mRNA_H-paniculata_contig1616.3550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1616.3550.1
Unique NamemRNA_H-paniculata_contig1616.3550.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1616.3550.1 vs. uniprot
Match: D7FHU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.210e-20
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    4 GVVDGPVKVVETVEGLEPNATYEVFLTTETINSNGIYRQKMEPLMATTHPMPPAFLDARARAADASAS 207
            GV  G V  +ETVEGLEPNATYE+F+ TET NSNG+Y  K EP++ATTHP+PP  LDARA AADAS+S
Sbjct:  196 GVATGGV--LETVEGLEPNATYEIFIATETTNSNGVYHAKSEPVLATTHPVPPVLLDARAHAADASSS 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1616.3550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU9_ECTSI5.210e-2069.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1616contigH-paniculata_contig1616:3094..4259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue5.1e-17
Seed eggNOG ortholog2880.D7FHU9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs2CBYM@1,2QPWV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size211
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.7823007-CDS-H-paniculata_contig1616:3095..32301622929290.7823007-CDS-H-paniculata_contig1616:3095..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 3096..3230 -
1691480803.1433923-CDS-H-paniculata_contig1616:3095..32301691480803.1433923-CDS-H-paniculata_contig1616:3095..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 3096..3230 -
1622929290.8026514-CDS-H-paniculata_contig1616:4187..42591622929290.8026514-CDS-H-paniculata_contig1616:4187..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 4188..4259 -
1691480803.1574006-CDS-H-paniculata_contig1616:4187..42591691480803.1574006-CDS-H-paniculata_contig1616:4187..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 4188..4259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1616.3550.1prot_H-paniculata_contig1616.3550.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1616 3096..4259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1616.3550.1

>prot_H-paniculata_contig1616.3550.1 ID=prot_H-paniculata_contig1616.3550.1|Name=mRNA_H-paniculata_contig1616.3550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
TGVVDGPVKVVETVEGLEPNATYEVFLTTETINSNGIYRQKMEPLMATTH
PMPPAFLDARARAADASAS
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mRNA from alignment at H-paniculata_contig1616:3094..4259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1616.3550.1 ID=mRNA_H-paniculata_contig1616.3550.1|Name=mRNA_H-paniculata_contig1616.3550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-paniculata_contig1616:3094..4259- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGAGTTGTTGATGGCCCTGTTAAGGTCGTGGAGACTGTCGAGGGTCT
CGAGCCTAACGCTACATATGAGGTGATGTTTTCTTTCGGTGCCGGCCAAA
CGATTCCAAACTCAGCAGGTAGGATTAGGCTGTTCCGATATTCGATATTG
CACAAAGGGTAACGTAGCGAAACCTTAGAATGAATAGTATAAATTGCCGC
TGGGTGACACTTGGCGAGCAGCTGGTAGAGAGCAACTGGACATGTTGATT
AGTGACACTAAGCGGGACTCTGGTCCACTGACATGTTTCATGACAGTAGC
AATAATTCATGAATGCGCAACAACCGGGATTGTTGTGCACCCTACCTGCT
TAGTCCAGGAGTGATTGATGATACTGTGTAAACTAAATGTCGTGGTAGCA
CTATCAACTTTCACAATTCCATTATGGCTACGGGTGTAACATATGTTAAC
TAAACTGTACACCTCTGAGTGGGATGCAGGACTGCTATATTGTAATGGCC
CACTATAGTGTAGAATGTATCAGTATGTGACAATTAGCAACGACCGTTGA
GAGGTAGACCAAATGATGAAAAGGTCGTGTTGCGTCAGGTGCGTTTTCTT
TGCAAAAATAGATGAGCAGTCTTCCGCCGTTTCAAATTCTGCTCCTAAGC
TCACTGTGTTAGACGTGATTGTATGTCAACGCTTTCCCCCATAAAAGAGC
CGAACACGACCGCGTTCGATAAGTCTGACGTACATATGTGACGATCTCAT
CAATTTCGTTCCGTGTGTACTCCACCTGGAAATTCAGCTCTGGCTATTTG
TCCTTTTAGAGCCATGCGTGTCGGTCGTCCAAAAACATGTGAATATTCTT
CGAACATCAATTCTTGTCGAGAATTACTTTCGTGTTTTCCAGGAATGTTG
TGTTCCGAAACCTTCATTTTCGTTTATTCTTGAAAGGGTGAGGTCATTTA
AGAATCCCTCTAGAACCGATATGTTTTGCGCGAAATTGTACCTCCTCAGA
TCGCCACCTCTATGCCGTGCCTTGCCCAGGTTTTTCTAACTACGGAAACA
ATAAACTCTAATGGAATCTACCGCCAGAAAATGGAGCCACTGATGGCCAC
CACGCACCCGATGCCACCCGCGTTCCTAGATGCTCGAGCTCGCGCCGCCG
ATGCATCTGCCTCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1616:3094..4259-

>mRNA_H-paniculata_contig1616.3550.1 ID=mRNA_H-paniculata_contig1616.3550.1|Name=mRNA_H-paniculata_contig1616.3550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig1616:3094..4259- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGAGTTGTTGATGGCCCTGTTAAGGTCGTGGAGACTGTCGAGGGTCT
CGAGCCTAACGCTACATATGAGACGGGAGTTGTTGATGGCCCTGTTAAGG
TCGTGGAGACTGTCGAGGGTCTCGAGCCTAACGCTACATATGAGGTTTTT
CTAACTACGGAAACAATAAACTCTAATGGAATCTACCGCCAGAAAATGGA
GCCACTGATGGCCACCACGCACCCGATGCCACCCGCGTTCCTAGATGCTC
GAGCTCGCGCCGCCGATGCATCTGCCTCCGTTTTTCTAACTACGGAAACA
ATAAACTCTAATGGAATCTACCGCCAGAAAATGGAGCCACTGATGGCCAC
CACGCACCCGATGCCACCCGCGTTCCTAGATGCTCGAGCTCGCGCCGCCG
ATGCATCTGCCTCC
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