  D +LE  QCQIL    NE  D+YVLSESS+F+Y HK+VLKTCGTTTLL+CLP +    +  GL +EW+ YSRK++TFP +Q       YPH SF  EV FL + F  GSA+V GPLN DHWY Y  D       +V D                TL+++M D+ P VA+ F+KS++
Sbjct:   23 FEGPEKNLEIDFKNGVGHARGLREVSRQDLDEMLEAGQCQILSRISNEHIDAYVLSESSMFIYAHKIVLKTCGTTTLLKCLPFIKTFAERLGLEIEWVNYSRKNYTFPEEQK------YPHTSFQTEVAFLSSYFPDGSAHVLGPLNHDHWYIYAWDADIHEHQSVTDVLIHPGMGKELGANESTLHVLMQDMHPSVAKQFFKSND 222
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: A0A5A8CY83_CAFRO (Adenosylmethionine decarboxylase n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CY83_CAFRO)

HSP 1 Score: 196 bits (498), Expect = 2.940e-56
Identity = 102/190 (53.68%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:  175 PTGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFT-GSAYVHGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNF 741
            P  GFEGPEKT+EI+F P VG   GLRAV RE WDAIL  A C IL        D+YVLSESSLFV +HKL++KTCGTTTLL  LP +    +  GL +EW+ YSRKDF FP  Q       +PH S  +E+ FL+  F  G A+V GP+  DHW+ + AD  +RP   + DRTLNLMMYD+ PE A  F
Sbjct:   22 PLPGFEGPEKTIEIDFVPGVGPADGLRAVTRESWDAILAHAACTILVEHRAPTIDAYVLSESSLFVMSHKLLIKTCGTTTLLLVLPEVLKAAEELGLKVEWLCYSRKDFLFPKHQK------FPHRSMQEEISFLRKYFPDGHAHVLGPVTRDHWFVFTADRCERPSEDLTDRTLNLMMYDIAPETAACF 205
[Close]
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Match: H3GXV0_PHYRM (S-adenosylmethionine decarboxylase proenzyme n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3GXV0_PHYRM)

HSP 1 Score: 193 bits (491), Expect = 3.210e-56
Identity = 102/203 (50.25%), Postives = 130/203 (64.04%), Query Frame = 1 
Query:  187 FEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQILHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSYGLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFT-GSAYVHGPLNSDHWYTYV--ADDGKRPDSAVA----------DRTLNLMMYDLEPEVARNFYKSDE 756
            FEGPEK LEI+F   VGH +G R V R   D +LE  QCQIL    NE  D+YVLSESSLFVY HK+VLKTCGTTTLL+CLP +   ++  GL++EW+ YSRK++TFP +Q       YPH SF  EV FL + F  GSA+V GPLN DHWY Y   AD    P +             + TL+++M D+ P VA+ F+K+++
Sbjct:   31 FEGPEKNLEIDFKHGVGHPRGFREVARADLDEMLEAGQCQILSRTSNEHIDAYVLSESSLFVYAHKVVLKTCGTTTLLKCLPFIKTFSERLGLSIEWVNYSRKNYTFPEEQK------YPHTSFQTEVAFLSSYFPDGSAHVLGPLNRDHWYIYAWDADIHGEPGALTHNYALEEPGQNESTLHVLMQDMHPSVAKQFFKNND 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16212.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY29_ECTSI4.620e-10968.27Adenosylmethionine decarboxylase n=2 Tax=Ectocarpu... [more]
D7G8P6_ECTSI8.140e-6448.18Adenosylmethionine decarboxylase n=2 Tax=Ectocarpu... [more]
A0A2R5GFL0_9STRA2.830e-6153.27S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]
A0A835ZL65_9STRA2.910e-6052.76Adenosylmethionine decarboxylase n=1 Tax=Tribonema... [more]
A0A484E2K2_BRELC1.420e-5850.24Adenosylmethionine decarboxylase n=1 Tax=Bremia la... [more]
