mRNA_H-paniculata_contig1600.3486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1600.3486.1
Unique NamemRNA_H-paniculata_contig1600.3486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1600.3486.1 vs. uniprot
Match: D7FXX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX9_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 3.400e-57
Identity = 156/426 (36.62%), Postives = 220/426 (51.64%), Query Frame = 1
Query:    7 ELVSTCAKRDRASRTSYGRVWKGLLSSMEEVLRSGRGAQLPHLGTVTYVTRSQRESSSAGHRGYVFVPNPNFVRAYSIIQLIPPKFALLAPFVPVSSARVAHAAEVNHEYARAVIASIVDAIGRRACSGATLRLPFGEIGMLLMKGRTIRFEFAEGFRRPRMDSRADEYSAHVKRILGNLDARARASTS--PRDLESNLTPPTVRRAPSS------------------HAGRRAIHSKEKVPLTTPVGENQIHHAGDGVSLATKLTHSTTGDPSPTSRSLGARPTTVGGVTSRREDRSTVASI---SPALGHDAGLCSSRTNVVGEPSPCRRRGALPTAPAHGAFVASGTTARGFIEAAGVAVATGTAATVGSRGSERLKVEEKKSEHSISPRAAKKVLPHFLAIGNSGNQALLVKEGPEIVQRQA 1215
            +L+S CAK++R+S++ Y RVW+ L+   EEVL SGRGA +  LGTVTY++R                    F RA+S+IQ  PP+ +LLAP V +SSARV H A V+H+Y R  + +IVD IGRR CSG+ L LPFG +G L+ K RT+ F FA+GFR P+  +   +Y   V+RIL  ++A+A+A     P    ++ T P    +PSS                  H+ R+A +S +     + +G   +H +    S+ +    ++ GD      S GA PT+V        D +    +   + +L    G  +S+ ++  EP     R   P      A VA G   R   E A         A V +R         + ++  ISP  AKKVLPHFLAIGN G+QAL+ KEG EIVQRQA
Sbjct:    2 DLISACAKQNRSSKSKYQRVWRALVLCAEEVLASGRGATIEKLGTVTYISR--------------------FARAFSVIQRAPPQRSLLAPAVSISSARVGHTAGVDHDYTRVALGAIVDWIGRRVCSGSNLSLPFGRLGTLVGKERTLSFVFADGFRPPKTMAVQGKYDRDVRRILAAIEAKAKADPHEPPGGEHASTTRPET--SPSSGCGGANNRSATENGSQEPHSWRKARNSSQSGSARSGIGSEPLHLSTRS-SVLSSYRRNSDGD------SRGAEPTSVDVA-----DPAAAGDVRRGTASLPRQRGTRNSQDSLSEEPEAPTPR---PMITGAAAVVAGGP--RTNRETAXXXXXXXXXARVENRA--------QGNKGDISPGTAKKVLPHFLAIGNPGSQALVAKEGAEIVQRQA 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1600.3486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXX9_ECTSI3.400e-5736.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1600contigH-paniculata_contig1600:18643..22579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1297
Cds size1296
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1600.3486.1prot_H-paniculata_contig1600.3486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1600 18643..22579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929281.247804-CDS-H-paniculata_contig1600:18642..187741622929281.247804-CDS-H-paniculata_contig1600:18642..18774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 18643..18774 +
