mRNA_H-paniculata_contig1600.3487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1600.3487.1
Unique NamemRNA_H-paniculata_contig1600.3487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1600.3487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1600contigH-paniculata_contig1600:23115..24773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4496
Ec32 orthologEc-19_002000.1
Exons3
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1600.3487.1prot_H-paniculata_contig1600.3487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1600 23115..24773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929281.3818073-CDS-H-paniculata_contig1600:23114..232191622929281.3818073-CDS-H-paniculata_contig1600:23114..23219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 23115..23219 +
1691480799.6102037-CDS-H-paniculata_contig1600:23114..232191691480799.6102037-CDS-H-paniculata_contig1600:23114..23219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 23115..23219 +
1622929281.3963482-CDS-H-paniculata_contig1600:23598..237631622929281.3963482-CDS-H-paniculata_contig1600:23598..23763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 23599..23763 +
1691480799.6206763-CDS-H-paniculata_contig1600:23598..237631691480799.6206763-CDS-H-paniculata_contig1600:23598..23763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 23599..23763 +
1622929281.4089918-CDS-H-paniculata_contig1600:24602..247731622929281.4089918-CDS-H-paniculata_contig1600:24602..24773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 24603..24773 +
1691480799.6310358-CDS-H-paniculata_contig1600:24602..247731691480799.6310358-CDS-H-paniculata_contig1600:24602..24773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 24603..24773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1600.3487.1

>prot_H-paniculata_contig1600.3487.1 ID=prot_H-paniculata_contig1600.3487.1|Name=mRNA_H-paniculata_contig1600.3487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MVFVSFRKQILKWQEYEERQKEGRKRLREYLHTVKKKQAEAQKADRDKER
VITFFSDNPDPNRAYPCRIEYNAEKEAEWRRAWCSDLEAQVKLKQQEARE
AKQAERTRDNLRATQLNAAIKVDRRREAEMHKQDRARIQRRAVKLA*
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mRNA from alignment at H-paniculata_contig1600:23115..24773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1600.3487.1 ID=mRNA_H-paniculata_contig1600.3487.1|Name=mRNA_H-paniculata_contig1600.3487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1659bp|location=Sequence derived from alignment at H-paniculata_contig1600:23115..24773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTGTTTCATTTCGAAAGCAGATCTTGAAATGGCAGGAGTACGA
GGAGCGGCAAAAGGAGGGAAGGAAGAGGCTTAGGGAATATCTTCACACTG
TCAAGGTGAGGCAGGGGGGGGGGGACGACTTTTCCATCCGAAAACCCTCC
ACGTTAAAAACAAAACTTGCATAAAGTGCGCATGGAGTGTGTCGAAGCAG