A0A835YIR2_9STRA1.830e-5851.43Adenosylmethionine decarboxylase n=1 Tax=Tribonema... [more]
W7T3C1_9STRA3.480e-5852.82Adenosylmethionine decarboxylase n=2 Tax=Monodopsi... [more]
M4BIM5_HYAAE2.180e-5749.51Adenosylmethionine decarboxylase n=1 Tax=Hyalopero... [more]
A0A5A8CY83_CAFRO2.940e-5653.68Adenosylmethionine decarboxylase n=3 Tax=Sar TaxID... [more]
H3GXV0_PHYRM3.210e-5650.25S-adenosylmethionine decarboxylase proenzyme n=21 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16212contigH-paniculata_contig16212:907..5575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue1e-54
Seed eggNOG ortholog2880.D7G8P6
Preferred nameAMD1
KEGG rclassRC00299
KEGG koko:K01581,ko:K01611,ko:K15203
KEGG ReactionR00178,R00670
KEGG Pathwayko00270,ko00330,ko00480,ko01100,ko01110,ko01130,map00270,map00330,map00480,map01100,map01110,map01130
KEGG ModuleM00034,M00133,M00134
Hectar predicted targeting categoryother localisation
GOsGO:0001701,GO:0003674,GO:0003824,GO:0004014,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0015939,GO:0015940,GO:0016032,GO:0016053,GO:0016458,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0019058,GO:0019079,GO:0019222,GO:0019752,GO:0019808,GO:0019810,GO:0032501,GO:0032502,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0042401,GO:0042742,GO:0043009,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046500,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0070405,GO:0071704,GO:0072330,GO:0097164,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.S-adenosylmethioninamine biosynthetic process
EggNOG OGsKOG0788@1,KOG0788@2759
EC4.1.1.17,4.1.1.50
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021
Exons4
Model size762
Cds size753
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16212.3576.1prot_H-paniculata_contig16212.3576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16212 916..5575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.3296168-UTR-H-paniculata_contig16212:906..9151622929295.3296168-UTR-H-paniculata_contig16212:906..915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16212 907..915 +
1691480804.3576748-UTR-H-paniculata_contig16212:906..9151691480804.3576748-UTR-H-paniculata_contig16212:906..915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16212 907..915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.3422854-CDS-H-paniculata_contig16212:915..12001622929295.3422854-CDS-H-paniculata_contig16212:915..1200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 916..1200 +
1691480804.3745587-CDS-H-paniculata_contig16212:915..12001691480804.3745587-CDS-H-paniculata_contig16212:915..1200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 916..1200 +
1622929295.362208-CDS-H-paniculata_contig16212:3161..32891622929295.362208-CDS-H-paniculata_contig16212:3161..3289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 3162..3289 +
