mRNA_H-paniculata_contig16019.3499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16019.3499.1
Unique NamemRNA_H-paniculata_contig16019.3499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 1.320e-129
Identity = 197/234 (84.19%), Postives = 208/234 (88.89%), Query Frame = 1 
Query:  130 ATGAGTKVRVEGMAVTPLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            ATGAG+KV +EGM VTPLKDFAS+ MPAEVM YVT RGW +PT IQ+HCWPVLNAGRDV+GIAETGSGKTL FSLPAMS+IFK  K G K+ GP MLVLAPTRELALQSAEVIAEAG HC I SVCVYGGVPKR+Q+IALGGGRGGG CVQVVVATPGRLKDLVGEG CDLS V SLVLDEADRMLDLGFEQDVRDIIG CA   KRQTAMFSATWPKSIRDLAAEFL +PVKV
Sbjct:  142 ATGAGSKVHIEGMKVTPLKDFASSGMPAEVMKYVTLRGWDKPTLIQAHCWPVLNAGRDVIGIAETGSGKTLGFSLPAMSKIFKNMKAGKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQKIALGGGRGGG-CVQVVVATPGRLKDLVGEGACDLSKVTSLVLDEADRMLDLGFEQDVRDIIGYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKV 374
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA)

HSP 1 Score: 263 bits (673), Expect = 4.140e-80
Identity = 144/229 (62.88%), Postives = 165/229 (72.05%), Query Frame = 1 
Query:  151 VRVEGMAVTPLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIF--KARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            + VEGM VTPL DF  A  PA+++ YV  + + +PT IQS+CWPVL AGRD+VGIAETGSGKTLAF LP ++R+   K    G     P MLVLAPTRELA+QSAEVIA AG    ++  CVYGGVPK EQ+ AL   R        VVATPGRLKDL+ EG  DLS V  +VLDEADRMLDLGFEQDVRDIIG  A +  RQTAMFSATWP+ IR LAAEFL  PV+V
Sbjct:  190 ITVEGMDVTPLADFDGAGFPAKLLAYVLAQKFERPTPIQSYCWPVLGAGRDIVGIAETGSGKTLAFGLPGLTRVLAQKGGSGGXXGARPEMLVLAPTRELAIQSAEVIAAAGAAAGVACACVYGGVPKGEQKRALRSAR-------AVVATPGRLKDLMSEGAVDLSGVVYMVLDEADRMLDLGFEQDVRDIIGATARA--RQTAMFSATWPREIRALAAEFLREPVRV 409
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: H3G5S8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S8_PHYRM)

HSP 1 Score: 238 bits (606), Expect = 1.540e-72
Identity = 128/218 (58.72%), Postives = 156/218 (71.56%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P+  F      A+ M   + +G+ +PT IQS CWP+L +GRD++GIAETGSGKTLAFS+P M  I    +V  K  GP MLV+APTRELA+QS+ VI+EAGK C + S+C+YGGVPK  Q+ AL  G      V VVVATPGRLKDLV E  C+LS V  +VLDEADRMLD GFE+D+R IIG  +   +RQ AMFSATWP+SI+ LA EFL NPVKV
Sbjct:    3 PVLSFDDVTFEAKFMK--STKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGMIHIAAQPEVSLKHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDG------VHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRSIIG--STHPERQIAMFSATWPQSIQKLAHEFLNNPVKV 210
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A5D6YE84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE84_9STRA)

HSP 1 Score: 240 bits (613), Expect = 6.070e-72
