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Homology
BLAST of mRNA_H-paniculata_contig1600.3486.1 vs. uniprot
Match: D7FXX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX9_ECTSI) HSP 1 Score: 202 bits (513), Expect = 3.400e-57 Identity = 156/426 (36.62%), Postives = 220/426 (51.64%), Query Frame = 1
Query: 7 ELVSTCAKRDRASRTSYGRVWKGLLSSMEEVLRSGRGAQLPHLGTVTYVTRSQRESSSAGHRGYVFVPNPNFVRAYSIIQLIPPKFALLAPFVPVSSARVAHAAEVNHEYARAVIASIVDAIGRRACSGATLRLPFGEIGMLLMKGRTIRFEFAEGFRRPRMDSRADEYSAHVKRILGNLDARARASTS--PRDLESNLTPPTVRRAPSS------------------HAGRRAIHSKEKVPLTTPVGENQIHHAGDGVSLATKLTHSTTGDPSPTSRSLGARPTTVGGVTSRREDRSTVASI---SPALGHDAGLCSSRTNVVGEPSPCRRRGALPTAPAHGAFVASGTTARGFIEAAGVAVATGTAATVGSRGSERLKVEEKKSEHSISPRAAKKVLPHFLAIGNSGNQALLVKEGPEIVQRQA 1215
+L+S CAK++R+S++ Y RVW+ L+ EEVL SGRGA + LGTVTY++R F RA+S+IQ PP+ +LLAP V +SSARV H A V+H+Y R + +IVD IGRR CSG+ L LPFG +G L+ K RT+ F FA+GFR P+ + +Y V+RIL ++A+A+A P ++ T P +PSS H+ R+A +S + + +G +H + S+ + ++ GD S GA PT+V D + + + +L G +S+ ++ EP R P A VA G R E A A V +R + ++ ISP AKKVLPHFLAIGN G+QAL+ KEG EIVQRQA
Sbjct: 2 DLISACAKQNRSSKSKYQRVWRALVLCAEEVLASGRGATIEKLGTVTYISR--------------------FARAFSVIQRAPPQRSLLAPAVSISSARVGHTAGVDHDYTRVALGAIVDWIGRRVCSGSNLSLPFGRLGTLVGKERTLSFVFADGFRPPKTMAVQGKYDRDVRRILAAIEAKAKADPHEPPGGEHASTTRPET--SPSSGCGGANNRSATENGSQEPHSWRKARNSSQSGSARSGIGSEPLHLSTRS-SVLSSYRRNSDGD------SRGAEPTSVDVA-----DPAAAGDVRRGTASLPRQRGTRNSQDSLSEEPEAPTPR---PMITGAAAVVAGGP--RTNRETAXXXXXXXXXARVENRA--------QGNKGDISPGTAKKVLPHFLAIGNPGSQALVAKEGAEIVQRQA 380
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1297 |
| Cds size | 1296 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1600.3486.1 >prot_H-paniculata_contig1600.3486.1 ID=prot_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp
MHELVSTCAKRDRASRTSYGRVWKGLLSSMEEVLRSGRGAQLPHLGTVTY VTRSQRESSSAGHRGYVFVPNPNFVRAYSIIQLIPPKFALLAPFVPVSSA RVAHAAEVNHEYARAVIASIVDAIGRRACSGATLRLPFGEIGMLLMKGRT IRFEFAEGFRRPRMDSRADEYSAHVKRILGNLDARARASTSPRDLESNLT PPTVRRAPSSHAGRRAIHSKEKVPLTTPVGENQIHHAGDGVSLATKLTHS TTGDPSPTSRSLGARPTTVGGVTSRREDRSTVASISPALGHDAGLCSSRT NVVGEPSPCRRRGALPTAPAHGAFVASGTTARGFIEAAGVAVATGTAATV GSRGSERLKVEEKKSEHSISPRAAKKVLPHFLAIGNSGNQALLVKEGPEI VQRQAVARFDVKRVAHKDLDEKEDADMRRRQA back to topmRNA from alignment at H-paniculata_contig1600:18643..22579+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1600.3486.1 ID=mRNA_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3937bp|location=Sequence derived from alignment at H-paniculata_contig1600:18643..22579+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCACGAGTTGGTGTCAACATGCGCCAAGCGTGATCGAGCGAGTCGAAC
