mRNA_H-paniculata_contig15933.3438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15933.3438.1
Unique NamemRNA_H-paniculata_contig15933.3438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 4.390e-101
Identity = 141/179 (78.77%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKNGLG 537
            YGQTETTAG+TMT S DFS GHVGGPFSCTEICLKDVPEMGY HTD+WHGGDPR+  G G  C GRGEICFRG NVF+GYYK+++KTREAFDE+GWL+SGDIG+W +DGALKI+DRKKNIFKLSQGEYVAPEK+E +H QSPLVAQS+VHGDSL+SSLVA+IVPD +A A WA  NG G
Sbjct:  393 YGQTETTAGSTMTQSGDFSVGHVGGPFSCTEICLKDVPEMGYRHTDTWHGGDPRDAGGGGEACEGRGEICFRGCNVFVGYYKDDEKTREAFDENGWLMSGDIGMWNLDGALKIIDRKKNIFKLSQGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSSLVAIIVPDPDAAAGWADANGCG 571
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 304 bits (779), Expect = 5.510e-97
Identity = 140/172 (81.40%), Postives = 154/172 (89.53%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASW 516
            YGQTET AGAT+TM  DFSAGHVGGPF CTEICL DVPEMGYLHTDSWHGGDPREG G G PC+GRGEICFRG+NVF GYYK+ +KT EA D DGWL SGDIGLWT DGAL+I+DRKKNIFKLSQGEY+APEKIE VH QSPLVAQSFV+GDSL+S+LVAV+VPDA+AV +W
Sbjct:  436 YGQTETCAGATITMPGDFSAGHVGGPFPCTEICLMDVPEMGYLHTDSWHGGDPREGGGGGEPCAGRGEICFRGTNVFAGYYKDPEKTAEAIDADGWLHSGDIGLWTADGALRIIDRKKNIFKLSQGEYIAPEKIENVHVQSPLVAQSFVYGDSLRSALVAVVVPDADAVVAW 607
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A7S3Y2U0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2U0_HETAK)

HSP 1 Score: 233 bits (595), Expect = 6.030e-73
Identity = 111/178 (62.36%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKNGL 534
            YGQTE+T  AT+       AG+VGGP    EI L+ VP+MGYLHTD+ HG D      RG PC GRGEIC RG NVFMGYYK+E KT+E  D DGWL +GDIG+W  +GALKIVDRKKN+FKL+QGEYVAPEK+E ++ +S LV Q FV+GDSLQ+SLVAV+VPD + +A+WA+  GL
Sbjct:  137 YGQTESTGAATLQAMYTTDAGNVGGPIVSCEIALQSVPDMGYLHTDAAHGED------RGTPCEGRGEICLRGHNVFMGYYKDEKKTKETIDADGWLHTGDIGIWLPNGALKIVDRKKNLFKLAQGEYVAPEKLENIYGKSSLVGQVFVYGDSLQASLVAVVVPDEQGLAAWAQAKGL 308
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A7S1V9E3_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9E3_9STRA)

HSP 1 Score: 231 bits (589), Expect = 3.190e-70
Identity = 116/177 (65.54%), Postives = 130/177 (73.45%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDF-SAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKN 528
            YGQTE  A  T++  +DF S GHVGGP   TE+ L DVPEMGYLHTD+ H         RG PC GRGEI  RG NVF GYYK+E KT+E  DEDGWL SGDIGLWTM G L+I+DRKKNIFKLSQGEYVAPEKIE +   SPL+ Q+FV+GDS Q  LVAVIVPD E VA+WA K 
Sbjct:  301 YGQTEGCAAGTISHPDDFASVGHVGGPTGATEVMLVDVPEMGYLHTDTDH---------RGQPCQGRGEIWIRGPNVFKGYYKDEVKTKETLDEDGWLKSGDIGLWTMSGCLQIIDRKKNIFKLSQGEYVAPEKIENILIGSPLIGQAFVYGDSFQHCLVAVIVPDEEPVAAWATKQ 468
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A7S2SDD9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDD9_9STRA)

HSP 1 Score: 228 bits (580), Expect = 6.830e-68
Identity = 112/171 (65.50%), Postives = 127/171 (74.27%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVAS 513