Identity = 127/218 (58.26%), Postives = 157/218 (72.02%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P++ FA     A+ +   T  G+++PT IQS CWP+L +GRD++GIAETGSGKTLAFS+P +  I     +  K +GP MLV+APTRELA+QS+EVI +AGK C + S C+YGGVPK EQ+  L  G      V VVVATPGRLKDL+ E  CDLS V  +VLDEADRMLD GFE+D+R IIG  A   +RQ AMFSATWP+SI+ LA EFL +PVKV
Sbjct:  156 PIRSFADVTFDAKFLK--TTAGFSKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPALSPKFSGPRMLVVAPTRELAMQSSEVITQAGKQCGLRSTCIYGGVPKHEQKKILRNG------VHVVVATPGRLKDLLEERACDLSKVTFVVLDEADRMLDEGFEKDIRRIIG--ATHPERQIAMFSATWPQSIQKLAHEFLVDPVKV 363
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 239 bits (611), Expect = 1.250e-71
Identity = 134/237 (56.54%), Postives = 163/237 (68.78%), Query Frame = 1 
Query:  148 KVRVEGMA-VTPLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFK----ARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCC----AASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            K+  EG A   P + F  A  P EV+      G+T PT IQ+ CWP+L+AGRD++G+AETGSGKTLAFSLPA++RI +     + +  +  GP MLV+ PTRELA Q A VI  AG    + SVCVYGGVPK EQ+  L   +GG     VVVATPGRL+DL+ E   DL  V  LVLDEADRMLDLGFEQD+R IIG C    AA+G R+TAMFSATWP+ +R+LAAEFL  PV+V
Sbjct:  133 KLTDEGAAPFPPHQTFGEAGFPPEVLGGC--EGFTAPTPIQAQCWPILSAGRDLIGVAETGSGKTLAFSLPALARIHRELGGGKALSRQRPGPLMLVICPTRELAQQCAAVIETAGAGAGLRSVCVYGGVPKHEQKRKLQNAQGG---AHVVVATPGRLRDLMSENAVDLGRVAHLVLDEADRMLDLGFEQDMRAIIGACPAPGAAAGGRRTAMFSATWPREVRELAAEFLDRPVRV 364
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A8K1FHU1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHU1_PYTOL)

HSP 1 Score: 238 bits (607), Expect = 3.500e-71
Identity = 128/218 (58.72%), Postives = 155/218 (71.10%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P++ FA  K   ++M      G+  PT IQS CWP+L +GRD++GIAETGSGKTLAFS+PA+  I     +  K  GP MLV+APTRELA+QSA+VIA AGK   + S C+YGG PK EQ+  L  G      V VVVATPGRLKDLV EG C+LS V  +VLDEADRMLD GFE+D+R IIG  +   +RQ AMFSATWP+SI+ LA EFLT+PVKV
Sbjct:  142 PVRTFAEIKFADKLMKVC--EGFAAPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPALVHIAAQPAISPKMPGPRMLVVAPTRELAMQSADVIANAGKLVGVKSTCIYGGTPKHEQKRILRAG------VHVVVATPGRLKDLVEEGACNLSRVTFVVLDEADRMLDEGFEKDIRMIIG--STHPERQIAMFSATWPQSIQKLAHEFLTDPVKV 349
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: M4BN34_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN34_HYAAE)

HSP 1 Score: 238 bits (606), Expect = 4.820e-71
Identity = 128/218 (58.72%), Postives = 157/218 (72.02%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P+  F      ++ M   T +G+ +PT IQS CWP+L +GRD++GIAETGSGKTLAF+LP +  I     V SK  GP MLV+APTRELA+QS+ VI+EAG+ C + SVC+YGGVPK  Q+ AL  G      V VVVATPGRLKDLV E  C+LS V  +VLDEADRMLD GFE+D+R IIG  +   +RQ AMFSATWP+SI+ LA EFLT+PVKV