1691480799.5443819-CDS-H-paniculata_contig1600:18642..187741691480799.5443819-CDS-H-paniculata_contig1600:18642..18774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 18643..18774 +
1622929281.261133-CDS-H-paniculata_contig1600:19408..194941622929281.261133-CDS-H-paniculata_contig1600:19408..19494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 19409..19494 +
1691480799.5537364-CDS-H-paniculata_contig1600:19408..194941691480799.5537364-CDS-H-paniculata_contig1600:19408..19494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 19409..19494 +
1622929281.2757237-CDS-H-paniculata_contig1600:19956..200901622929281.2757237-CDS-H-paniculata_contig1600:19956..20090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 19957..20090 +
1691480799.562452-CDS-H-paniculata_contig1600:19956..200901691480799.562452-CDS-H-paniculata_contig1600:19956..20090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 19957..20090 +
1622929281.3053641-CDS-H-paniculata_contig1600:20564..207161622929281.3053641-CDS-H-paniculata_contig1600:20564..20716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 20565..20716 +
1691480799.5717614-CDS-H-paniculata_contig1600:20564..207161691480799.5717614-CDS-H-paniculata_contig1600:20564..20716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 20565..20716 +
1622929281.319193-CDS-H-paniculata_contig1600:21335..220431622929281.319193-CDS-H-paniculata_contig1600:21335..22043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 21336..22043 +
1691480799.5866404-CDS-H-paniculata_contig1600:21335..220431691480799.5866404-CDS-H-paniculata_contig1600:21335..22043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 21336..22043 +
1622929281.329745-CDS-H-paniculata_contig1600:22495..225791622929281.329745-CDS-H-paniculata_contig1600:22495..22579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 22496..22579 +
1691480799.601374-CDS-H-paniculata_contig1600:22495..225791691480799.601374-CDS-H-paniculata_contig1600:22495..22579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1600 22496..22579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1600.3486.1

>prot_H-paniculata_contig1600.3486.1 ID=prot_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp
MHELVSTCAKRDRASRTSYGRVWKGLLSSMEEVLRSGRGAQLPHLGTVTY
VTRSQRESSSAGHRGYVFVPNPNFVRAYSIIQLIPPKFALLAPFVPVSSA
RVAHAAEVNHEYARAVIASIVDAIGRRACSGATLRLPFGEIGMLLMKGRT
IRFEFAEGFRRPRMDSRADEYSAHVKRILGNLDARARASTSPRDLESNLT
PPTVRRAPSSHAGRRAIHSKEKVPLTTPVGENQIHHAGDGVSLATKLTHS
TTGDPSPTSRSLGARPTTVGGVTSRREDRSTVASISPALGHDAGLCSSRT