            YGQTE  A AT+T   DFS+GHVG P  C EI L DVP+MGY HTD+WHGGD       G+PC GRGEI +RG   F GYYK  +KT E  D+DGWL SGDIGLWT+ G LKI+DRKKNIFKL+QGEYVA EKIE V   SPL+ Q+FV+GDSLQS LVAVIVPD E  A+
Sbjct:  413 YGQTEGCAAATITAPGDFSSGHVGPPVPCVEIKLIDVPDMGYRHTDTWHGGDQD-----GMPCVGRGEIVYRGPVAFTGYYKMPEKTAETIDKDGWLYSGDIGLWTLSGNLKIIDRKKNIFKLAQGEYVAAEKIENVLTTSPLIGQAFVYGDSLQSYLVAVIVPDEETAAA 578
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: B8CBL9_THAPS (Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL9_THAPS)

HSP 1 Score: 226 bits (577), Expect = 1.840e-67
Identity = 112/177 (63.28%), Postives = 130/177 (73.45%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDF-SAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKN 528
            YGQTE  A AT++  +D  S GHVGGP  C EI L+DVPEMGYL TD+ H G+P         C GRGEIC RG NVF GYYK+E+KT+E  DE+GWL SGD+GLW  DG LKI+DRKKNIFKL+QGEYVA EKIE V  QS L+ Q FVHGDS Q+ LVAVIVPD + V +WA+ N
Sbjct:  419 YGQTEGAAAATISHPDDIASVGHVGGPTDCVEIVLEDVPEMGYLSTDTSHNGEP---------CRGRGEICIRGPNVFKGYYKDEEKTKETIDEEGWLHSGDVGLWMPDGQLKIIDRKKNIFKLAQGEYVAAEKIENVLLQSLLIGQIFVHGDSFQTYLVAVIVPDEDPVRAWARDN 586
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A812REE4_9DINO (LACS7 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812REE4_9DINO)

HSP 1 Score: 220 bits (560), Expect = 1.540e-66
Identity = 104/177 (58.76%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKNG 531
            YG +ET AG T+T   D   G VG   +C EI LKDVP+MGYL TD  H     +   + IPC GRGEIC +G N+F GYYK  DKT EA D DGW  SGDIG+WT DG LKI+DRKKNIFKL+QGEYVAPEK+E ++ QS  +AQSFV+GDSL++ LV+++VPD E   +WAK++G
Sbjct:  228 YGLSETAAGGTITADQDMMPGTVGAVTACNEIRLKDVPDMGYLRTDQVH-----KIGSKTIPCCGRGEICLKGLNIFQGYYKMPDKTAEAIDADGWFHSGDIGMWTPDGRLKIIDRKKNIFKLAQGEYVAPEKLENLNVQSKFIAQSFVYGDSLKTQLVSIVVPDPEVAKAWAKESG 399
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: W7TAS6_9STRA (Long-chain-fatty-acid--CoA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAS6_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.790e-66
Identity = 109/181 (60.22%), Postives = 132/181 (72.93%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGI---PCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKNGL 534
            YGQTETTA  ++T   D++ GHVGG    +E+ L DVPEMGYLHTD  HG   R G   G    PC GRGEIC RG ++F GYYK+ DKT E  D  GWL SGD+G+WT +G L I+DRKKNIFKL+QGEYVA EKIE V  QS ++AQ+FV+GDSL+S LVA++VPDAEAV  WA++  L
Sbjct:  418 YGQTETTAMTSLTFPGDWTTGHVGGVAPVSEVRLVDVPEMGYLHTDRQHGSAGRGGGAFGKAAQPCIGRGEICVRGPHIFKGYYKQPDKTAETIDAQGWLHSGDVGMWTPEGRLVIIDRKKNIFKLAQGEYVAAEKIENVLMQSEMIAQAFVYGDSLKSELVAIVVPDAEAVQDWARQESL 598
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A7S2UI66_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI66_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.050e-66
Identity = 111/177 (62.71%), Postives = 129/177 (72.88%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDF-SAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKN 528
            YGQTE TAGAT+    D  S GHVGGP  CTE+ L DVPEMGYLHTD  H         R  PC GRGEI  RG NVF GYYKE +KT+EA DE+GWL SGDIGLWT+ G L+I+DRKK IFKL+QGEYV+ EK+E +  +SPL  Q FV+GDSLQS+LVA++VPD E V SWA  +
