mRNA_H-paniculata_contig16078.3521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: W4FZ63_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZ63_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 9.650e-11 Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 16 SAHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQHQGE-FQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDV 297
S+ +Y V++++TG + EAHV R++ YAD SL V +D + A H E +++ I+D KK +Y VL++W GL E SWEP A I EDV
Sbjct: 80 SSWLYDVKNLITGDEREAHVSRLKFYADKSLHVSEDFKEHVA---HNSEGYEVEAIVDARYVAAKK-DYEVLLKWRGLNDVENSWEPAATIKEDV 170
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.170e-9 Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 1 IVTAGSAHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDVP 300
+ A S ++ +E+++TG + E H R++ YAD+SL V +DL H E + D L ++ + + V W GL E SWEP AV+ +DVP
Sbjct: 352 VTAATSNWIFEIENLITGERREVHASRLKFYADSSLEVTEDL---LRHVAHNSEGHVVDSLLAARYNAQEKRHELKVHWRGLAEAEDSWEPAAVLLQDVP 448
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: A0A0G4IUJ7_PLABS (Chromo domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUJ7_PLABS) HSP 1 Score: 57.4 bits (137), Expect = 8.100e-8 Identity = 33/92 (35.87%), Postives = 51/92 (55.43%), Query Frame = 1
Query: 25 VYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDVP 300
VY +ED++T + +AH R+R YADA L + +++ Q F + D+LD + + + E + V W G E +WEP A+I EDVP
Sbjct: 72 VYELEDLLTARRFQAHTQRIRRYADADLNITTEIKQHLERLDQQ--FHVDDLLDCRIDRETQ-ELQIKVAWSGFDPSEATWEPAALIAEDVP 160
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: W2KEB9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KEB9_PHYPR) HSP 1 Score: 54.3 bits (129), Expect = 2.420e-6 Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 19 AHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDL------QVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDV 297
AH + +E ++TGAK + HV R++ YADASL V ++L QV+ + + + D+++ +Y VLV+W GL E S+EP+ + DV
Sbjct: 625 AHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYEPLTSLARDV 714
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: V9EDH7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9EDH7_PHYPR) HSP 1 Score: 54.3 bits (129), Expect = 2.440e-6 Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 19 AHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDL------QVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDV 297
AH + +E ++TGAK + HV R++ YADASL V ++L QV+ + + + D+++ +Y VLV+W GL E S+EP+ + DV
Sbjct: 853 AHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYEPLTSLARDV 942
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: A0A6A3DMZ5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DMZ5_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 4 VTAGSAHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDVP 300
V + +A+ + +E ++TGA H R++ YAD+SL V ++ ++ A + +P Y VL W GL E SWEP+ ++HEDVP
Sbjct: 35 VISANANSFEIEHLLTGAIRTVHASRLKRYADSSLDVNEE--ILEHVANQDVYLTVEAFKHHRTHPTHF--YEVLTGWEGLEDIEDSWEPIKIMHEDVP 129
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: A0A6A4B0A2_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B0A2_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.020e-5 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 4 VTAGSAHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDVP 300
V + +A+ + +E ++TGA H R++ YAD+SL V ++ ++ A + +P Y VL W GL E SWEP+ ++HEDVP
Sbjct: 274 VISANANSFEIERLLTGAIRTVHASRLKRYADSSLDVNEE--ILEHVANQDVYLTVEAFKQHRTHPTHF--YEVLTGWEGLEDIEDSWEPIKIMHEDVP 368
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Match: A0A6G0X0V9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0V9_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.060e-5 Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 1 IVTAGSAHVYTVEDIVTGAKEEAH-VVRMRPYADASLVVGKDLQVVFAAAQHQGEFQIADILDIGENPDKKGEYVVLVEWVGLGGEERSWEPMAVIHEDVP 300
IV S V+ V+D+V + H RM+ Y D+SL V ++ ++ A QG + + + +G + V V+W+GL E SWEP+ +IHEDVP
Sbjct: 1144 IVNVISDWVFEVQDLVEPFEISTHHASRMQFYCDSSLNVTEE--ILDHARYTQGGHMVRGSAGLRKG---RGGFEVCVQWLGLEDTEASWEPLDIIHEDVP 1239 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16078.3521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16078.3521.1 >prot_H-paniculata_contig16078.3521.1 ID=prot_H-paniculata_contig16078.3521.1|Name=mRNA_H-paniculata_contig16078.3521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp IVTAGSAHVYTVEDIVTGAKEEAHVVRMRPYADASLVVGKDLQVVFAAAQback to top mRNA from alignment at H-paniculata_contig16078:5662..5961- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16078.3521.1 ID=mRNA_H-paniculata_contig16078.3521.1|Name=mRNA_H-paniculata_contig16078.3521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig16078:5662..5961- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16078:5662..5961- >mRNA_H-paniculata_contig16078.3521.1 ID=mRNA_H-paniculata_contig16078.3521.1|Name=mRNA_H-paniculata_contig16078.3521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig16078:5662..5961- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |