mRNA_H-paniculata_contig15935.3439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15935.3439.1
Unique NamemRNA_H-paniculata_contig15935.3439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5K9W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W3_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 9.330e-36
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    7 VSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            +SDE  AE LWQV+  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKKYNV+LLRK
Sbjct:    1 MSDEQTAEFLWQVKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRK 84
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.000e-34
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   16 ETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRKLK 264
            E  AEMLWQ +R TGDYHDA+TDKMFM+WLE RL PAFK  + NKKMILVLDNASYHHGYD EVGVPE+ SK YN  LLRK K
Sbjct:  352 EETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYK 434
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5JRA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.550e-34
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            F++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVL+NASYHH +D EV VPET SKKYNV+LLRK
Sbjct:   75 FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDPQFKNKKMFLVLNNASYHHCFDEEVKVPETNSKKYNVELLRK 160
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.560e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            F++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKKYNV+LLRK
Sbjct:  192 FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRK 277
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5K2A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.930e-33
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    4 KVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            ++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKK NVDLLRK
Sbjct:   54 EMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKNNVDLLRK 138
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.410e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            F++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKKYNV+LLRK
Sbjct:  274 FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRK 359
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.790e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            F++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKKYNV+LLRK
Sbjct:  230 FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRK 315
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5K658_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K658_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.590e-33
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRKLKSSLLQ 279
            F+ SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKK+ LVLD+ASYHH +D E+ VPET SKKYNV+LLRK   +L +
Sbjct:  140 FERSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKIFLVLDSASYHHCFDEELKVPETNSKKYNVELLRKYGCTLFK 232
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.250e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FKVSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLRK 258
            F++SDE  AE LWQ +  TGDYH+A+TD MFM WL+HRL PAF   F NKKM LVLDNASYHH +D EV VPET SKKYNV+LLRK
Sbjct:  351 FEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRK 436
[Close]
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.960e-32
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    7 VSDETAAEMLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKI--FPNKKMILVLDNASYHHGYDPEVGVPETKSKKYNVDLLR 255
            + DE  AE LWQ +   GDYH A+TD MFM+WLEHRL PA+  I  F  K+MILVLDNASYHHG+D EV VPET +KK+NVDLLR
Sbjct:    1 MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLR 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15935.3439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9W3_9PHAE9.330e-3671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ25_ECTSI1.000e-3475.90Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5JRA8_9PHAE2.550e-3468.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LE74_9PHAE2.560e-3369.77Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2A0_9PHAE2.930e-3369.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE3.410e-3369.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE3.790e-3369.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K658_9PHAE5.590e-3362.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX2_9PHAE8.250e-3369.77Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEG4_9PHAE2.960e-3265.88DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15935contigH-paniculata_contig15935:5250..5552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.1991234-UTR-H-paniculata_contig15935:5249..52791622929273.1991234-UTR-H-paniculata_contig15935:5249..5279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15935 5250..5279 +
1691480795.8134964-UTR-H-paniculata_contig15935:5249..52791691480795.8134964-UTR-H-paniculata_contig15935:5249..5279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15935 5250..5279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.2163994-CDS-H-paniculata_contig15935:5279..55521622929273.2163994-CDS-H-paniculata_contig15935:5279..5552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15935 5280..5552 +
1691480795.8235266-CDS-H-paniculata_contig15935:5279..55521691480795.8235266-CDS-H-paniculata_contig15935:5279..5552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15935 5280..5552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15935.3439.1prot_H-paniculata_contig15935.3439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15935 5280..5552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15935.3439.1

>prot_H-paniculata_contig15935.3439.1 ID=prot_H-paniculata_contig15935.3439.1|Name=mRNA_H-paniculata_contig15935.3439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MLWQVRRTTGDYHDALTDKMFMDWLEHRLKPAFKKIFPNKKMILVLDNAS
YHHGYDPEVGVPETKSKKYNVDLLRKLKSSLLQSPVRSCA*
back to top

mRNA from alignment at H-paniculata_contig15935:5250..5552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15935.3439.1 ID=mRNA_H-paniculata_contig15935.3439.1|Name=mRNA_H-paniculata_contig15935.3439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig15935:5250..5552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAAGTCAGTGATGAAACGGCAGCAGAGATGCTTTGGCAGGTCAGGAG
AACGACGGGGGATTACCATGATGCCCTGACTGACAAAATGTTCATGGACT
GGCTTGAGCACCGCCTCAAGCCAGCTTTTAAGAAGATATTCCCAAACAAA
AAGATGATTCTCGTTCTGGACAACGCGTCATATCACCATGGGTACGACCC
CGAAGTTGGGGTGCCAGAAACCAAAAGCAAGAAATACAACGTCGACCTGT
TACGCAAGTTAAAGTCAAGTCTACTGCAGTCCCCCGTAAGATCTTGTGCG
TAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15935:5250..5552+

>mRNA_H-paniculata_contig15935.3439.1 ID=mRNA_H-paniculata_contig15935.3439.1|Name=mRNA_H-paniculata_contig15935.3439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig15935:5250..5552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTGGCAGGTCAGGAGAACGACGGGGGATTACCATGATGCCCTGAC
TGACAAAATGTTCATGGACTGGCTTGAGCACCGCCTCAAGCCAGCTTTTA
AGAAGATATTCCCAAACAAAAAGATGATTCTCGTTCTGGACAACGCGTCA
TATCACCATGGGTACGACCCCGAAGTTGGGGTGCCAGAAACCAAAAGCAA
GAAATACAACGTCGACCTGTTACGCAAGTTAAAGTCAAGTCTACTGCAGT
CCCCCGTAAGATCTTGTGCGTAAATGCTTTGGCAGGTCAGGAGAACGACG
GGGGATTACCATGATGCCCTGACTGACAAAATGTTCATGGACTGGCTTGA
GCACCGCCTCAAGCCAGCTTTTAAGAAGATATTCCCAAACAAAAAGATGA
TTCTCGTTCTGGACAACGCGTCATATCACCATGGGTACGACCCCGAAGTT
GGGGTGCCAGAAACCAAAAGCAAGAAATACAACGTCGACCTGTTACGCAA
GTTAAAGTCAAGTCTACTGCAGTCCCCCGTAAGATCTTGTGCGTAA
back to top