1691480804.38459-CDS-H-paniculata_contig16212:3161..32891691480804.38459-CDS-H-paniculata_contig16212:3161..3289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 3162..3289 +
1622929295.378245-CDS-H-paniculata_contig16212:3986..41011622929295.378245-CDS-H-paniculata_contig16212:3986..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 3987..4101 +
1691480804.3930967-CDS-H-paniculata_contig16212:3986..41011691480804.3930967-CDS-H-paniculata_contig16212:3986..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 3987..4101 +
1622929295.3966694-CDS-H-paniculata_contig16212:5350..55751622929295.3966694-CDS-H-paniculata_contig16212:5350..5575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 5351..5575 +
1691480804.4042208-CDS-H-paniculata_contig16212:5350..55751691480804.4042208-CDS-H-paniculata_contig16212:5350..5575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16212 5351..5575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16212.3576.1

>prot_H-paniculata_contig16212.3576.1 ID=prot_H-paniculata_contig16212.3576.1|Name=mRNA_H-paniculata_contig16212.3576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MDMAWPTLTARDAPRRDRAGDLSGMWGMAAAKGVQESAEQSVDQSPSGDG
GEGRGPTGGFEGPEKTLEIEFDPAVGHKQGLRAVRREQWDAILEQAQCQI
LHHRGNECFDSYVLSESSLFVYNHKLVLKTCGTTTLLRCLPLLTVVTKSY
GLNLEWIGYSRKDFTFPTDQARLYCSIYPHASFAQEVDFLQTMFTGSAYV
HGPLNSDHWYTYVADDGKRPDSAVADRTLNLMMYDLEPEVARNFYKSDEV
R
back to top

mRNA from alignment at H-paniculata_contig16212:907..5575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16212.3576.1 ID=mRNA_H-paniculata_contig16212.3576.1|Name=mRNA_H-paniculata_contig16212.3576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4669bp|location=Sequence derived from alignment at H-paniculata_contig16212:907..5575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACGGCTAATGGACATGGCCTGGCCAACCCTGACTGCCCGAGACGCACC
GAGGAGAGATCGCGCCGGAGATTTGTCCGGGATGTGGGGGATGGCAGCTG
CCAAGGGCGTTCAGGAATCTGCCGAGCAGTCTGTCGACCAGAGCCCGTCG
GGGGATGGTGGAGAGGGGCGGGGGCCGACGGGGGGATTCGAGGGGCCGGA
GAAAACACTGGAGATAGAGTTTGATCCAGCCGTCGGACACAAGCAAGGGC
TGAGGGCCGTGAGGCGGGAGCAGTGGGATGCTATCCTTGAGCAGGTGTAT
GTTGTTTTGTTTTCGAATGGAGTCCTGTTAACCCGGCTTTTGTCTCCACG
CTGTTGTAGCTTGGGAAGGAGGGGGCTGAGGATAGAGCAGTGGGTTTTCC
TCGAGGGTCAAGATTAAATCTGCAAAAAGAGCCGTAACACCCTTTGATAA
CACACCCCCTGATAGTTTTTTTTTTTTTCAAAGTCGATTTTCTCGACAAT
AAAGTTGCTCGTGACACTGATGGCGGTATTGTTGGAAATAGATCTTTGAG
ATATTTCGATAGACCTGCTGTTTCGGCAGTGCAGGATCTTGCTTCTCGAG
AAAATCGGGTTCGGAAAATAGTATCAGGGGGTGCGATATCTAGGGGTGTT
ACGGTAGGTGAGGGGTGAGAAGAGAATGAGGAGGGTACAATGTTTTTTGG
GATGCAGATTGTCGAGAAGTACTGTTGCCTCGTGTTGCTGTTGTAGTTGT
CAGGTGTAGCCGAAAGGTCTAATACTGGAATCACACCCGTAGAGTTCGAT
TTTTTCGGAAATTCTTTCAGATTTAGCCTCTACGTTGAAATCAAAGGAAA
AATATTCTTGATTCGTTTTATTTTGTTTACTTGAAGAAGAGGGTTCCGGA
GGTTGAGGGGGGGGAATTCTGATATGCGCTTGTTGTTGTTGTTGTAGTTA
