mRNA_H-paniculata_contig16105.3530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16105.3530.1
Unique NamemRNA_H-paniculata_contig16105.3530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16105.3530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16105contigH-paniculata_contig16105:5486..5815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929288.4599674-CDS-H-paniculata_contig16105:5485..58151622929288.4599674-CDS-H-paniculata_contig16105:5485..5815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16105 5486..5815 +
1691480802.0199444-CDS-H-paniculata_contig16105:5485..58151691480802.0199444-CDS-H-paniculata_contig16105:5485..5815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16105 5486..5815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16105.3530.1prot_H-paniculata_contig16105.3530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16105 5486..5815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16105.3530.1

>prot_H-paniculata_contig16105.3530.1 ID=prot_H-paniculata_contig16105.3530.1|Name=mRNA_H-paniculata_contig16105.3530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MAHPAWLCLVESITNNTVLAKVSLTQSPSEAWEALLNRFAPMAHGQKSSW
LKQFNQTVMEKDEDPIRVFARVDAVVNSLATLGFHKDEGEVTQKIVDSLT
SDYQLKVRTL
back to top

mRNA from alignment at H-paniculata_contig16105:5486..5815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16105.3530.1 ID=mRNA_H-paniculata_contig16105.3530.1|Name=mRNA_H-paniculata_contig16105.3530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig16105:5486..5815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACACCCTGCGTGGTTATGCCTGGTGGAGAGTATCACCAATAATAC
GGTACTCGCAAAAGTTTCCTTGACCCAGTCGCCGAGTGAAGCATGGGAAG
CGTTACTGAATCGGTTCGCGCCGATGGCGCACGGACAGAAAAGCAGTTGG
CTCAAGCAATTTAATCAAACAGTAATGGAAAAGGACGAAGACCCTATCAG
AGTTTTTGCTAGGGTAGATGCAGTTGTGAATTCCCTGGCAACCCTGGGTT
TCCACAAGGATGAGGGTGAAGTCACCCAAAAGATTGTTGATAGCCTAACT
TCTGACTATCAACTGAAAGTCCGCACCCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16105:5486..5815+

>mRNA_H-paniculata_contig16105.3530.1 ID=mRNA_H-paniculata_contig16105.3530.1|Name=mRNA_H-paniculata_contig16105.3530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16105:5486..5815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACACCCTGCGTGGTTATGCCTGGTGGAGAGTATCACCAATAATAC
GGTACTCGCAAAAGTTTCCTTGACCCAGTCGCCGAGTGAAGCATGGGAAG
CGTTACTGAATCGGTTCGCGCCGATGGCGCACGGACAGAAAAGCAGTTGG
CTCAAGCAATTTAATCAAACAGTAATGGAAAAGGACGAAGACCCTATCAG
AGTTTTTGCTAGGGTAGATGCAGTTGTGAATTCCCTGGCAACCCTGGGTT
TCCACAAGGATGAGGGTGAAGTCACCCAAAAGATTGTTGATAGCCTAACT
TCTGACTATCAACTGAAAGTCCGCACCCTCATGGCACACCCTGCGTGGTT
ATGCCTGGTGGAGAGTATCACCAATAATACGGTACTCGCAAAAGTTTCCT
TGACCCAGTCGCCGAGTGAAGCATGGGAAGCGTTACTGAATCGGTTCGCG
CCGATGGCGCACGGACAGAAAAGCAGTTGGCTCAAGCAATTTAATCAAAC
AGTAATGGAAAAGGACGAAGACCCTATCAGAGTTTTTGCTAGGGTAGATG
CAGTTGTGAATTCCCTGGCAACCCTGGGTTTCCACAAGGATGAGGGTGAA
GTCACCCAAAAGATTGTTGATAGCCTAACTTCTGACTATCAACTGAAAGT
CCGCACCCTC
back to top