mRNA_H-paniculata_contig16154.3546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16154.3546.1
Unique NamemRNA_H-paniculata_contig16154.3546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16154.3546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16154contigH-paniculata_contig16154:1740..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.562936-CDS-H-paniculata_contig16154:1739..21171622929290.562936-CDS-H-paniculata_contig16154:1739..2117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16154 1740..2117 +
1691480803.037649-CDS-H-paniculata_contig16154:1739..21171691480803.037649-CDS-H-paniculata_contig16154:1739..2117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16154 1740..2117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16154.3546.1prot_H-paniculata_contig16154.3546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16154 1740..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16154.3546.1

>prot_H-paniculata_contig16154.3546.1 ID=prot_H-paniculata_contig16154.3546.1|Name=mRNA_H-paniculata_contig16154.3546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
HIYWRQYDVIPDHKRKLRTSHREDKLPKYLTYSRGQEAMRTRIYDRTLAF
IRIAGSGYPGGATDSAERIGPFQKRHKNSAKEILNVESFFFGTHAISPSL
ELICSGLKSFVNFPTNRNTCMSSEK*
back to top

mRNA from alignment at H-paniculata_contig16154:1740..2117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16154.3546.1 ID=mRNA_H-paniculata_contig16154.3546.1|Name=mRNA_H-paniculata_contig16154.3546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig16154:1740..2117+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATATATTGGCGACAATATGACGTTATTCCAGACCATAAAAGGAAGCT
GCGCACGTCGCACAGAGAAGACAAACTACCCAAGTACCTGACCTACTCTC
GGGGGCAAGAGGCTATGCGTACGAGAATATATGACCGGACGTTAGCGTTC
ATAAGAATCGCAGGCTCAGGTTATCCAGGGGGTGCCACCGACAGTGCCGA
GCGAATTGGTCCGTTCCAAAAACGACATAAAAATAGCGCAAAAGAAATAT
TGAATGTTGAGTCTTTTTTTTTCGGCACACACGCCATTTCGCCTTCGCTT
GAGCTAATCTGTTCGGGGCTAAAGTCGTTCGTCAATTTTCCTACAAATAG
GAACACTTGCATGAGCTCGGAGAAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16154:1740..2117+

>mRNA_H-paniculata_contig16154.3546.1 ID=mRNA_H-paniculata_contig16154.3546.1|Name=mRNA_H-paniculata_contig16154.3546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig16154:1740..2117+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATATATTGGCGACAATATGACGTTATTCCAGACCATAAAAGGAAGCT
GCGCACGTCGCACAGAGAAGACAAACTACCCAAGTACCTGACCTACTCTC
GGGGGCAAGAGGCTATGCGTACGAGAATATATGACCGGACGTTAGCGTTC
ATAAGAATCGCAGGCTCAGGTTATCCAGGGGGTGCCACCGACAGTGCCGA
GCGAATTGGTCCGTTCCAAAAACGACATAAAAATAGCGCAAAAGAAATAT
TGAATGTTGAGTCTTTTTTTTTCGGCACACACGCCATTTCGCCTTCGCTT
GAGCTAATCTGTTCGGGGCTAAAGTCGTTCGTCAATTTTCCTACAAATAG
GAACACTTGCATGAGCTCGGAGAAATAACACATATATTGGCGACAATATG
ACGTTATTCCAGACCATAAAAGGAAGCTGCGCACGTCGCACAGAGAAGAC
AAACTACCCAAGTACCTGACCTACTCTCGGGGGCAAGAGGCTATGCGTAC
GAGAATATATGACCGGACGTTAGCGTTCATAAGAATCGCAGGCTCAGGTT
ATCCAGGGGGTGCCACCGACAGTGCCGAGCGAATTGGTCCGTTCCAAAAA
CGACATAAAAATAGCGCAAAAGAAATATTGAATGTTGAGTCTTTTTTTTT
CGGCACACACGCCATTTCGCCTTCGCTTGAGCTAATCTGTTCGGGGCTAA
AGTCGTTCGTCAATTTTCCTACAAATAGGAACACTTGCATGAGCTCGGAG
AAATAA
back to top