mRNA_H-paniculata_contig16094.3526.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16094.3526.1
Unique NamemRNA_H-paniculata_contig16094.3526.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16094.3526.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.530e-31
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = 1 
Query:  136 GLSLGMMSIRVLSYSMLGYGLFYLAMCLGKWYSSNVFNSREDNFEYTID-RDVEI---GDLY-----NQIVVFAMLPVVLSAALGGVYECLWKKRDDER------SGNDGTQHSTLRSWLDSWHNVVHYKFKALAQYSPWLSVGEVTVLSLWLFGMAAQLWQSV 582
            G+   + +IRV SY MLGY LFYLAM +GKWY   +     D  E  +D  D ++    DLY         +F  LP++L+AALGGVYE LWK+R+         S   G +  +    L  +H+VVHY+++ L QYSPWL+VGE TVL+LWL  M +Q WQ V
Sbjct:    6 GIRCALTAIRVASYGMLGYCLFYLAMFIGKWYEGTILPG--DELELVLDSEDADLDGSADLYIKHSDTSKFIFIGLPIILTAALGGVYEALWKRREIRSTQEHPDSAAAGEEEDSKPGILAFFHSVVHYQYRPLGQYSPWLTVGETTVLTLWLLAMGSQCWQGV 167
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BLAST of mRNA_H-paniculata_contig16094.3526.1 vs. uniprot
Match: D7FK19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK19_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.950e-21
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:  163 RVLSYSMLGYGLFYLAMCLGKWYSSNVFNSREDNFEYT--------IDRDVEIGDLYNQIVVFAMLPVVLSAALGGVYECLWKKRDDERSGNDGTQHSTLRSWLDSWHNVVHYKFKAL-AQYSPWLSVGEVTVLSLWLFGMAAQLWQSV 582
            R  SY +LGY LF+LAM  GKWY  + F   +D  ++          D +++I     Q+ +F   P++L+AALGGVYE LW  R  E    D  + S    +L + H+++H +F+ L + Y PWL+VGE   + LW+  M ++L Q V
Sbjct:   14 RTFSYLLLGYALFHLAMHFGKWYGEH-FEDTDDGLQHLEFVMQGEGTDDELKIRTSRGQLFLFLASPIILAAALGGVYEALWLSR--EAKAGDAAEASKAGGFLATIHSIMHCQFRPLGSSYFPWLTVGEAAAMFLWICVMVSELTQGV 159
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BLAST of mRNA_H-paniculata_contig16094.3526.1 vs. uniprot
Match: A0A6H5KG64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG64_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-15
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  163 RVLSYSMLGYGLFYLAMCLGKWYSSNVFNSREDNFEYT--------IDRDVEIGDLYNQIVVFAMLPVVLSAALGGVYECLWKKRDDERSGNDGTQHSTLRSWLDSWHNVVHYKFKAL-AQYSP 507
            R  SY +LGY LF+LAM  GKWY  N F   +D  ++          D +++I     Q+ +F   P++L+AALGGVYE LW  R  E    D  + S    +L + H+++H +F+ L + Y P
Sbjct:   14 RTFSYLLLGYALFHLAMHFGKWYGEN-FEDTDDGLQHLEFVMQGEGTDDELKIRTSRGQLFLFLASPIILAAALGGVYEALWLSR--EAKAGDAAEASKAGGFLATVHSIMHCQFRPLGSSYFP 134
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BLAST of mRNA_H-paniculata_contig16094.3526.1 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 9.870e-15
Identity = 40/123 (32.52%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:  145 LGMMSIRVLSYSMLGYGLFYLAMCLGKWYSSNVFNSREDNFEYTIDRDVEIGDLYNQIVVFAMLPVVLSAALGGVYECLWKKRDDE--RSGNDGTQHSTLRSWLDSWHNVVHYKFKALAQYSP 507
            + ++S+R L+ ++L Y +FYLAM  G WY  + F +  D  +Y I     +    NQ  +F +L  V++AALGG+Y+ +WK R+ +  + G   +  S ++S+L ++++++H++F+ L + SP
Sbjct:   23 VALVSLRFLASAVLLYSVFYLAMARGTWYREHFFVN--DELDYDISSGANMSTSQNQRALFLLLLPVVAAALGGIYQAVWKYREGKATQDGLPASSSSKVQSFLKAYNSIIHFQFRPLGKLSP 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16094.3526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5Y8_ECTSI3.530e-3143.90Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FK19_ECTSI8.950e-2136.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG64_9PHAE2.000e-1536.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNK5_ECTSI9.870e-1532.52Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16094contigH-paniculata_contig16094:3593..4512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.1e-26
Seed eggNOG ortholog2880.D7G5M5
Preferred nameAIM14
KEGG koko:K00521
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016175,GO:0016491,GO:0016651,GO:0016722,GO:0019725,GO:0030003,GO:0031090,GO:0031224,GO:0032956,GO:0032970,GO:0033043,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0048878,GO:0050664,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051493,GO:0055065,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0097038,GO:0098588,GO:0098771,GO:0098805,GO:0098852
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size587