Sbjct:  419 YGQTEGTAGATVGHIEDMGSNGHVGGPTPCTEVVLLDVPEMGYLHTDRMH---------RDQPCRGRGEILIRGPNVFAGYYKEPEKTKEAIDEEGWLHSGDIGLWTLQGQLQIIDRKKEIFKLAQGEYVSAEKVENIVIRSPLFGQCFVYGDSLQSALVAIVVPDEEPVRSWAANH 586
[Close]
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Match: A0A7S2MGH8_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MGH8_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.080e-66
Identity = 110/177 (62.15%), Postives = 129/177 (72.88%), Query Frame = 1 
Query:    1 YGQTETTAGATMTMSNDF-SAGHVGGPFSCTEICLKDVPEMGYLHTDSWHGGDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSGDIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVHGDSLQSSLVAVIVPDAEAVASWAKKN 528
            YGQTE TA AT++  +D  S GHVGGP +  EI L DVPEMGYLHTD+ H         +G PC GRGEIC RG NVF GYYK+E+KTRE  DE+GWL SGD+GLWT DG L+I+DRKKNIFKL+ GEYVA EKIE +  QS L+ Q FVHGDS Q++LV +IVPD E V  WA + 
Sbjct:  420 YGQTEGTAAATISHPDDMTSVGHVGGPTNVVEIVLIDVPEMGYLHTDTSH---------QGKPCRGRGEICIRGPNVFKGYYKDEEKTRETIDEEGWLHSGDVGLWTPDGQLRIIDRKKNIFKLANGEYVAAEKIENILMQSLLIGQCFVHGDSYQTALVGIIVPDEEVVRGWATEK 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15933.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI4.390e-10178.77Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A835ZFW5_9STRA5.510e-9781.40Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A7S3Y2U0_HETAK6.030e-7362.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1V9E3_9STRA3.190e-7065.54Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammato... [more]
A0A7S2SDD9_9STRA6.830e-6865.50Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizochr... [more]
B8CBL9_THAPS1.840e-6763.28Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassi... [more]
A0A812REE4_9DINO1.540e-6658.76LACS7 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
W7TAS6_9STRA1.790e-6660.22Long-chain-fatty-acid--CoA ligase n=2 Tax=Monodops... [more]
A0A7S2UI66_9STRA2.050e-6662.71Long-chain-fatty-acid--CoA ligase n=1 Tax=Attheya ... [more]
A0A7S2MGH8_9STRA2.080e-6662.15Long-chain-fatty-acid--CoA ligase n=1 Tax=Helicoth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15933contigH-paniculata_contig15933:252..5338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue5.9e-57
Seed eggNOG ortholog35128.Thaps29867
Preferred nameACSL6
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001101,GO:0001666,GO:0001676,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0003987,GO:0004467,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007405,GO:0007584,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009628,GO:0009629,GO:0009651,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010193,GO:0010243,GO:0010562,GO:0010565,GO:0010604,GO:0010646,GO:0010720,GO:0010746,GO:0010747,GO:0010866,GO:0010867,GO:0010876,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015645,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016053,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019221,GO:0019222,GO:0019432,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