NVVGEPSPCRRRGALPTAPAHGAFVASGTTARGFIEAAGVAVATGTAATV
GSRGSERLKVEEKKSEHSISPRAAKKVLPHFLAIGNSGNQALLVKEGPEI
VQRQAVARFDVKRVAHKDLDEKEDADMRRRQA
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mRNA from alignment at H-paniculata_contig1600:18643..22579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1600.3486.1 ID=mRNA_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3937bp|location=Sequence derived from alignment at H-paniculata_contig1600:18643..22579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGAGTTGGTGTCAACATGCGCCAAGCGTGATCGAGCGAGTCGAAC AAGCTACGGTCGGGTATGGAAGGGATTACTGTCAAGCATGGAGGAGGTTC TCCGTTCGGGTCGAGGGGCACAGCTACCACACGTACGCAGAGAGTTTTAC GGCATACAGCTGGCAGGGCAGCAGTATTTGTGCGCGTAGTCCCCCTCATA CTAAGGGAATCTAACTTTCTTGTGGTAGCAGGAATCACGTACAGCATCGA TACATAAATAGGAGAATTGCCGCATTTTCCCCGTCGCTATGGCGTAGCGC TTTCGGTATCGAGAATCAACCGTTTGCCACCGAAAGAGAAAGTTTGCTAC TACGTCGTAGGCGTAGGATATCGAAGCTGACCCTAACGGGCCTGTTCTTA GTGCACAGCAGTCCACACGTTCCGTCTCTCTCTCAATATATATATATACT GTATAACTTAGGGGAAAGTGTAGTGCAGTACTGCAATAATAAGCGTACGA GGTAAACACTGCAACGCACTGTAGCTCCGTATGTGTTGCTTATCGTGCTG GTTGTTGAACTGTAGTGTGCGCAGTGCATTAACCAGGGTAGAAATATAGA AAATGCGCAGTGAAGTCCAAGCCTGCGAATCCTAGGAAAAAACGACGACG ACTCACAATTATTTTTAGGTTGGTTTCAAAGCTGCCTCTCAATACTATTT TAGAGCAGAGACAACAAAAAAATTAAGGATACATCTTTCTCTGCATACTT CAACGGCGTCTGGCAGCTCGGGACGGTGACCTACGTGACGCGGTCACAGC GCGAAAGCAGCAGCGCTGGGCACAGGGGCTATGTGTTTGTCCCAAACCCC AAGTGAGCTTAAATCCAAGAATTAGGGTGGGTTTGTAACTCACCGCGCAT CCCAACCCTGATAGTTTGGATCGACCTCGATCTGCCGAATACATTGTAGT CATGTTTCAATCGCACTCGAGAGGAGATCGCTGAGAGCGTAGTAACGTGT ACGATTTGACTTCTTAACGTGGGAATTACACTTGGCATTTGGCCAAGGCT GATAGTGTAGAGTAGTCAACAAAGGAAGAACATAGTGCCATCGAAGAGAG ACATTGCGTCATAGTATACCCTCAAGTTCGAGGGGGTCGTCACCATGGCA TAGTGCATCCATGCTATTCACTAGAGAAGGTGGAGGCGACTGAATTTCCA CGATCCCTGCTGCCCGATATACATGAGGTTCCGTTGTCACCATGCACCTC ATTTTGTCTCCAATATTTCTCCGTCTGGCCACGAAAAAATGTTCATTTGT TTCTAACGCACCAGTTTCGTCAGGGCGTACAGCATAATTCAGCTGATTCC TCCAAAATTTGCGCTTTTAGCACCATTCGTGCCTGTTTCGTCGGCCAGAG TCGCACATGCCGCGGAGGTCAACCACGAGTACGCTCGGGCTGTGATTGGT GAGGATGACTATGATTCACTGATGCTTGAAAAGAGGAATTATTCCATAGT TCCTATGGGATCTCTCGCGCCAGGGATTAAGAGAAACGCAGCGCATGGAA GGAGAGGGGCATTGATAGTGAACACCGTTTTTTTTCGGTGCATCCAGATA TGTTTTTAATAATCGATTAGAAAATGCTCATCGAATTGTATTTAAATGTC GGAGGCATTTTGAGCGTTTTCCGAGGCAATTTTGTTGCTTTCAACGTGAT CAGGCGTTCAATCGGTGTCCCTTTTCGTGGCATTCGTTGATTTAAACGAA ACCTCAGTGGCTTCGCCCCAGCAAACATGTTGTCCAAACGAGGGACGGGG CGAATGTTACCTAGCGTCCATGTCATTAAAAACAACGTCGGAGGGCCAAC CATGTTTATATCTCGGTCCCTTGCATTTATTCGAAATTACCGCTTCTCGC TGTGACGTGCTAAAATCTGCAGCTTCGATAGTTGATGCCATCGGAAGACG GGCTTGCTCCGGCGCCACGCTGCGCCTTCCTTTTGGGGAGATTGGCATGC