Sbjct:  140 PVLSFQDVTFDSKFMN--TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFALPGLIHIAAQPAVSSKFPGPRMLVVAPTRELAMQSSAVISEAGRKCGLKSVCIYGGVPKHTQKKALRDG------VHVVVATPGRLKDLVEERCCNLSKVTFVVLDEADRMLDEGFEKDIRAIIG--STHPERQIAMFSATWPQSIQKLAHEFLTDPVKV 347
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A6G0WXV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXV8_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.020e-70
Identity = 128/218 (58.72%), Postives = 154/218 (70.64%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            PL  F     P  +MT  T  G+  PT IQ+ CWP+L +GRD++GIA+TGSGKTLAF++P +  I    K   K  GP MLV+APTRELA+Q AEVI+ AGK  +I+S+C+YGGVPK EQ+ AL  G      V VVVATPGRLKDL+ E  C LS V   VLDEADRMLD GFE+D+R IIG C A  +RQ AMFSATWP+SI+ LA EFL +PVKV
Sbjct:  132 PLLTFREVNFPKHMMTSTT--GFAAPTPIQALCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHIADQMKKSKKLQGPVMLVVAPTRELAIQCAEVISIAGKAANITSICIYGGVPKHEQKKALKQG------VHVVVATPGRLKDLMEEKACSLSGVTYCVLDEADRMLDDGFEKDIRRIIGGCHA--ERQIAMFSATWPQSIQTLAHEFLVDPVKV 339
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: G4ZE15_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZE15_PHYSP)

HSP 1 Score: 235 bits (599), Expect = 6.120e-70
Identity = 127/218 (58.26%), Postives = 156/218 (71.56%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P+  F      A+ M   T +G+ +PT IQS CWP+L +GRD++GIAETGSGKTLAFS+P +  I     V  K  GP MLV+APTRELA+QS+ VI+EAGK C + S+C+YGGVPK+ Q+ AL  G      V VVVATPGRLKDLV E  C+LS V  +VLDEADRMLD GFE+D+R IIG  +   +RQ AMFSATWP+SI+ LA EFL +PVKV
Sbjct:  148 PVLSFDDVTFEAKFMK--TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPAVSPKHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKQAQKKALRDG------VHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDDGFEKDIRAIIG--STHPERQIAMFSATWPQSIQKLAHEFLNDPVKV 355
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BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Match: A0A662Y627_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y627_9STRA)

HSP 1 Score: 235 bits (599), Expect = 7.290e-70
Identity = 128/218 (58.72%), Postives = 155/218 (71.10%), Query Frame = 1 
Query:  178 PLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGRDVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELALQSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATPGRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKRQTAMFSATWPKSIRDLAAEFLTNPVKV 831
            P+  FA     A+ M   T +G+T PT IQS CWP+L +GRD++GIAETGSGKTLAF++P +  I     V  K  GP MLV+APTRELA+QS+ VI+EAGK C + SVC+YGGVPK  Q+ AL  G      V VVVATPGRLKDL+ E  C+LS V  +VLDEADRMLD GFE+D+R IIG      +RQ AMFSATWP+SI+ LA EFL +PVKV