019867,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0030154,GO:0030182,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031667,GO:0031903,GO:0031956,GO:0031957,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0032000,GO:0032268,GO:0032270,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032890,GO:0032892,GO:0033036,GO:0033211,GO:0033559,GO:0033674,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034201,GO:0034284,GO:0034285,GO:0034641,GO:0034654,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0036109,GO:0036293,GO:0036314,GO:0042175,GO:0042178,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0042981,GO:0043067,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043270,GO:0043434,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0043651,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044539,GO:0045017,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045834,GO:0045859,GO:0045860,GO:0045923,GO:0045937,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046677,GO:0046889,GO:0046890,GO:0046942,GO:0046949,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051960,GO:0051962,GO:0055086,GO:0060255,GO:0060284,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070542,GO:0070723,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071466,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072330,GO:0072521,GO:0072522,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097305,GO:0098588,GO:0098805,GO:0098827,GO:0120035,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903793,GO:1903959,GO:1903961,GO:1905952,GO:1905954,GO:2000026,GO:2000191,GO:2000193,GO:2001233,GO:2001236
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs2XERM@2836,COG1022@1,KOG1256@2759
Ec32 ortholog descriptionlong chain acyl-coA synthetase
Ec32 orthologEc-01_001560.1
EC6.2.1.3
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons4
Model size540
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15933.3438.1prot_H-paniculata_contig15933.3438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15933 252..5338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.0955703-CDS-H-paniculata_contig15933:251..4551622929273.0955703-CDS-H-paniculata_contig15933:251..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 252..455 +
1691480795.769285-CDS-H-paniculata_contig15933:251..4551691480795.769285-CDS-H-paniculata_contig15933:251..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 252..455 +
1622929273.1148694-CDS-H-paniculata_contig15933:2937..30761622929273.1148694-CDS-H-paniculata_contig15933:2937..3076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 2938..3076 +
1691480795.7798254-CDS-H-paniculata_contig15933:2937..30761691480795.7798254-CDS-H-paniculata_contig15933:2937..3076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 2938..3076 +
1622929273.128412-CDS-H-paniculata_contig15933:3671..37031622929273.128412-CDS-H-paniculata_contig15933:3671..3703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 3672..3703 +