TGTTGATGAAGGGGCGAACGATTAGGTTCGAGTTTGCAGAGGGATTTCGT CGTCCTAGGATGGATTCGCGTGCAGTAGAGGCAAGTGGTGCAGATTGTGT TCCGTGAGAATTGCTGCTCTCCATTGGGTTGGCCGCGTCTCACTGAAAGT CGTAGTCATGCACCCATAAACGTAACATAAAGTTCATGGATTTGATCAGC ATACAATGGATATCCGTGATAGGTAAGCAGTACGGCACAGGGGATACTCC AATTCGAGGCGAGTCGGTTTAATGTGAAAACGATTTACGGCGGGTCAAAC CAGCTTGTCACCGAATCAAATTTTCATAAATTTCCTATATATTACGACTA TTAAAATAAGGCAGTTTTCGGTTCAAGGCGGACGCTTTTGACGTGTCACC ACTCCATCAGGGTATCCACTGTACGTCTGTCTCGGTAGGTGCAAATATAC CGATTGACAGGTAATCTTGGAATCTAGAGAAAGAAGCACCATACACCCCC TCCTTCGTGATCGCAATACGCCCAAACAGGGTGCCGTGGTCTCCCACCCT TTTTGGCATTGCAATTTTACGATCTCCTTTCTTCCTTGCATCCCCCTCTC CGTAGTTTTCCCTTTGTCAGTTTTTCATTCCGTCGTAGACCAATCACAAT GCGCCCCTCGTATTCTTCCCATCCACATATATTTTCCGCATAGGACGAAT ACAGCGCTCATGTGAAACGGATTCTTGGCAATCTCGACGCGAGGGCTAGG GCATCAACTTCCCCGCGAGATCTCGAGTCGAACCTTACGCCGCCAACCGT GAGGAGGGCACCTTCTTCCCATGCTGGACGTCGAGCTATTCATTCAAAAG AGAAAGTCCCACTTACAACACCAGTCGGAGAAAATCAGATTCATCATGCT GGCGATGGGGTATCGTTGGCGACGAAACTGACTCATTCAACCACTGGAGA CCCGAGCCCTACCAGTAGGAGTTTAGGGGCTAGACCTACTACTGTTGGTG GCGTCACAAGCCGTCGGGAGGATCGCTCCACCGTAGCCAGCATATCTCCG GCACTGGGTCATGACGCTGGTCTTTGCAGCAGTCGGACGAACGTCGTTGG TGAGCCATCCCCATGTCGCCGTCGTGGTGCACTTCCTACGGCTCCGGCTC ACGGTGCTTTCGTCGCTTCTGGGACGACGGCCAGGGGGTTCATTGAAGCT GCGGGGGTGGCGGTGGCGACTGGTACGGCGGCGACGGTGGGATCAAGAGG TAGCGAGAGACTTAAAGTGGAGGAGAAGAAATCAGAGCACAGCATATCGC CGAGGGCGGCAAAGAAGGTTCTTCCTCATTTCTTGGCGATAGGGAATTCG GGAAATCAGGCGCTCCTCGTGAAGGAAGGACCCGAGATCGTACAACGGCA GGTGATTTTTCTCCGGTCAGATTAGAGCTAGCTCCGTGAGGAATCGTACA CCACGCGTCTCTAGGATCAGTGCATAGGTCCATCCGTAGATTTTTGCAGA TACCACACACATGGGGCACGCGAAACTCCAGCAGGTCTGTGCAAGAAAAG TAAGTCATATTTTGGAAAATGCTGCTCAACAAGCAGGGGCCCGATCTCCA CCGACACCCGACACTGCCCGCGAGCGTTGGTCTTCGGTTCTCCCAATTTA ATTCACTTGCAACCGCACCACTTACTAACCTCACGTTACCGTCTTGTTGT CGCTGGTAACCCTACCCGAGTACCAGCGTCATGAAAATGACAATCAGCAC GTACATAACACTTCGTGATTCTTCAAGTGCTGTGTCAGTGAAGCAGTTGC ATCTCTCGACCTCCGCAAATCAACTGCCTTTATCTCTTCTGGCCCCATAA CAGGCTGTGGCTCGTTTCGACGTAAAGAGAGTAGCACATAAGGACCTCGA TGAAAAGGAGGACGCTGACATGCGCAGACGGCAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1600:18643..22579+

>mRNA_H-paniculata_contig1600.3486.1 ID=mRNA_H-paniculata_contig1600.3486.1|Name=mRNA_H-paniculata_contig1600.3486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig1600:18643..22579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGAGTTGGTGTCAACATGCGCCAAGCGTGATCGAGCGAGTCGAAC
AAGCTACGGTCGGGTATGGAAGGGATTACTGTCAAGCATGGAGGAGGTTC
TCCGTTCGGGTCGAGGGGCACAGCTACCACACATGCACGAGTTGGTGTCA
ACATGCGCCAAGCGTGATCGAGCGAGTCGAACAAGCTACGGTCGGGTATG
