mRNA_H-paniculata_contig16058.3510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16058.3510.1
Unique NamemRNA_H-paniculata_contig16058.3510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16058.3510.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-5
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 2 
Query:    2 YPFLVELMKLVQERQWFPKREGHVNVTCRRMVPVELKILASSQIWGKG 145
            YPF VEL+ LV++R WFP   G  + + RR +PV+LK+LA  QI  +G
Sbjct:  124 YPFFVELVALVKQRDWFPT--GKQDASGRRGIPVQLKVLACLQILARG 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16058.3510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.460e-550.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16058contigH-paniculata_contig16058:3890..5466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.6810434-CDS-H-paniculata_contig16058:3889..39781622929283.6810434-CDS-H-paniculata_contig16058:3889..3978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16058 3890..3978 -
1691480800.5965245-CDS-H-paniculata_contig16058:3889..39781691480800.5965245-CDS-H-paniculata_contig16058:3889..3978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16058 3890..3978 -
1622929283.6956537-CDS-H-paniculata_contig16058:5354..54661622929283.6956537-CDS-H-paniculata_contig16058:5354..5466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16058 5355..5466 -
1691480800.6053948-CDS-H-paniculata_contig16058:5354..54661691480800.6053948-CDS-H-paniculata_contig16058:5354..5466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16058 5355..5466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16058.3510.1prot_H-paniculata_contig16058.3510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16058 3890..5466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16058.3510.1

>prot_H-paniculata_contig16058.3510.1 ID=prot_H-paniculata_contig16058.3510.1|Name=mRNA_H-paniculata_contig16058.3510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
LSFPRGADEVGARTTMVSEERGARKCHLSPNGSCRAEDSGELADLGKGNS
FDDIGQFSLMSESTAQS
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mRNA from alignment at H-paniculata_contig16058:3890..5466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16058.3510.1 ID=mRNA_H-paniculata_contig16058.3510.1|Name=mRNA_H-paniculata_contig16058.3510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1577bp|location=Sequence derived from alignment at H-paniculata_contig16058:3890..5466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCCTTTCCTCGTGGAGCTGATGAAGTTGGTGCAAGAACGACAATGGT
TTCCGAAGAGAGAGGGGCACGTAAATGTCACCTGTCGCCGAATGGTTCCT
GTAGAGCTGAAGGTAAGCAGCACGACAACACGCGATGTCGCAACCAGCGT
GGCACGCTTGCTGTGCTTGATCATTCGCCTGGATAGGTTATGCTTTGTGT
TGTGCGTGGCAGCCAAATTCCCTCAGCTTGCTTTTGTATTGAAATGCTGT
CTTACTCTTGGTGTCTTCCACCATACAGTGCTGCCTCAGTTGTGCTTTAC
TGTACAGACGGTAAGATCTGTGTCTGTCACTGTGCATGACAGAAGTCATC
CTCTTCTCTACAGTTCAGTAGAATTGTGATGATGCGAATCTAAATTATAA
TGTACATTACTGTAGTGTCTGGCCTCATTCATGTGCAGTACAGCTTTACT
GTACAGACGGTAAGATCTGTGTCTGTCACTGTGCATGACAGAAGTCATCC
TCTTCTCCACAGTTCAGTAGAATTGTGATGATGCGAATCTAAATTATAAT
GTACATTACTGTAGTGTCTGGCCTCATTCATGTGCAGTACAAATCGTACT
GTCCTCGAACATACCGTGGCACAGGAAGTATGGCCCTGCGAAGCTGTAAT
ACATTGAATAATATGGCGGTGCTGACTAATAAAAATAATGTTGTTTGCAA
CGAGAATTTTCTCATCCAAGGGTGCCGAATCAGCCAGGGTGCGGGGGATA
CAAATTGACGCATTTCACCGTCTCGACAACATGCCGTTGGAAAATTCCAA
ACTCGGCACCATTCAGTTATCCGACAAGTTTAAGGTCACCCGTTAAAAAA
ATGTGGTATTTGTTAGTGCCCATTGTAAATACCGTATTGTCCCTTCTTTC
CTGTTGGCAAGGTGTGCTGCGCACACCTGAGGAGAATCGTTGTTTCGTCA
TTTGTTTTGCTGGGCAAAGAATATCCAGACCATCCAACGAACGCGGTGAG
CTTGTACCAAAGCATGACGTGCGATGCAAAATTCAGGATCTCCTTAACCG
TTTGTATTCGATTTTGCTATGGGTGCGTCTGATACTTCTGTTTGTTTATT
GGTAAGTTCGATGGGTTACGCTGTTCAATTTCCCTATTGTTGTCCTTCTC
TGACGAGGTTACATTGTCAGAGAGTGACAATGGAATTATGCACACTAGTC
ACACATCTCGAAAGAAAATGCCAGAATGCCACCTGCGGTGGATTCTCTTC
CGTAGGGGTGTCTTAGGCCCATTGCAACAGTGCCACCTTGCGTTGCTGAG
GTCGATTGATATTCGATAAGCCGAGGTGCGTCGTTGCAAGTATTTTTTTT
TAGCGAGGCCGTCGCACTCGGAACACGAGCGTCATCAATCAATTTTCTCC
TTGATAATATTCGATATCCCAGCCGCCCTCAGTACGGCCAATTGTTTTAT
ATGATTCCGTTACCCCTTCCGTCGCGGCTGTATCACAGATTCTGGCGAGC
TCGCAGATCTGGGGAAAGGGAATAGCTTCGATGATATCGGCCAGTTCTCC
TTGATGAGCGAGTCGACTGCCCAAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig16058:3890..5466-

>mRNA_H-paniculata_contig16058.3510.1 ID=mRNA_H-paniculata_contig16058.3510.1|Name=mRNA_H-paniculata_contig16058.3510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig16058:3890..5466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCCTTTCCTCGTGGAGCTGATGAAGTTGGTGCAAGAACGACAATGGT
TTCCGAAGAGAGAGGGGCACGTAAATGTCACCTGTCGCCGAATGGTTCCT
GTAGAGCTGAAGCTATCCTTTCCTCGTGGAGCTGATGAAGTTGGTGCAAG
AACGACAATGGTTTCCGAAGAGAGAGGGGCACGTAAATGTCACCTGTCGC
CGAATGGTTCCTGTAGAGCTGAAGATTCTGGCGAGCTCGCAGATCTGGGG
AAAGGGAATAGCTTCGATGATATCGGCCAGTTCTCCTTGATGAGCGAGTC
GACTGCCCAAAGTATTCTGGCGAGCTCGCAGATCTGGGGAAAGGGAATAG
CTTCGATGATATCGGCCAGTTCTCCTTGATGAGCGAGTCGACTGCCCAAA
GT
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