mRNA_H-paniculata_contig16108.3531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16108.3531.1
Unique NamemRNA_H-paniculata_contig16108.3531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16108.3531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16108contigH-paniculata_contig16108:1299..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16108.3531.1prot_H-paniculata_contig16108.3531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16108 1411..1740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929288.488112-UTR-H-paniculata_contig16108:1298..14101622929288.488112-UTR-H-paniculata_contig16108:1298..1410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16108 1299..1410 +
1691480802.0372887-UTR-H-paniculata_contig16108:1298..14101691480802.0372887-UTR-H-paniculata_contig16108:1298..1410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16108 1299..1410 +
1622929288.512092-UTR-H-paniculata_contig16108:1740..17521622929288.512092-UTR-H-paniculata_contig16108:1740..1752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16108 1741..1752 +
1691480802.0648348-UTR-H-paniculata_contig16108:1740..17521691480802.0648348-UTR-H-paniculata_contig16108:1740..1752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16108 1741..1752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929288.5001261-CDS-H-paniculata_contig16108:1410..17401622929288.5001261-CDS-H-paniculata_contig16108:1410..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16108 1411..1740 +
1691480802.0478864-CDS-H-paniculata_contig16108:1410..17401691480802.0478864-CDS-H-paniculata_contig16108:1410..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16108 1411..1740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16108.3531.1

>prot_H-paniculata_contig16108.3531.1 ID=prot_H-paniculata_contig16108.3531.1|Name=mRNA_H-paniculata_contig16108.3531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MYSVGDDDEISFSSVSRAYTYFRCCTFATFRCTVIYSGMRRTRVFCLFVQ
LTLKTAGSNTICDTDPRDAPCNHIIMLQYQLELASSNYNNFTSLLACLLV
SCGKSTTRS*
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mRNA from alignment at H-paniculata_contig16108:1299..1752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16108.3531.1 ID=mRNA_H-paniculata_contig16108.3531.1|Name=mRNA_H-paniculata_contig16108.3531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at H-paniculata_contig16108:1299..1752+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGTAAACCACAACACCCATTGATCGAATTAATCTTTGCTCATCGTCG
ATAAAAAAAAATTATTCTCCCGAGGAGGAACACGGCAAAACTACGGCTCC
CTCTCTTTCGCCATGTACTCTGTCGGTGATGACGATGAGATCTCATTTTC
TAGTGTATCGCGTGCTTATACTTACTTTAGATGTTGCACATTCGCCACAT
TTCGTTGCACGGTTATTTATTCCGGAATGCGCAGAACGCGCGTTTTTTGT
TTGTTTGTTCAACTGACGCTCAAAACGGCAGGATCCAACACTATTTGTGA
CACTGACCCACGCGACGCCCCATGCAACCACATAATCATGTTACAATACC
AACTAGAACTTGCCTCGTCAAACTACAACAATTTCACTTCACTCCTTGCT
TGCTTGCTTGTTTCTTGTGGAAAGTCAACCACACGCAGTTAAACACGTCT
ACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16108:1299..1752+

>mRNA_H-paniculata_contig16108.3531.1 ID=mRNA_H-paniculata_contig16108.3531.1|Name=mRNA_H-paniculata_contig16108.3531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16108:1299..1752+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCTGTCGGTGATGACGATGAGATCTCATTTTCTAGTGTATCGCG
TGCTTATACTTACTTTAGATGTTGCACATTCGCCACATTTCGTTGCACGG
TTATTTATTCCGGAATGCGCAGAACGCGCGTTTTTTGTTTGTTTGTTCAA
CTGACGCTCAAAACGGCAGGATCCAACACTATTTGTGACACTGACCCACG
CGACGCCCCATGCAACCACATAATCATGTTACAATACCAACTAGAACTTG
CCTCGTCAAACTACAACAATTTCACTTCACTCCTTGCTTGCTTGCTTGTT
TCTTGTGGAAAGTCAACCACACGCAGTTAAATGTACTCTGTCGGTGATGA
CGATGAGATCTCATTTTCTAGTGTATCGCGTGCTTATACTTACTTTAGAT
GTTGCACATTCGCCACATTTCGTTGCACGGTTATTTATTCCGGAATGCGC
AGAACGCGCGTTTTTTGTTTGTTTGTTCAACTGACGCTCAAAACGGCAGG
ATCCAACACTATTTGTGACACTGACCCACGCGACGCCCCATGCAACCACA
TAATCATGTTACAATACCAACTAGAACTTGCCTCGTCAAACTACAACAAT
TTCACTTCACTCCTTGCTTGCTTGCTTGTTTCTTGTGGAAAGTCAACCAC
ACGCAGTTAA
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