AAGCTACGGTCGGGTATGGAAGGGATTACTGTCAAGCATGGAGGAGGTTC
TCCGTTCGGGTCGAGGGGCACAGCTACCACACGTACGCAGAGAGTTTTAC
GGCATACAGCTGGCAGGGCAGCAGTATTTGTGCGCGTAGTCCCCCTCATA
CTAAGGGAATCTAACTTTCTTGTGGTAGCAGGAATCACGTACAGCATCGA
TACATAAATAGGAGAATTGCCGCATTTTCCCCGTCGCTATGGCGTAGCGC
TTTCGGTATCGAGAATCAACCGTTTGCCACCGAAAGAGAAAGTTTGCTAC
TACGTCGTAGGCGTAGGATATCGAAGCTGACCCTAACGGGCCTGTTCTTA
GTGCACAGCAGTCCACACGTTCCGTCTCTCTCTCAATATATATATATACT
GTATAACTTAGGGGAAAGTGTAGTGCAGTACTGCAATAATAAGCGTACGA
GGTAAACACTGCAACGCACTGTAGCTCCGTATGTGTTGCTTATCGTGCTG
GTTGTTGAACTGTAGTGTGCGCAGTGCATTAACCAGGGTAGAAATATAGA
AAATGCGCAGTGAAGTCCAAGCCTGCGAATCCTAGGAAAAAACGACGACG
ACTCACAATTATTTTTAGGTTGGTTTCAAAGCTGCCTCTCAATACTATTT
TAGAGCAGAGACAACAAAAAAATTAAGGATACATCTTTCTCTGCATACTT
CAACGGCGTCTGGCAGCTCGGGACGGTGACCTACGTGACGCGGTCACAGC
GCGAAAGCAGCAGCGCTGGGCACAGGGGCTATGTGTTTGTCCCAAACCCC
AAGTGAGCTTAAATCCAAGAATTAGGGTGGGTTTGTAACTCACCGCGCAT
CCCAACCCTGATAGTTTGGATCGACCTCGATCTGCCGAATACATTGTAGT
CATGTTTCAATCGCACTCGAGAGGAGATCGCTGAGAGCGTAGTAACGTGT
ACGATTTGACTTCTTAACGTGGGAATTACACTTGGCATTTGGCCAAGGCT
GATAGTGTAGAGTAGTCAACAAAGGAAGAACATAGTGCCATCGAAGAGAG
ACATTGCGTCATAGTATACCCTCAAGTTCGAGGGGGTCGTCACCATGGCA
TAGTGCATCCATGCTATTCACTAGAGAAGGTGGAGGCGACTGAATTTCCA
CGATCCCTGCTGCCCGATATACATGAGGTTCCGTTGTCACCATGCACCTC
ATTTTGTCTCCAATATTTCTCCGTCTGGCCACGAAAAAATGTTCATTTGT
TTCTAACGCACCAGTTTCGTCAGGGCGTACAGCATAATTCAGCTGATTCC
TCCAAAATTTGCGCTTTTAGCACCATTCGTGCCTGTTTCGTCGGCCAGAG
TCGCACATGCCGCGGAGGTCAACCACGAGTACGCTCGGGCTGTGATTGGT
GAGGATGACTATGATTCACTGATGCTTGAAAAGAGGAATTATTCCATAGT
TCCTATGGGATCTCTCGCGCCAGGGATTAAGAGAAACGCAGCGCATGGAA
GGAGAGGGGCATTGATAGTGAACACCGTTTTTTTTCGGTGCATCCAGATA
TGTTTTTAATAATCGATTAGAAAATGCTCATCGAATTGTATTTAAATGTC
GGAGGCATTTTGAGCGTTTTCCGAGGCAATTTTGTTGCTTTCAACGTGAT
CAGGCGTTCAATCGGTGTCCCTTTTCGTGGCATTCGTTGATTTAAACGAA
ACCTCAGTGGCTTCGCCCCAGCAAACATGTTGTCCAAACGAGGGACGGGG
CGAATGTTACCTAGCGTCCATGTCATTAAAAACAACGTCGGAGGGCCAAC
CATGTTTATATCTCGGTCCCTTGCATTTATTCGAAATTACCGCTTCTCGC
TGTGACGTGCTAAAATCTGCAGCTTCGATAGTTGATGCCATCGGAAGACG
GGCTTGCTCCGGCGCCACGCTGCGCCTTCCTTTTGGGGAGATTGGCATGC
TGTTGATGAAGGGGCGAACGATTAGGTTCGAGTTTGCAGAGGGATTTCGT
CGTCCTAGGATGGATTCGCGTGCAGTAGAGGCAAGTGGTGCAGATTGTGT
TCCGTGAGAATTGCTGCTCTCCATTGGGTTGGCCGCGTCTCACTGAAAGT
CGTAGTCATGCACCCATAAACGTAACATAAAGTTCATGGATTTGATCAGC