TATGTTTCGAATGTCGCAAGCACTTGTTTTTCAGTTTCAGCGTTACCATT
AAATACGGGAGGCGCTGATGCACTAGAGCGCTGTGGGAATCGATACAGTA
GAGCGTATATGCAATGAACAATTTTGTAGAATGATAAATTGACGACTCGG
CGTGATCTGCTTTGAATCTCAGTTACGCTGCCTCCGCGCGTGCAATTCGA
GTGTGCCACTCTTTTCTCTGATAGTTGAATGAAATGTTTCCCTCCGCGTC
GCGTTCTCCCCAAAACATAATGATGTTTTCGGAGAAGAAGCAAGCTGAAG
CGCAGAAGGCGGACAGAGATAAGGAGAGGGTCATAACCTTTTTTTCTGAC
AACCCGGACCCAAACCGCGCATACCCCTGCCGAATCGAGTATAACGCGGA
AAAGGAGGCGGAGTGGAGACGGGCATGGTGCAGTGATCTTGAGGCACAGG
TAATAGGAAAACGAAGGAGCTTCAGCTAGAGTAAGAGTCACGCGCTCGCA
GTTGTGTTGTGTCAAAGCGTAGTATAAGCCCTCGCAGGCGCTCTTGTGGC
AGTGTTGGTAAAGGGTGCTTGCTCGAGACACGAATAAGCATCAACTATTT
GGATCCCTGTATGGGTTGAATTTTTTCTCAACACAACGCCTTGCAGTTCA
TGGCGCGAGCATACCCCTTTCGTTTTTTCAGCTGCCAGCTTGTCCGACAG
TTGGGCTTCGTTGTGATGGATACGTCAAATCCATACGTCATAGAGGCACT
TTTAAAGATGTATGTCTCCCCTCTCCCTGGCTTGCCTTCAAAATGATGAG
AGCTGTTACCAATCGTTGAACGACCGCAAAACCCCTTCAATTAAGAATGC
ACCCGCCCCGTTTGAGGACACACCCGAGTGCCTGCTCTACGGCGAGAAAG
TATGAATGGGTATTCAAGGATGATACCTATCCTTCTGAAGCTGCCACAGT
TCATTGGACGCGATTGCGCGTCCTCACCTGTAATATGCATACAAACAGTG
TTGTGTCTACCTGTAGGACACACATTGTAATGATATTCTGTCCGCTCCCT
GTTTGTTTGCACCGGTTTTAACGTCGCAGCTTCAATACGGGGAGCTTCGC
TCGCTTCGAGAACACCCCCCTCCCTCCTCTGGGAATAGATTGGTGCGCTC
TGAATGGTCGACGTTTGTTGCGATTCTTACCACGCTGCGTCATTGAAGTA
ATGGTGTAAAAAAAGACTTGACCCTCTTGCCCTTTGCCTCTCTTCCGCTC
CCGCAAATGTCTTCACTTTCCGCGTACATGTGGAAAAGGTAAAACTGAAG
CAACAAGAAGCACGAGAGGCCAAGCAGGCCGAGCGCACTCGGGATAACCT
TCGAGCGACCCAACTTAACGCTGCTATCAAGGTCGATAGGCGTCGTGAGG
CGGAAATGCATAAGCAGGACCGAGCTCGAATTCAGAGGCGAGCTGTGAAG
TTGGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1600:23115..24773+

>mRNA_H-paniculata_contig1600.3487.1 ID=mRNA_H-paniculata_contig1600.3487.1|Name=mRNA_H-paniculata_contig1600.3487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig1600:23115..24773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTGTTTCATTTCGAAAGCAGATCTTGAAATGGCAGGAGTACGA
GGAGCGGCAAAAGGAGGGAAGGAAGAGGCTTAGGGAATATCTTCACACTG
TCAAGATGGTGTTTGTTTCATTTCGAAAGCAGATCTTGAAATGGCAGGAG
TACGAGGAGCGGCAAAAGGAGGGAAGGAAGAGGCTTAGGGAATATCTTCA
CACTGTCAAGAAGAAGCAAGCTGAAGCGCAGAAGGCGGACAGAGATAAGG
AGAGGGTCATAACCTTTTTTTCTGACAACCCGGACCCAAACCGCGCATAC
CCCTGCCGAATCGAGTATAACGCGGAAAAGGAGGCGGAGTGGAGACGGGC
ATGGTGCAGTGATCTTGAGGCACAGAAGAAGCAAGCTGAAGCGCAGAAGG
CGGACAGAGATAAGGAGAGGGTCATAACCTTTTTTTCTGACAACCCGGAC
CCAAACCGCGCATACCCCTGCCGAATCGAGTATAACGCGGAAAAGGAGGC
GGAGTGGAGACGGGCATGGTGCAGTGATCTTGAGGCACAGGTAAAACTGA
AGCAACAAGAAGCACGAGAGGCCAAGCAGGCCGAGCGCACTCGGGATAAC
CTTCGAGCGACCCAACTTAACGCTGCTATCAAGGTCGATAGGCGTCGTGA
GGCGGAAATGCATAAGCAGGACCGAGCTCGAATTCAGAGGCGAGCTGTGA
AGTTGGCGTGAGTAAAACTGAAGCAACAAGAAGCACGAGAGGCCAAGCAG
GCCGAGCGCACTCGGGATAACCTTCGAGCGACCCAACTTAACGCTGCTAT
CAAGGTCGATAGGCGTCGTGAGGCGGAAATGCATAAGCAGGACCGAGCTC
GAATTCAGAGGCGAGCTGTGAAGTTGGCGTGA
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