mRNA_H-paniculata_contig1604.3504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1604.3504.1
Unique NamemRNA_H-paniculata_contig1604.3504.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1604.3504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1604contigH-paniculata_contig1604:12115..13054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size428
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1604.3504.1prot_H-paniculata_contig1604.3504.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1604 12122..13053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.2144103-UTR-H-paniculata_contig1604:12114..121211622929283.2144103-UTR-H-paniculata_contig1604:12114..12121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1604 12115..12121 +
1691480800.3818269-UTR-H-paniculata_contig1604:12114..121211691480800.3818269-UTR-H-paniculata_contig1604:12114..12121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1604 12115..12121 +
1622929283.2599783-UTR-H-paniculata_contig1604:13053..130541622929283.2599783-UTR-H-paniculata_contig1604:13053..13054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1604 13054..13054 +
1691480800.4131997-UTR-H-paniculata_contig1604:13053..130541691480800.4131997-UTR-H-paniculata_contig1604:13053..13054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1604 13054..13054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.2310386-CDS-H-paniculata_contig1604:12121..124011622929283.2310386-CDS-H-paniculata_contig1604:12121..12401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 12122..12401 +
1691480800.3896399-CDS-H-paniculata_contig1604:12121..124011691480800.3896399-CDS-H-paniculata_contig1604:12121..12401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 12122..12401 +
1622929283.2450025-CDS-H-paniculata_contig1604:12913..130531622929283.2450025-CDS-H-paniculata_contig1604:12913..13053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 12914..13053 +
1691480800.397631-CDS-H-paniculata_contig1604:12913..130531691480800.397631-CDS-H-paniculata_contig1604:12913..13053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 12914..13053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1604.3504.1

>prot_H-paniculata_contig1604.3504.1 ID=prot_H-paniculata_contig1604.3504.1|Name=mRNA_H-paniculata_contig1604.3504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MEKRNGPRTSPAWRHFSKYSIPKSHGNDVCSNVRDDDGKPCNQDMKHTSK
DGTYMVKDLHSSHPAIARDVLAASRYSRETKEKKGVALGRHDAMSVTPGK
RDICGIIISVSLTPELRNRLNRKTVIWTIIDQPSAGSHR*
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mRNA from alignment at H-paniculata_contig1604:12115..13054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1604.3504.1 ID=mRNA_H-paniculata_contig1604.3504.1|Name=mRNA_H-paniculata_contig1604.3504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=940bp|location=Sequence derived from alignment at H-paniculata_contig1604:12115..13054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGACATGGAAAAGAGGAATGGCCCGAGGACGTCGCCTGCATGGCGCC
ACTTCAGCAAGTACAGCATCCCGAAGAGCCACGGCAACGACGTCTGCAGC
AATGTGCGTGATGATGACGGGAAACCATGTAATCAGGACATGAAGCACAC
TTCGAAAGATGGCACGTACATGGTGAAGGATTTACACAGTTCCCACCCGG
CGATAGCGAGGGACGTCCTAGCGGCGAGCAGATACTCCAGGGAAACCAAA
GAGAAGAAGGGCGTCGCGCTCGGTCGACACGACGCAAGTGTGTTATTCGT
AGATGTTTTATTTGTTTCGACTTCGTGCCTCTCTTGTCATCATGCAGTAC
AGTAGTGGCTGTAAGGTGTGGTCGTGATCGTTTTTTGTGTTTTAAACTTA
AGTTCGCAGCGACTACAGACAGCTACTGTACGATACATACAGTAAACAGT
CTGTGCTGCTAATGATGTGTTCGTTTGCTCGTTGTTGGTCGTTTTTTGTG
TTTGAGTTGCTTCAGTTTTAACTTCTACTTGAAGTATGTCACTATGGACA
GTACAGACAGTAGACAGTAGACAGTAGCATTTTAGTCTTTTTTATGTGTT
TTTTTTTTGTATGTTGTACTGGGTTATGTGCCTATGCTTGTGGGATTTCT
TGTGTCCGAGTGTCATTGCACGCCGGTGCTAGTTTGTTGCTCGTACGCGT
GCATCGTTGATGAGTACGATCCATGACAGTAATATACACAATATAATAGC
CACAAAATTCATGTACGACCGTGAACCGTTTTCCCTGCCTCTTTTGCAGT
GTCCGTCACACCGGGGAAAAGGGATATTTGTGGCATTATTATATCCGTGT
CCCTCACGCCTGAACTGAGGAACCGTCTCAATCGGAAAACGGTCATCTGG
ACCATCATCGACCAGCCGTCCGCGGGTAGTCATCGATAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1604:12115..13054+

>mRNA_H-paniculata_contig1604.3504.1 ID=mRNA_H-paniculata_contig1604.3504.1|Name=mRNA_H-paniculata_contig1604.3504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig1604:12115..13054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAGAGGAATGGCCCGAGGACGTCGCCTGCATGGCGCCACTTCAG
CAAGTACAGCATCCCGAAGAGCCACGGCAACGACGTCTGCAGCAATGTGC
GTGATGATGACGGGAAACCATGTAATCAGGACATGAAGCACACTTCGAAA
GATGGCACGTACATGGTGAAGGATTTACACAGTTCCCACCCGGCGATAGC
GAGGGACGTCCTAGCGGCGAGCAGATACTCCAGGGAAACCAAAGAGAAGA
AGGGCGTCGCGCTCGGTCGACACGACGCAAATGGAAAAGAGGAATGGCCC
GAGGACGTCGCCTGCATGGCGCCACTTCAGCAAGTACAGCATCCCGAAGA
GCCACGGCAACGACGTCTGCAGCAATGTGCGTGATGATGACGGGAAACCA
TGTAATCAGGACATGAAGCACACTTCGAAAGATGGCACGTACATGGTGAA
GGATTTACACAGTTCCCACCCGGCGATAGCGAGGGACGTCCTAGCGGCGA
GCAGATACTCCAGGGAAACCAAAGAGAAGAAGGGCGTCGCGCTCGGTCGA
CACGACGCAATGTCCGTCACACCGGGGAAAAGGGATATTTGTGGCATTAT
TATATCCGTGTCCCTCACGCCTGAACTGAGGAACCGTCTCAATCGGAAAA
CGGTCATCTGGACCATCATCGACCAGCCGTCCGCGGGTAGTCATCGATAA
TGTCCGTCACACCGGGGAAAAGGGATATTTGTGGCATTATTATATCCGTG
TCCCTCACGCCTGAACTGAGGAACCGTCTCAATCGGAAAACGGTCATCTG
GACCATCATCGACCAGCCGTCCGCGGGTAGTCATCGATAA
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