ATACAATGGATATCCGTGATAGGTAAGCAGTACGGCACAGGGGATACTCC
AATTCGAGGCGAGTCGGTTTAATGTGAAAACGATTTACGGCGGGTCAAAC
CAGCTTGTCACCGAATCAAATTTTCATAAATTTCCTATATATTACGACTA
TTAAAATAAGGCAGTTTTCGGTTCAAGGCGGACGCTTTTGACGTGTCACC
ACTCCATCAGGGTATCCACTGTACGTCTGTCTCGGTAGGTGCAAATATAC
CGATTGACAGGTAATCTTGGAATCTAGAGAAAGAAGCACCATACACCCCC
TCCTTCGTGATCGCAATACGCCCAAACAGGGTGCCGTGGTCTCCCACCCT
TTTTGGCATTGCAATTTTACGATCTCCTTTCTTCCTTGCATCCCCCTCTC
CGTAGTTTTCCCTTTGTCAGTTTTTCATTCCGTCGTAGACCAATCACAAT
GCGCCCCTCGTATTCTTCCCATCCACATATATTTTCCGCATAGGACGAAT
ACAGCGCTCATGTGAAACGGATTCTTGGCAATCTCGACGCGAGGGCTAGG
GCATCAACTTCCCCGCGAGATCTCGAGTCGAACCTTACGCCGCCAACCGT
GAGGAGGGCACCTTCTTCCCATGCTGGACGTCGAGCTATTCATTCAAAAG
AGAAAGTCCCACTTACAACACCAGTCGGAGAAAATCAGATTCATCATGCT
GGCGATGGGGTATCGTTGGCGACGAAACTGACTCATTCAACCACTGGAGA
CCCGAGCCCTACCAGTAGGAGTTTAGGGGCTAGACCTACTACTGTTGGTG
GCGTCACAAGCCGTCGGGAGGATCGCTCCACCGTAGCCAGCATATCTCCG
GCACTGGGTCATGACGCTGGTCTTTGCAGCAGTCGGACGAACGTCGTTGG
TGAGCCATCCCCATGTCGCCGTCGTGGTGCACTTCCTACGGCTCCGGCTC
ACGGTGCTTTCGTCGCTTCTGGGACGACGGCCAGGGGGTTCATTGAAGCT
GCGGGGGTGGCGGTGGCGACTGGTACGGCGGCGACGGTGGGATCAAGAGG
TAGCGAGAGACTTAAAGTGGAGGAGAAGAAATCAGAGCACAGCATATCGC
CGAGGGCGGCAAAGAAGGTTCTTCCTCATTTCTTGGCGATAGGGAATTCG
GGAAATCAGGCGCTCCTCGTGAAGGAAGGACCCGAGATCGTACAACGGCA
GGTGATTTTTCTCCGGTCAGATTAGAGCTAGCTCCGTGAGGAATCGTACA
CCACGCGTCTCTAGGATCAGTGCATAGGTCCATCCGTAGATTTTTGCAGA
TACCACACACATGGGGCACGCGAAACTCCAGCAGGTCTGTGCAAGAAAAG
TAAGTCATATTTTGGAAAATGCTGCTCAACAAGCAGGGGCCCGATCTCCA
CCGACACCCGACACTGCCCGCGAGCGTTGGTCTTCGGTTCTCCCAATTTA
ATTCACTTGCAACCGCACCACTTACTAACCTCACGTTACCGTCTTGTTGT
CGCTGGTAACCCTACCCGAGTACCAGCGTCATGAAAATGACAATCAGCAC
GTACATAACACTTCGTGATTCTTCAAGTGCTGTGTCAGTGAAGCAGTTGC
ATCTCTCGACCTCCGCAAATCAACTGCCTTTATCTCTTCTGGCCCCATAA
CAGGCTGTGGCTCGTTTCGACGTAAAGAGAGTAGCACATAAGGACCTCGA
TGAAAAGGAGGACGCTGACATGCGCAGACGGCAGGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1600:18643..22579+ >mRNA_H-paniculata_contig1600.3486.1 ID=mRNA_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig1600:18643..22579+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCACGAGTTGGTGTCAACATGCGCCAAGCGTGATCGAGCGAGTCGAAC AAGCTACGGTCGGGTATGGAAGGGATTACTGTCAAGCATGGAGGAGGTTC TCCGTTCGGGTCGAGGGGCACAGCTACCACACATGCACGAGTTGGTGTCA ACATGCGCCAAGCGTGATCGAGCGAGTCGAACAAGCTACGGTCGGGTATG GAAGGGATTACTGTCAAGCATGGAGGAGGTTCTCCGTTCGGGTCGAGGGG CACAGCTACCACACCTCGGGACGGTGACCTACGTGACGCGGTCACAGCGC GAAAGCAGCAGCGCTGGGCACAGGGGCTATGTGTTTGTCCCAAACCCCAA