1691480795.7873466-CDS-H-paniculata_contig15933:3671..37031691480795.7873466-CDS-H-paniculata_contig15933:3671..3703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 3672..3703 +
1622929273.143462-CDS-H-paniculata_contig15933:5173..53381622929273.143462-CDS-H-paniculata_contig15933:5173..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 5174..5338 +
1691480795.799056-CDS-H-paniculata_contig15933:5173..53381691480795.799056-CDS-H-paniculata_contig15933:5173..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15933 5174..5338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15933.3438.1

>prot_H-paniculata_contig15933.3438.1 ID=prot_H-paniculata_contig15933.3438.1|Name=mRNA_H-paniculata_contig15933.3438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
YGQTETTAGATMTMSNDFSAGHVGGPFSCTEICLKDVPEMGYLHTDSWHG
GDPREGDGRGIPCSGRGEICFRGSNVFMGYYKEEDKTREAFDEDGWLLSG
DIGLWTMDGALKIVDRKKNIFKLSQGEYVAPEKIETVHAQSPLVAQSFVH
GDSLQSSLVAVIVPDAEAVASWAKKNGLG*
back to top

mRNA from alignment at H-paniculata_contig15933:252..5338+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15933.3438.1 ID=mRNA_H-paniculata_contig15933.3438.1|Name=mRNA_H-paniculata_contig15933.3438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5087bp|location=Sequence derived from alignment at H-paniculata_contig15933:252..5338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGACAGACAGAGACGACGGCAGGCGCGACCATGACCATGAGTAATGA
TTTCTCCGCGGGGCACGTCGGCGGTCCGTTCAGCTGTACGGAAATCTGCC
TCAAAGATGTCCCGGAGATGGGCTATCTCCATACCGACAGTTGGCATGGA
GGGGACCCGCGAGAGGGTGATGGAAGAGGCATCCCGTGCTCTGGTCGAGG
GGAGGTGGGATATTTTTTTCGTGTTTAAGAATCGCGCATTAACGAATTTT
AAGGAATAATCAAACTAAGAAAAATCATCAAGAAAACGTTTGGATCAGTA
AAAGTAACTTCTTCAGGGACTTGACAAAACCCGGAAATTCGGGAATTTGG
GATGGAGTGCAAGGAGAGCCTGAAATTCCCGGATTTTGAAATATATCCAA
GCGGGTCGGTTTTTGTTGATATAATCCAAATTTCCGTTCGACCAACAACC
CTGTTTAGAATTTGGAATTTGGATTTCTGTATATTTTTACTCTTGTTTTT
ACGGGATTTTTTATTTTTCCAGGTTTCCGCCGTGACCTTGCTCGCTAGTA
GTGGTGAGTGAGCCTTTAGTCTCTATGGTTGGCCAGTGGGTACGCATACG
GCTACTCTCGAGGAAGGATGGTCGTACATTTGCACACTGATCAATCACAG
AGGGGCTATGAAGTAAACAGTTTCAAGTTTTTTTTGTTTTTTTTTGGTTC
ATGCACAGTACGTAACGGTCTTACCGGCCAGTGTAAACAATCAGCATGAA
TATAATATATGTAAATGATGTATATCCCATGGCTGAAGATTTGGAGTCAT
GCATTATAGACAATTGTACTACGGAGTCGGTATCTGTCTCTTAAGACGTG
TCTTGTCGAGATGGAGTAATCTTGATACCCGAGCTTGAATGTTTTTTTCG
GGTCAGGGAATCAGCCAATTATAGGCCCCAGACGCAGGATGGAGTCTCCG
TAGAAACTGTTTCATAAGGATTTTTTTTTGGTGTGATGCTAGTTAATTTC
AGTTAATTATTGAAGTGACGAGGTTTTTCGATCTTGGCGCGATTGTGTGA
TGACGACGCCTGCATCTATCAAACTTGGACACTGTTGTTCTGGGAGCTTC
AGAGCTTCCAATCGAACCAACCTTGTACAACATTAAGTATTTCCAAGAAA
TACACTACCCGCAAACTATCCCTTACAATGTGTCATGCTCGAGACCGTAC
GTGGCAGTACACAATTTTCGGTCAGCGATATTCCAACATGGTTACATGAA
TGTCGATAAGACACGGCCTCAACGAAGAGGTTGTTGGCCTTGGGCAGGGG
CTCAATCAAGTGAACCTCAAAATGGATTTGGCGGCAATGTACAACATTCA
TGCATGTTTTAAAATCGCGAAAGAGGACAACAGGGCCGAAGGCATGAGGT
GCTTTTGATCTTTTTTGTTCGGGTTCTAGGCTAGTCGTGTCTGTCGTCCA
ATTCCGACAGTTTTCGTGCGCTGTATGTGTACATGTAAATCGTCCCCACT
AGATTTTGTTTGCCTTGATGTCCCCTCGGCTATATATGTATCCTACATAA
TATTCATATATATATATATTTTTTTTTTCGGTACTTCCGTTGCCTTTTCG
TGAGCCGGTAGTTTTTTTTCCCACGTGTTTGCCCACAGCGAGATCTGGTG