Sbjct:  156 PVLSFADVTFDAKFMK--TTKGFTTPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGLIHIADQPAVSHKFPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSVCIYGGVPKYTQKKALQDG------VHVVVATPGRLKDLMEERSCNLSKVTFVVLDEADRMLDEGFEKDIRLIIG--GTHPERQIAMFSATWPQSIQKLAHEFLNDPVKV 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16019.3499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE8_ECTSI1.320e-12984.19DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YU16_9STRA4.140e-8062.88DEAD box RNA helicase n=1 Tax=Tribonema minus TaxI... [more]
H3G5S8_PHYRM1.540e-7258.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6YE84_9STRA6.070e-7258.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3XUU1_HETAK1.250e-7156.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FHU1_PYTOL3.500e-7158.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BN34_HYAAE4.820e-7158.72Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6G0WXV8_9STRA2.020e-7058.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G4ZE15_PHYSP6.120e-7058.26Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A662Y627_9STRA7.290e-7058.72Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16019contigH-paniculata_contig16019:747..5588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue2.2e-106
Seed eggNOG ortholog2880.D8LEE8
Preferred nameDBP3
KEGG koko:K07466,ko:K14811
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000166,GO:0000460,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03032,ko03400
Exons3
Model size861
Cds size861
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16019.3499.1prot_H-paniculata_contig16019.3499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16019 747..5588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.7103138-CDS-H-paniculata_contig16019:746..11421622929282.7103138-CDS-H-paniculata_contig16019:746..1142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 747..1142 +
1691480800.1762588-CDS-H-paniculata_contig16019:746..11421691480800.1762588-CDS-H-paniculata_contig16019:746..1142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 747..1142 +
1622929282.728928-CDS-H-paniculata_contig16019:2248..25001622929282.728928-CDS-H-paniculata_contig16019:2248..2500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 2249..2500 +
1691480800.186463-CDS-H-paniculata_contig16019:2248..25001691480800.186463-CDS-H-paniculata_contig16019:2248..2500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 2249..2500 +
1622929282.7525578-CDS-H-paniculata_contig16019:5375..55881622929282.7525578-CDS-H-paniculata_contig16019:5375..5588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 5376..5588 +
1691480800.1947548-CDS-H-paniculata_contig16019:5375..55881691480800.1947548-CDS-H-paniculata_contig16019:5375..5588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16019 5376..5588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16019.3499.1