TTTTGGTTGCTATTTATGCGCGAAGAAACAAAAAGTTGGTACGGTATACT
GATATATGGTTATGCTCCATCTCCTGCGTTGTGGCGCTCGCTATCCTCCT
CCATGAACGGGACGATCGTCTGGGAAGAGAACCTTCATGCTCAGCAAACG
AGGGTTTTGACTCCGAATAGTTTGTGTCATTGCATCTGTTAATTTAGGCG
ACTGTGTGCGGTAGCGGCGTTAGTGTTAGCGGTACATTGGTTGGTCCGAA
CAAGTTGAGTTCCGGTCTGCTAAAAGTGTGAGCAAGTGAGCTGTGATAAG
CGCTGACAAATCTGCTTTTTAGCCGTATCGGAGTCTGTTTTTTTGGCCTT
ACGCTCAACTTGCGAGTTTTGAAATGAAACGTCGTGCTAGTTTGCCCACA
GTATTATTTTTAAGTACTCATGATACTCGTATCTCAATGCTTCCCAAGTA
CTGTTTAAAGCGAATTGGTAATAACAGAAAAAACAGGATATCTGCGTTGT
TTTCAAGAACTCTTGATGGCTGATGACCTTTTTTGAATTTTTTACATGGA
GGCTAGATCGTATTTACCGGGTAGTATTTAGCGCGTTGCCACCACGCTCT
GAGCGATCGTTACTACTTAGCGCTCTTGCAGCAGTCGTTAATCGTTCTAT
GACCGCGACGTACCGTTCAGATTTTGGCAGCTCCAGAAAGATGCCCACCC
TATAGAGGCGGAGAGGCTACGTCGAACGTCGAACATGTCTGATCGACCTT
TCTTTTTTCCTCGATTTATGCCTACAAACTGTTGGTTAATTCTGCCAGTT
TAATGACTGCTCGCCGTGCGCACGATATCAAGAACGCGGTGGAACACGCG
GAAGACACGCGTTTTTAATAGTTCCTTCTCGGCCAAACAGTTGGTCTGGT
TCTTGTATCGGTTTGTACGTGTGCGATCAACCGATGGGTATCCGCTGTTC
ATGCGATTATCCGTTGTCATACTATATGAACCGTTCAAGTGGTCAAGCAA
CAGTCGTGGTCTTGTCTCTTCAGTGCAGCGTTCGAGGCTAGCTTGGCACT
GTTGTATTTGCCCTCTAGGTGGCTGTCCAATGTTTCATGCATAGACACTT
TTTTGGTTTTCTTTACACATATACTAGGATACGCACATGATATGCAACGT
GAAACTAGTTAAGCAACTTTCTTACCATTCAACAGTTGGAATTCATTGTT
GCATGTCTGTTAATGTTGCGCTATTGTTCCGTCCCATATCACAATATTCT
AACCTTGAACAGTTTTCTCTGCCATTATGATGATCGTGCTTGTTTTTTGT
CGCAGGCACAGTGCCAAATCCTTCACCACAGGGGCAATGAATGTTTCGAT
TCGTACGTGCTCTCTGAGAGTAGCTTATTCGTTTACAACCACAAGCTCGT
GCTCAAGACGTGCGGCACTACCACCCTGCTCAGGTCAGAATGCAAACCAC
GATTAGGATATCTTGAGACGACGATGTCGTCGTGTCTTAAGCGTGCGTTG
CTTGATCTTTATTCTGACGCTTTGAGCACTAGAGGCTCTTTCGGCGCGGA
ACATGATGTGTGTACGGCATCTAGTCAAGAAGGTGGGGCGCTGTAGTTAC
TACGTCTGATTGAATGAAGAGCGCTGGTTCCCTGCCATTTTGGCCTGTCT
TCGAGGCAGGGATTAGATCATGACTAGATAAGAATTGGACGATAGCTAGA
TCGGGGTTAGATAGTGACTAGATAGGGTATGTAAGTCCATCGTGATGATT
GATGCGCCTGACGGGCTAAAAGGATCCTAGCGATTTGCGATACATGTCAT
CGACACCTGTCGTCGGATTGACTGACCTTTTCGTATATATCGTGGGAGTC
TCCAGTCTGCGATTGAGTGGTCATTTTGTTTTTGGGAAATTCCTCCGGTA
GTTCATAGCAATCCGCTTGGGTACAGATCGAGTATTCCGTTGTGGGAATC
GACGTGTAGTCAAAAATCAGTTTCGATCATGAGAGTGCAAACTGGATTCA
GGAATCCCCGAAACCGTCGGCACGGATAGAAAAAACAGTGTGATGAGTGA
TGATCCGTACGCCCCCGCGAGCCTTGACGATGCCGTCGGGTTGTGTTACC
GTTGGACGTCCGTTGAACTACGTTCTCCAGGTGTCTGCCCCTGCTCACCG
TGGTGACTAAAAGCTACGGCCTTAACTTGGAGTGGATCGGGTACTCGAGG
AAAGACTTCACTTTTCCCACGGATCAGGCGAGATTATATTGCAGTGTTGA
TGCAGGTGCATTGTACACTGTGCGCTGGACACACGGATTTGCCTCCGGTA
CGACCTCCAGTCCAGCCCTGTAACGTCGAAGATATGGTCGTTCTGTGGTT
GATACGGGAGGACGGCTCGGTTCAAGTCGTGTAGCGCTAAGAGCTGGTTC
GGAACGGGGGGGGGGGAGGTGATCAGCACACCAGCACAATGTAGAAACGC
GCTTTGGAGATTGAAGATTTGTGTTATGATAAAAGAAGACTTGCAAAAAT
GTGAAGGCTCCCCCATGTTTCATCACCTTCCCAGGGCTTACGCTTGTTTA
TGAGCCCTTGTAGAGATACCTGTTCAGTCACGTTCACTGGTGAGCCTTTC
TGCTGGGAAGTGAAGGTATCTGCCCTTTGACCCCATGATTGATCAGCTCG
TGTACCATGTATGTCGAATTCTATAAAAATAATCAAACTGATTTTGATGT
GGAGTTTGCCGAGGTTCTCGTCGAAATGCACATTCGTGCAAAAGATGACG
GCCCGTGCACTCTCTCACTCCCCTCGTACCTCCCCTGTGGCTTGAAGATA