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16094.3526.1prot_H-paniculata_contig16094.3526.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16094 3704..4512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929287.0819376-UTR-H-paniculata_contig16094:3592..37031622929287.0819376-UTR-H-paniculata_contig16094:3592..3703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16094 3593..3703 +
1691480801.5073645-UTR-H-paniculata_contig16094:3592..37031691480801.5073645-UTR-H-paniculata_contig16094:3592..3703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16094 3593..3703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929287.09401-CDS-H-paniculata_contig16094:3703..40981622929287.09401-CDS-H-paniculata_contig16094:3703..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16094 3704..4098 +
1691480801.5168753-CDS-H-paniculata_contig16094:3703..40981691480801.5168753-CDS-H-paniculata_contig16094:3703..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16094 3704..4098 +
1622929287.1040742-CDS-H-paniculata_contig16094:4433..45121622929287.1040742-CDS-H-paniculata_contig16094:4433..4512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16094 4434..4512 +
1691480801.5245473-CDS-H-paniculata_contig16094:4433..45121691480801.5245473-CDS-H-paniculata_contig16094:4433..4512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16094 4434..4512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16094.3526.1

>prot_H-paniculata_contig16094.3526.1 ID=prot_H-paniculata_contig16094.3526.1|Name=mRNA_H-paniculata_contig16094.3526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MEQSTYVRGLSLGMMSIRVLSYSMLGYGLFYLAMCLGKWYSSNVFNSRED
NFEYTIDRDVEIGDLYNQIVVFAMLPVVLSAALGGVYECLWKKRDDERSG
NDGTQHSTLRSWLDSWHNVVHYKFKALAQYSPWLSVGEVTVLSLWLFGMA
AQLWQSVH
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mRNA from alignment at H-paniculata_contig16094:3593..4512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16094.3526.1 ID=mRNA_H-paniculata_contig16094.3526.1|Name=mRNA_H-paniculata_contig16094.3526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at H-paniculata_contig16094:3593..4512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCGGCTATCCTCCAGACCAGCGGGGATCATTCCGGTTATTATTGCGC
ATTAGTATATCCGTAAACACACTTCGTGTTCTGTTCTTGCGTACACACAT
CTTGCGTGCACATGGAGCAATCAACATACGTACGCGGCCTTAGCCTGGGT
ATGATGAGCATCCGAGTGTTATCATACTCGATGCTGGGCTACGGGTTATT
CTATTTGGCTATGTGCCTGGGCAAGTGGTACTCCAGCAATGTGTTCAACT
CCAGAGAGGACAACTTCGAGTACACAATTGATCGTGATGTAGAGATTGGA
GACTTGTACAACCAGATCGTGGTTTTCGCGATGCTGCCAGTAGTGCTAAG
TGCCGCCTTGGGCGGCGTGTACGAGTGCCTCTGGAAGAAGAGAGACGATG
AGCGAAGCGGCAATGACGGCACCCAGCATTCGACGCTACGATCTTGGCTC
GATTCGTGGCATAATGTCGTCCACTACAAGTTCAAGGCCTTGGCGCAATA
TTCTCCGTGAGTGCAGTTGTGTTCGTTTTTCGTCTGTGAAGTACGATCTT
GTCGTGGGTCAAACCATATAACAACAGGCGTGTTACTTCAAGAGTAGTCG
ACATCATATTTCGGACCTTCACCACGACTAGGTGAAGCCTCCGGGCTTTC
TTTCTTAAACTGCTGCAACTTCCTGTCTATAACTACCTCTTTCATGACAT
CTCGGGAGCTCTCCTGATGCATCATGGCTCACCTCTCGTTCACTATTACG
AGTAGTCTCTGACGCTCAACCGAGTAAAACACAATTGATCTCATGGTCGA
GTTGGTATCTTTTTCTCGCCCACGATAATATGAAACGGCAGGTGGCTCTC
TGTCGGAGAGGTGACGGTGCTTAGTCTGTGGCTTTTTGGCATGGCAGCAC
AGCTCTGGCAAAGTGTCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16094:3593..4512+

>mRNA_H-paniculata_contig16094.3526.1 ID=mRNA_H-paniculata_contig16094.3526.1|Name=mRNA_H-paniculata_contig16094.3526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig16094:3593..4512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCAATCAACATACGTACGCGGCCTTAGCCTGGGTATGATGAGCAT
CCGAGTGTTATCATACTCGATGCTGGGCTACGGGTTATTCTATTTGGCTA
TGTGCCTGGGCAAGTGGTACTCCAGCAATGTGTTCAACTCCAGAGAGGAC
AACTTCGAGTACACAATTGATCGTGATGTAGAGATTGGAGACTTGTACAA
CCAGATCGTGGTTTTCGCGATGCTGCCAGTAGTGCTAAGTGCCGCCTTGG
GCGGCGTGTACGAGTGCCTCTGGAAGAAGAGAGACGATGAGCGAAGCGGC
AATGACGGCACCCAGCATTCGACGCTACGATCTTGGCTCGATTCGTGGCA
TAATGTCGTCCACTACAAGTTCAAGGCCTTGGCGCAATATTCTCCATGGA
GCAATCAACATACGTACGCGGCCTTAGCCTGGGTATGATGAGCATCCGAG
TGTTATCATACTCGATGCTGGGCTACGGGTTATTCTATTTGGCTATGTGC
CTGGGCAAGTGGTACTCCAGCAATGTGTTCAACTCCAGAGAGGACAACTT
CGAGTACACAATTGATCGTGATGTAGAGATTGGAGACTTGTACAACCAGA
TCGTGGTTTTCGCGATGCTGCCAGTAGTGCTAAGTGCCGCCTTGGGCGGC
GTGTACGAGTGCCTCTGGAAGAAGAGAGACGATGAGCGAAGCGGCAATGA
CGGCACCCAGCATTCGACGCTACGATCTTGGCTCGATTCGTGGCATAATG
TCGTCCACTACAAGTTCAAGGCCTTGGCGCAATATTCTCCGTGGCTCTCT
GTCGGAGAGGTGACGGTGCTTAGTCTGTGGCTTTTTGGCATGGCAGCACA
GCTCTGGCAAAGTGTCCACGTGGCTCTCTGTCGGAGAGGTGACGGTGCTT
AGTCTGTGGCTTTTTGGCATGGCAGCACAGCTCTGGCAAAGTGTCCAC
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