>prot_H-paniculata_contig16019.3499.1 ID=prot_H-paniculata_contig16019.3499.1|Name=mRNA_H-paniculata_contig16019.3499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
KRKKKKKNKDSSAAVTAESTTVSSSSSAQMAAASAAAAAAGGAATGAGTK
VRVEGMAVTPLKDFASAKMPAEVMTYVTERGWTQPTQIQSHCWPVLNAGR
DVVGIAETGSGKTLAFSLPAMSRIFKARKVGSKATGPSMLVLAPTRELAL
QSAEVIAEAGKHCDISSVCVYGGVPKREQRIALGGGRGGGGCVQVVVATP
GRLKDLVGEGVCDLSHVNSLVLDEADRMLDLGFEQDVRDIIGCCAASGKR
QTAMFSATWPKSIRDLAAEFLTNPVKVCMCVCLCNV*
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mRNA from alignment at H-paniculata_contig16019:747..5588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16019.3499.1 ID=mRNA_H-paniculata_contig16019.3499.1|Name=mRNA_H-paniculata_contig16019.3499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4842bp|location=Sequence derived from alignment at H-paniculata_contig16019:747..5588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGAAAGAAAAAAAAGAAGAATAAAGACTCCTCCGCTGCCGTTACTGC
CGAAAGTACCACGGTATCTTCGTCATCCTCTGCCCAAATGGCGGCCGCGT
CGGCGGCCGCCGCAGCCGCAGGCGGCGCGGCAACGGGCGCGGGGACCAAG
GTTCGAGTTGAAGGCATGGCGGTCACTCCCCTCAAAGATTTCGCCTCTGC
CAAGATGCCCGCGGAGGTGATGACGTACGTGACGGAAAGGGGATGGACCC
AGCCGACGCAGATCCAGAGTCATTGCTGGCCGGTGCTGAACGCGGGCCGC
GACGTGGTGGGAATCGCGGAGACGGGATCTGGGAAGACTCTTGCTTTTAG
TCTGCCCGCTATGTCTAGGATATTCAAGGCGCGGAAGGTAGGGTCTGTTT
GGCGGGAGAGCGTACTCATGTTTGCATGTCTCAGTTGTTGGACCGTTGAC
GGGAGGGATTCACGTATCAACAGAATTGGATCAACAAAGAGGTTGGATTC
TGCAGTTTGCTGTGGAATCATTAGAATAATGACTGTATCTTGGCATGATC
GAGCCCAAAGAACGCGTTCACTTTCAATATAAATGGTGTGCCGTTGAAAG
GGCTAATCTTGAATTTATGTAGAACCCAGAGTTTGTATTTTTCGGGCCGT
TGGTATCTCGAAATATTCATCATATATAGGGGTAAGATATACTCACGTAC
GCCGAGAGGACGTCTTTTTCTCTTCGCCTCGATCCGGCGGTACCTTTCTG
GGAGGAGTCACATCCGAAGAGGTGTTTTGTGTCCAGACGGTCGATTGTAC
AATGTGTGGTTGTGTCCGTCTCCTGTTGATGATCGTAGCGCACGTCGCCC
GTTGTTGGCTGGAAGTAATTTGGAAAAATACACTACTGCAGTACGGTAAT
GCCCGGAAATTAGCGAGGATCAACAGTATCAATATTACAGTGTACATAAC
GGTTTGTATTGTATATACAAAATTGCAAAGAATTGGGTAGCAGCTGATAT
TCAGTCAACAGTAAGTAAACGTGAGCTTTTCGTCCGTGTGCTGATAGGAT
TGGTCTTCGTACGCCAAGCCACTGACCCTTGTATCTCATCGAATCCAACT
CCTTGTTGTTGCACCGCTACTTCCAGCACAAGATCCATCCAACAGATCCA
GATCATGGACAATGACCTACTCGCTGTGTTTATGTCTGTCTGCCGATCAA
TACTTAGTCTGCACGTACAGTAAACCGTTTAAATTACAAGTGATAATACC
AAGGGTGTAGGCCACCCACCTCCACATTTTACCTCAGAAACAGGTACAAG
GCAAGGCAACGAACAGTGAAAAAGATTCGTTTCTTCTTCTTTTTCAGCGC
ACCGTCCGTTAGAACAAAACATTTCTGTGCGAGATGTCATCGCTTACAAT
ATCAAGTATTGCACTTTAATAGTGAATAGTCAAGGGTTTATTATCTTTTT
AGCGTCATTTTCGTGTGTGTTTTTTTGGCCACCGCAGCAGGCGGGGAGCA
AGAAGGCTACGGGACCCTCGATGCTGGTGCTCGCACCCACCCGAGAGCTG
GCCCTTCAGAGCGCCGAGGTGATCGCCGAGGCCGGCAAGCACTGCGACAT
ATCGAGCGTGTGCGTGTACGGGGGGGTGCCGAAGCGTGAGCAGAGGATAG