AAAAAAAAATGTGTGTTGAGTCGATTTTCAATTTTCGAGATTCGTTCCAA
GCCTGAGCTTTTTCATCTGATTTGGCATGGCACACGTTCCGACTACTCGT
GATGGGATTTTGATAGATACCTGGGGATCACCTCGTTATGAGGACATACT
GTCATTCTCCAATCCTGATGTCGAGGTCGTATCTCAAACCCTAAAACAGG
AGGCGAGTAAACATGCGTCAAATGTGAAACGAACCTACGAGCAGATAAAT
AGTTGTATGTCACGGTGGTAACTATTCGAGCTACAGGCTACAAAATAATA
CCTGCGCGCACCTAAAAAAGAGTTCGTGAGCGAGGATGGCTGTCTGTGAT
GTTTGATATCTTTCTACTGGGCTGGCTGTCTGAACAGCGGTTTCCACGCA
ATAAGGTTATGACTTTTTTTTTTTTTAACCCCCGGAAGGCTGAGGTTATG
ACATAAACGTCGTTTTCCCTTTTGTTTGAAAGTGAACGAGTAGATGGCGA
TTCTAGTATACTAGTGGTTGGTTTGTAGATTTCGGTCACACCAGCAGTAT
TGAAATGACTGATCATCTTTCCAATTTTGATTAGAATAGCTTTGAGTTTA
TCTTTTCTTTTTCTTGATTTCTACACGTTTCGAAATATATTTCCGATGTT
GCCGTCGATGCTGTGTCTTCCTGCCCGTCGCCTGCATGCGCCAGATCTAC
CCACACGCGTCGTTCGCGCAGGAAGTGGACTTCCTACAGACTATGTTCAC
TGGCTCTGCCTACGTGCACGGCCCTCTGAACAGCGACCACTGGTACACGT
ATGTCGCGGACGACGGCAAGAGGCCTGACAGTGCCGTGGCCGATCGCACC
CTCAATCTCATGATGTACGACTTGGAGCCTGAGGTGGCCCGGAATTTTTA
CAAGTCCGATGAGGTGCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16212:907..5575+

>mRNA_H-paniculata_contig16212.3576.1 ID=mRNA_H-paniculata_contig16212.3576.1|Name=mRNA_H-paniculata_contig16212.3576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig16212:907..5575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATGGCCTGGCCAACCCTGACTGCCCGAGACGCACCGAGGAGAGA
TCGCGCCGGAGATTTGTCCGGGATGTGGGGGATGGCAGCTGCCAAGGGCG
TTCAGGAATCTGCCGAGCAGTCTGTCGACCAGAGCCCGTCGGGGGATGGT
GGAGAGGGGCGGGGGCCGACGGGGGGATTCGAGGGGCCGGAGAAAACACT
GGAGATAGAGTTTGATCCAGCCGTCGGACACAAGCAAGGGCTGAGGGCCG
TGAGGCGGGAGCAGTGGGATGCTATCCTTGAGCAGATGGACATGGCCTGG
CCAACCCTGACTGCCCGAGACGCACCGAGGAGAGATCGCGCCGGAGATTT
GTCCGGGATGTGGGGGATGGCAGCTGCCAAGGGCGTTCAGGAATCTGCCG
AGCAGTCTGTCGACCAGAGCCCGTCGGGGGATGGTGGAGAGGGGCGGGGG
CCGACGGGGGGATTCGAGGGGCCGGAGAAAACACTGGAGATAGAGTTTGA
TCCAGCCGTCGGACACAAGCAAGGGCTGAGGGCCGTGAGGCGGGAGCAGT
GGGATGCTATCCTTGAGCAGGCACAGTGCCAAATCCTTCACCACAGGGGC
AATGAATGTTTCGATTCGTACGTGCTCTCTGAGAGTAGCTTATTCGTTTA
CAACCACAAGCTCGTGCTCAAGACGTGCGGCACTACCACCCTGCTCAGGC
ACAGTGCCAAATCCTTCACCACAGGGGCAATGAATGTTTCGATTCGTACG
TGCTCTCTGAGAGTAGCTTATTCGTTTACAACCACAAGCTCGTGCTCAAG
ACGTGCGGCACTACCACCCTGCTCAGGTGTCTGCCCCTGCTCACCGTGGT
GACTAAAAGCTACGGCCTTAACTTGGAGTGGATCGGGTACTCGAGGAAAG
ACTTCACTTTTCCCACGGATCAGGCGAGATTATATTGCAGTGTGTCTGCC
CCTGCTCACCGTGGTGACTAAAAGCTACGGCCTTAACTTGGAGTGGATCG
GGTACTCGAGGAAAGACTTCACTTTTCCCACGGATCAGGCGAGATTATAT
TGCAGTATCTACCCACACGCGTCGTTCGCGCAGGAAGTGGACTTCCTACA
GACTATGTTCACTGGCTCTGCCTACGTGCACGGCCCTCTGAACAGCGACC
ACTGGTACACGTATGTCGCGGACGACGGCAAGAGGCCTGACAGTGCCGTG
GCCGATCGCACCCTCAATCTCATGATGTACGACTTGGAGCCTGAGGTGGC
CCGGAATTTTTACAAGTCCGATGAGGTGCGCATCTACCCACACGCGTCGT
TCGCGCAGGAAGTGGACTTCCTACAGACTATGTTCACTGGCTCTGCCTAC
GTGCACGGCCCTCTGAACAGCGACCACTGGTACACGTATGTCGCGGACGA
CGGCAAGAGGCCTGACAGTGCCGTGGCCGATCGCACCCTCAATCTCATGA
TGTACGACTTGGAGCCTGAGGTGGCCCGGAATTTTTACAAGTCCGATGAG
GTGCGC
back to top