CTCGGGACGGTGACCTACGTGACGCGGTCACAGCGCGAAAGCAGCAGCGC TGGGCACAGGGGCTATGTGTTTGTCCCAAACCCCAATTTCGTCAGGGCGT ACAGCATAATTCAGCTGATTCCTCCAAAATTTGCGCTTTTAGCACCATTC GTGCCTGTTTCGTCGGCCAGAGTCGCACATGCCGCGGAGGTCAACCACGA GTACGCTCGGGCTGTGATTGTTTCGTCAGGGCGTACAGCATAATTCAGCT GATTCCTCCAAAATTTGCGCTTTTAGCACCATTCGTGCCTGTTTCGTCGG CCAGAGTCGCACATGCCGCGGAGGTCAACCACGAGTACGCTCGGGCTGTG ATTGCTTCGATAGTTGATGCCATCGGAAGACGGGCTTGCTCCGGCGCCAC GCTGCGCCTTCCTTTTGGGGAGATTGGCATGCTGTTGATGAAGGGGCGAA CGATTAGGTTCGAGTTTGCAGAGGGATTTCGTCGTCCTAGGATGGATTCG CGTGCACTTCGATAGTTGATGCCATCGGAAGACGGGCTTGCTCCGGCGCC ACGCTGCGCCTTCCTTTTGGGGAGATTGGCATGCTGTTGATGAAGGGGCG AACGATTAGGTTCGAGTTTGCAGAGGGATTTCGTCGTCCTAGGATGGATT CGCGTGCAGACGAATACAGCGCTCATGTGAAACGGATTCTTGGCAATCTC GACGCGAGGGCTAGGGCATCAACTTCCCCGCGAGATCTCGAGTCGAACCT TACGCCGCCAACCGTGAGGAGGGCACCTTCTTCCCATGCTGGACGTCGAG CTATTCATTCAAAAGAGAAAGTCCCACTTACAACACCAGTCGGAGAAAAT CAGATTCATCATGCTGGCGATGGGGTATCGTTGGCGACGAAACTGACTCA TTCAACCACTGGAGACCCGAGCCCTACCAGTAGGAGTTTAGGGGCTAGAC CTACTACTGTTGGTGGCGTCACAAGCCGTCGGGAGGATCGCTCCACCGTA GCCAGCATATCTCCGGCACTGGGTCATGACGCTGGTCTTTGCAGCAGTCG GACGAACGTCGTTGGTGAGCCATCCCCATGTCGCCGTCGTGGTGCACTTC CTACGGCTCCGGCTCACGGTGCTTTCGTCGCTTCTGGGACGACGGCCAGG GGGTTCATTGAAGCTGCGGGGGTGGCGGTGGCGACTGGTACGGCGGCGAC GGTGGGATCAAGAGGTAGCGAGAGACTTAAAGTGGAGGAGAAGAAATCAG AGCACAGCATATCGCCGAGGGCGGCAAAGAAGGTTCTTCCTCATTTCTTG GCGATAGGGAATTCGGGAAATCAGGCGCTCCTCGTGAAGGAAGGACCCGA GATCGTACAACGGCAGGACGAATACAGCGCTCATGTGAAACGGATTCTTG GCAATCTCGACGCGAGGGCTAGGGCATCAACTTCCCCGCGAGATCTCGAG TCGAACCTTACGCCGCCAACCGTGAGGAGGGCACCTTCTTCCCATGCTGG ACGTCGAGCTATTCATTCAAAAGAGAAAGTCCCACTTACAACACCAGTCG GAGAAAATCAGATTCATCATGCTGGCGATGGGGTATCGTTGGCGACGAAA CTGACTCATTCAACCACTGGAGACCCGAGCCCTACCAGTAGGAGTTTAGG GGCTAGACCTACTACTGTTGGTGGCGTCACAAGCCGTCGGGAGGATCGCT CCACCGTAGCCAGCATATCTCCGGCACTGGGTCATGACGCTGGTCTTTGC AGCAGTCGGACGAACGTCGTTGGTGAGCCATCCCCATGTCGCCGTCGTGG TGCACTTCCTACGGCTCCGGCTCACGGTGCTTTCGTCGCTTCTGGGACGA CGGCCAGGGGGTTCATTGAAGCTGCGGGGGTGGCGGTGGCGACTGGTACG GCGGCGACGGTGGGATCAAGAGGTAGCGAGAGACTTAAAGTGGAGGAGAA GAAATCAGAGCACAGCATATCGCCGAGGGCGGCAAAGAAGGTTCTTCCTC ATTTCTTGGCGATAGGGAATTCGGGAAATCAGGCGCTCCTCGTGAAGGAA GGACCCGAGATCGTACAACGGCAGGCTGTGGCTCGTTTCGACGTAAAGAG AGTAGCACATAAGGACCTCGATGAAAAGGAGGACGCTGACATGCGCAGAC GGCAGGCGGCTGTGGCTCGTTTCGACGTAAAGAGAGTAGCACATAAGGAC CTCGATGAAAAGGAGGACGCTGACATGCGCAGACGGCAGGCG back to top
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