CTTTGGGCGGCGGGAGGGGTGGCGGTGGCTGCGTGCAGGTGGTGGTGGCG
ACGCCGGGACGACTAAAGGACCTGGTCGGCGAGGGCGTGTGTGATTTGTC
CCACGTGAGCTGTAGTATTTGGAACGTTTGGAGCACATGTCTGCCTCATA
TGATGGCATGGAGTACATGCCGGGTTCCCCTAGATAGTAGTATGCTGCAG
ATACGCCAGCAATACTTATTGATGCCTATATGACCATGAAAATGTGTGTG
TTTTGTGTGTGGTTTTTTCGCGTGTATTTATTTATGGCTGGCAGATTGGT
TGTATATTTATCTTGTTGTGAAAATGAAGGTGTATATGAGGATATATATA
TTGTAAGAACGGGAAAAACAAACAGCGCCTAAATACGGAAATTAACCCCT
TGGCACTTGAGGGGCTCTCCAAGGTATACATCTGAGGAGAATCGGAGCAG
ACAGATCAGAACCTTCAAGTATAGTCGACAGGTTTTTTAGCACTAGGCTT
GTCTTTTTGGAGATATTCTTGATTGCTCCTTTTTTTTTCCCTTGCAGCGG
AAGAAAAATATTCTTGTATCTCCGGAGATTAGCTGTACAGTTACTTTACA
ATAATTACTTGCGAAAAAAAAAAAAAAGTTCGGTCGTCGCTCGGGAAGGG
GGGGTTGGGGGGGGGGGGGGTGTTGTCATGTTTTGCATGCCATAGTTATA
AGACCCTTGACCATGCATCCTCGAGAGGACGGAACTCTGTTCCCGTCAGA
ATGATTTCCGATGGCCAATCGCTCTTTCCTATGCTAAATGTGGCTTTAAA
GTGTTTCACACTTGGGACGGATCGGATTATACACGGATCATACCCACCAT
TTTAACGGATTGAACGTCTGATCCGTACATCGTGGTATGACCCGTACATG
TTTCGCATCGGTGACCCGTACCCCACGGATCGTCTGTGCAATAAGTGACG
TTTCGGGGGGAAAAGTTTCCTCTTTGCGGACTTTTAATTACCGTTCGGGG
TATTGTCTCTGCTATTTGGGAAATAGAGTTACCGTGAGCCAGCAGCTTCG
TGTTCACAGGACGGAACTGTACGCTACGGATTGTCATTACGTATTTGCGA
GACAAATCTATACCCTGCGGATTATCAATATAAGTTTTTCCACACTGACC
CGTCCCCTACAGATCGTTCTCATAGATCTGTCTACCCCCCTCGCACGGAT
CATACGGATATTTATTTACCTTATCTACCTTCATTCTCGCCTCTTCAGTC
TAATTTAACGGGGGGGGGAGGGGGGGTATTTCCCTTAATGTGAAGGAGCG
AGTCTTCTGATAGTATGGGTGGGGCCACTTTCAGCGCCGTTGTTGAGCGC
GGTGATACACGTAAATATCCTCTTAAGCTACTGTATGGCGGTAAGGTAAT
GATGGTGATGATAATGTTCATAGATTCGGAATAGCTTTTCAAGTATGTTA
TCAAGTAACTCCTCGAAAAAGAATCTCGATAAGAGCGTAGCGAGTGGTGT
GGTCATAATCCAGTACCAGTTGTACATCTGGTTAACTGGAAAATCTAAAA
GATATGGTCAGGATAGGATATGACCATATCTTTTAGATTGCTTGCCTTAG
CCCAGAAATGTGTTGGAAACGTTACGAGGGAAAGTAAACATTAATCGCTC
CTCCTTTTTGTGTTTTTTTCGTAAAGGAGTATATGGATTATATGTTTCTC
GCTCCCCGACCTGCGTTGTGATTAATGACGCCTAATTTACTTGTTCGGCG
TCGCTGAAATATAACTAATAACTTGATGGTGTTTTTTGTAGTCGTTTGGT
AAGGGAGACGACTAATTGGGTGAAACATATGATTTTGAATCCATTCATTC
ATTGTTCATTTTTCAGTTGTTTAAGGAGGACAGCTATTAGTCATATATAT
GTTTTCCGATATTTTTTGTCAATTTCTGGCGTCTCGATTACCTACTTACT
CCAGATATGTATACGTCACCCGTTACACCCAGTGATGTTCAACTTTCACG
CCCCGGGCCAACTGCTTCGTACGGTAAAATCAACCCAAAACAGGATTTCT
CAGAGCCGTTTACCATCGAAATAATATTGTTTTGACCACGAAAAGTTTCA
CCCCCCCGGACAAGTACAAATACTTGCAAATGGTTTTCACAAAAAAAAAC
CCTGAAAGTATTCGCCTGACTTTCAGAATGAGCTCGAGTATTCCATGTGC
CCCCCGACCATCCACAACTGCTTATACTACTCATTGATCGAATGGACAGG
GGTGAGTACTATGTTCTGTGTGTCCGCTCATTCTGAAAGTCAGGCGAATC
CTTTTTTTTTTTTTTTTTGTGAAAACCATTTGCAAGTATTGGTATTTTTT
CGGGGGAAAGTGAAAAAAGAATTTCGCTCCTCCGCTCGCTTGGTGTCAAA
TCACAGTCGATTATAACAGCTAACAATATTTGGGCGAATGCCTGGATGTG
GAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCGGGGGTTAAAAAAAAA
AGCAAAAAAAAAAAAGCTAATAATAGTTGAGTCAAATGATATGAATAGGC
ATGACTATGGTTGACGGAGTAGTCTAAAACCAAGTGATTCTATAGTCAAC
TCAAATGTTGCCCAGTGCATGTAAACTTTGCACCAGCAAGGTAGGATGTT