GAAGGGATTACTGTCAAGCATGGAGGAGGTTCTCCGTTCGGGTCGAGGGG
CACAGCTACCACACCTCGGGACGGTGACCTACGTGACGCGGTCACAGCGC
GAAAGCAGCAGCGCTGGGCACAGGGGCTATGTGTTTGTCCCAAACCCCAA
CTCGGGACGGTGACCTACGTGACGCGGTCACAGCGCGAAAGCAGCAGCGC
TGGGCACAGGGGCTATGTGTTTGTCCCAAACCCCAATTTCGTCAGGGCGT
ACAGCATAATTCAGCTGATTCCTCCAAAATTTGCGCTTTTAGCACCATTC
GTGCCTGTTTCGTCGGCCAGAGTCGCACATGCCGCGGAGGTCAACCACGA
GTACGCTCGGGCTGTGATTGTTTCGTCAGGGCGTACAGCATAATTCAGCT
GATTCCTCCAAAATTTGCGCTTTTAGCACCATTCGTGCCTGTTTCGTCGG
CCAGAGTCGCACATGCCGCGGAGGTCAACCACGAGTACGCTCGGGCTGTG
ATTGCTTCGATAGTTGATGCCATCGGAAGACGGGCTTGCTCCGGCGCCAC
GCTGCGCCTTCCTTTTGGGGAGATTGGCATGCTGTTGATGAAGGGGCGAA
CGATTAGGTTCGAGTTTGCAGAGGGATTTCGTCGTCCTAGGATGGATTCG
CGTGCACTTCGATAGTTGATGCCATCGGAAGACGGGCTTGCTCCGGCGCC
ACGCTGCGCCTTCCTTTTGGGGAGATTGGCATGCTGTTGATGAAGGGGCG
AACGATTAGGTTCGAGTTTGCAGAGGGATTTCGTCGTCCTAGGATGGATT
CGCGTGCAGACGAATACAGCGCTCATGTGAAACGGATTCTTGGCAATCTC
GACGCGAGGGCTAGGGCATCAACTTCCCCGCGAGATCTCGAGTCGAACCT
TACGCCGCCAACCGTGAGGAGGGCACCTTCTTCCCATGCTGGACGTCGAG
CTATTCATTCAAAAGAGAAAGTCCCACTTACAACACCAGTCGGAGAAAAT
CAGATTCATCATGCTGGCGATGGGGTATCGTTGGCGACGAAACTGACTCA
TTCAACCACTGGAGACCCGAGCCCTACCAGTAGGAGTTTAGGGGCTAGAC
CTACTACTGTTGGTGGCGTCACAAGCCGTCGGGAGGATCGCTCCACCGTA
GCCAGCATATCTCCGGCACTGGGTCATGACGCTGGTCTTTGCAGCAGTCG
GACGAACGTCGTTGGTGAGCCATCCCCATGTCGCCGTCGTGGTGCACTTC
CTACGGCTCCGGCTCACGGTGCTTTCGTCGCTTCTGGGACGACGGCCAGG
GGGTTCATTGAAGCTGCGGGGGTGGCGGTGGCGACTGGTACGGCGGCGAC
GGTGGGATCAAGAGGTAGCGAGAGACTTAAAGTGGAGGAGAAGAAATCAG
AGCACAGCATATCGCCGAGGGCGGCAAAGAAGGTTCTTCCTCATTTCTTG
GCGATAGGGAATTCGGGAAATCAGGCGCTCCTCGTGAAGGAAGGACCCGA
GATCGTACAACGGCAGGACGAATACAGCGCTCATGTGAAACGGATTCTTG
GCAATCTCGACGCGAGGGCTAGGGCATCAACTTCCCCGCGAGATCTCGAG
TCGAACCTTACGCCGCCAACCGTGAGGAGGGCACCTTCTTCCCATGCTGG
ACGTCGAGCTATTCATTCAAAAGAGAAAGTCCCACTTACAACACCAGTCG
GAGAAAATCAGATTCATCATGCTGGCGATGGGGTATCGTTGGCGACGAAA
CTGACTCATTCAACCACTGGAGACCCGAGCCCTACCAGTAGGAGTTTAGG
GGCTAGACCTACTACTGTTGGTGGCGTCACAAGCCGTCGGGAGGATCGCT
CCACCGTAGCCAGCATATCTCCGGCACTGGGTCATGACGCTGGTCTTTGC
AGCAGTCGGACGAACGTCGTTGGTGAGCCATCCCCATGTCGCCGTCGTGG
TGCACTTCCTACGGCTCCGGCTCACGGTGCTTTCGTCGCTTCTGGGACGA
CGGCCAGGGGGTTCATTGAAGCTGCGGGGGTGGCGGTGGCGACTGGTACG
GCGGCGACGGTGGGATCAAGAGGTAGCGAGAGACTTAAAGTGGAGGAGAA
GAAATCAGAGCACAGCATATCGCCGAGGGCGGCAAAGAAGGTTCTTCCTC
ATTTCTTGGCGATAGGGAATTCGGGAAATCAGGCGCTCCTCGTGAAGGAA
GGACCCGAGATCGTACAACGGCAGGCTGTGGCTCGTTTCGACGTAAAGAG
AGTAGCACATAAGGACCTCGATGAAAAGGAGGACGCTGACATGCGCAGAC
GGCAGGCGGCTGTGGCTCGTTTCGACGTAAAGAGAGTAGCACATAAGGAC
CTCGATGAAAAGGAGGACGCTGACATGCGCAGACGGCAGGCG
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