TAAGTGTATGTCTTATCTGTCTCTACAGGCGTTTACTCTTGCGGTGTTTT
TTTTACGTTTTACTTGTATACTATGTATTATACTTGGGAGGTCAGTTGGC
ATCTTCGTGGTTGGTCGAACGGTTACTGGATATATGAACGCTGTTACAGT
GTACCTTGTTTCCCGTCTAGTTCAGGTATTATTGTTTTCCTCCTCCTCCT
CGATCTGCGTTGATGGTGAGTTGTGATTATTTATTACTTGCTCCTGCGGC
GAATCTCAATCGATGATCCCTATCCAGTAATCGTGGGCTGCTTGCTCCTG
CGGTGACTTTCATTGATGATCTCTGCAAGGTGAACTCGCTCGTGCTGGAC
GAGGCCGACCGCATGCTAGACCTGGGGTTCGAGCAGGACGTTCGCGACAT
CATTGGCTGCTGCGCGGCGTCGGGCAAGCGGCAGACAGCCATGTTCTCGG
CCACCTGGCCCAAGTCCATCCGCGACCTCGCGGCGGAGTTTCTCACAAAT
CCCGTAAAGGTGTGTATGTGTGTATGTTTGTGCAATGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16019:747..5588+

>mRNA_H-paniculata_contig16019.3499.1 ID=mRNA_H-paniculata_contig16019.3499.1|Name=mRNA_H-paniculata_contig16019.3499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig16019:747..5588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGAAAGAAAAAAAAGAAGAATAAAGACTCCTCCGCTGCCGTTACTGC
CGAAAGTACCACGGTATCTTCGTCATCCTCTGCCCAAATGGCGGCCGCGT
CGGCGGCCGCCGCAGCCGCAGGCGGCGCGGCAACGGGCGCGGGGACCAAG
GTTCGAGTTGAAGGCATGGCGGTCACTCCCCTCAAAGATTTCGCCTCTGC
CAAGATGCCCGCGGAGGTGATGACGTACGTGACGGAAAGGGGATGGACCC
AGCCGACGCAGATCCAGAGTCATTGCTGGCCGGTGCTGAACGCGGGCCGC
GACGTGGTGGGAATCGCGGAGACGGGATCTGGGAAGACTCTTGCTTTTAG
TCTGCCCGCTATGTCTAGGATATTCAAGGCGCGGAAGGTAGGGTCTAAAA
GAAAGAAAAAAAAGAAGAATAAAGACTCCTCCGCTGCCGTTACTGCCGAA
AGTACCACGGTATCTTCGTCATCCTCTGCCCAAATGGCGGCCGCGTCGGC
GGCCGCCGCAGCCGCAGGCGGCGCGGCAACGGGCGCGGGGACCAAGGTTC
GAGTTGAAGGCATGGCGGTCACTCCCCTCAAAGATTTCGCCTCTGCCAAG
ATGCCCGCGGAGGTGATGACGTACGTGACGGAAAGGGGATGGACCCAGCC
GACGCAGATCCAGAGTCATTGCTGGCCGGTGCTGAACGCGGGCCGCGACG
TGGTGGGAATCGCGGAGACGGGATCTGGGAAGACTCTTGCTTTTAGTCTG
CCCGCTATGTCTAGGATATTCAAGGCGCGGAAGGTAGGGTCTAAGGCTAC
GGGACCCTCGATGCTGGTGCTCGCACCCACCCGAGAGCTGGCCCTTCAGA
GCGCCGAGGTGATCGCCGAGGCCGGCAAGCACTGCGACATATCGAGCGTG
TGCGTGTACGGGGGGGTGCCGAAGCGTGAGCAGAGGATAGCTTTGGGCGG
CGGGAGGGGTGGCGGTGGCTGCGTGCAGGTGGTGGTGGCGACGCCGGGAC
GACTAAAGGACCTGGTCGGCGAGGGCGTGTGTGATTTGTCCCACAAGGCT
ACGGGACCCTCGATGCTGGTGCTCGCACCCACCCGAGAGCTGGCCCTTCA
GAGCGCCGAGGTGATCGCCGAGGCCGGCAAGCACTGCGACATATCGAGCG
TGTGCGTGTACGGGGGGGTGCCGAAGCGTGAGCAGAGGATAGCTTTGGGC
GGCGGGAGGGGTGGCGGTGGCTGCGTGCAGGTGGTGGTGGCGACGCCGGG
ACGACTAAAGGACCTGGTCGGCGAGGGCGTGTGTGATTTGTCCCACGTGA
ACTCGCTCGTGCTGGACGAGGCCGACCGCATGCTAGACCTGGGGTTCGAG
CAGGACGTTCGCGACATCATTGGCTGCTGCGCGGCGTCGGGCAAGCGGCA
GACAGCCATGTTCTCGGCCACCTGGCCCAAGTCCATCCGCGACCTCGCGG
CGGAGTTTCTCACAAATCCCGTAAAGGTGTGTATGTGTGTATGTTTGTGC
AATGTTTAGGTGAACTCGCTCGTGCTGGACGAGGCCGACCGCATGCTAGA
CCTGGGGTTCGAGCAGGACGTTCGCGACATCATTGGCTGCTGCGCGGCGT
CGGGCAAGCGGCAGACAGCCATGTTCTCGGCCACCTGGCCCAAGTCCATC
CGCGACCTCGCGGCGGAGTTTCTCACAAATCCCGTAAAGGTGTGTATGTG
TGTATGTTTGTGCAATGTTTAG
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