ATCTGTTTTGATCTACATTGATCTACTATACTCGGTATGCAAACATGAAT
ATATTGTCTAACAGCGCAGGAAAAATTCACACTCTATAATAATAGCACTG
AATTATCTTCGTTGCACGCAATATTTCTGCGTTCCACCAAGTTTTTTCAT
GTTTTTATTTTTTATTTTTTTCCGTCCCCTTTTATAGTCTCGATGTTTTT
GTATTATATTAGTTTTTGTGTGCTATGTTTATCTTCATATTTTTTCATGT
TGGTTTTGTCCTTTCAATGGCTTGCTTCCTCGATATAGAATCAGGGTAGG
CGAGGTTTGTTGTCTTGTTCTCCGGGCAATGTAAAGGGCATGTCGAGCTG
AGTTAAGCCGCCGTGACCCTGGAGGAGCCCACGACCAGCTAGTCAGCTCT
GTGCAGGGCCTATTTGCTTACTCTTTGACCGTTGCGAAACTTGATAAATA
AGACCGATGTTTGTCCGTTCTCGCTTTAGAGAGTGAGGCTCCCATCGGTA
AACAAACGACCCCCCCCATTGTAGAAGTTAATACGCTGTTTTAGCCACGT
GTTCAGAGCTGGTCCACAGGTTGTGTATTTCGAGGTCTTCGTCGTTGTCC
CCGATTTGGCCGTATATAATGGTTGGTCAGGAGGTCCCCCGTTCCCAATG
GGTTGACATATCTGTCTCCTTTCATGTGACCGCGTTGAATGGGAGGACTC
AGTGTAGCTTTATCCGATGTCATAATCCACAGTGTTTTGGAATTTTATCA
GGCATTTCGCTTGAGTCTTGTTTTTCGCACGAACGTGTTGTCAACCGGTG
CGCAGATTTTTATGTGTGAGATTTTCTTGTTTTTTCGGCTGTCCGGTTCG
CGGTTCGCGGATGGATACGGGAAATGTTTGGTCTGTCGTCGTGTTTGCGG
ATGGATCCCGTTAGACGTTTTCTTGTCCGGTTTGACGGTCATGCGATGAA
GAAACACTATAGTGTATAATTAATTGCCTCCCGGGTACGTATTTGATGTA
TTTTGTTCATTTCGTCGTTGTAATCTTCTCGTTAAGATCTGTTTCAGGGG
TTCGAACGTGTTTATGGGGTATTACAAGGAAGAGGACAAGACGAGAGAGG
CCTTCGATGAGGATGGTTGGCTTCTGTCGGGGGACATCGGGCTGTGGACC
ATGGACGGTGCTCTCAAGATCGTCGGTAGGTTTATTTGCTTGGTACCGTC
ATGCTCCAGAATGTTGTTGTTCCCTTACGTTGCTTTACTTGGCCAAACTG
TGGAGGATATACTAAAGAGAGAGGGATAGGGACGCATCGCATTCCCGTCA
GTGCCTGTAGAGGACAAGCCCCTCTCTTGTCTGTAATTAGCGTACTCTCC
ACAAGAAATGTACCATCTTATTGAGATTTTAAAGAAAGAAATGACATTCT
GTTCGATTTTTGTCGTGAACCCCCACAAAGACAGAGCCGAGGACCCGGTA
AAATAAAGACGTCAATTTCTTGGGTGTCCCTTTCTCGCCACGAGCACAAC
CAATGCCGATTTTTTCCAACGCTAATCCGTTCTCTGATTTGAGCCCGAAA
GGCGTGCTCTGCACGCGTCAGGACTGCTCAGGAACGTTCTGGTAAATCTC
TACACCTGGTGATGGTTTTCGGGCAAGTGGTTGACTGTACTGATTATGTT
ACGCTTCGTGAATCGTTGACGTTTGCTGCTCATGACGCTGTTTGTTTACC
CGCGGTGGTGTGGCTGGATGGATACGATTTGGATGTATGCTTGCTTGGTG
ATGCGGTGGTTATGATCCAGACCGCAAGAAGAACATCTTCAAGCTGTCTC
AGGTACGTTAAGTATCCGTAGGGGTGTACTGTCCGTAGAGCAGTTTCTAC
AGGGTGTATATTTTTATTCAGTTGAGAATACAAACATGAATTAAGTCAAG
GTTTTTTTGTTTTGTTTATGGCATAGAGCTAGATAGATGCAAGAGCTCCA
TGTATTTCAAGTATTCGGATCAAGCTCGATCTGTTGTTACCATTCAGAGT
AGAACGAGACCTATTTTTCACGTCTTGCAGGGTACCCACTGTGGGGACAA
GGGTCGCGTGTGTCACCACCCTGCGAAGGTGGTGGTAATGAAAACATATT
TTTCAGCAACGATTCCTGTTTGTCGAAAACGAGCATGGCGTCGTAAAAGC
TCGTCGCGATCTACTCTATGTGTGTTGTCAGGTAGGAGGATGCTTTTCGA
CGGAGTCATTAGATAGAGGTTTCGATCCTCGAGAATATCGAGCTGGAGAA
AAGTTGAAGCTCTCATCGCCCGGGGGGGTTCAATTGCATACTTCCTAAGG
TTTTTGGAGTGGGGTTCTGCCATGATATTCTCATTGTTTCTTGTGTCTTT
TTCGCTCGTGCCAGTTCTGTATCTCATGCCGTTGTCTGCTCTAGACGTAA
TGAATTGTATTGTAGCTTTTCCCTCTGTAACACAGATATTTTCGGACCAT
GAGTCCGGGTGGCCATTGACCCCTGCGGTCCTTCGGAGTATATATATATA
TTTTTTTCCAAGGCCTGAAGGTCACCTTCACGAGTCAATGCCTACTCTTT
TCAATCAAAGGCTGTATAGATATGTATGTATACATATGTACATGCTGTCC
AGTCAACCACTGGTCTTTTTCAGAGGGGGGCGAAGTCGAACAACCTACAG
AATCAGCTCTTTTTGGCATTGTCCAGTATCCAACACGCCATGTTACATTG
AAATAAAACATGCCCCAAGTAGAACGGATCCCAGAAAAGAGATCCGCGAG
GTGTGATGCCGCTCCCCGAGGGTTGGATGGCCCGATCAATGCGTTGGACC
AGACAAGAGTGCGTATGATACCTAGTCAGTCGGCACTGGTCAAAGCTTAT
TTCGTTGCCTGAGATTTCAGTGCCTACTGTTGTCATTTTCGGGGGGAGAG
GCAGCGCGAAATGCCAGAGCAGGGAGCGAAGTTATTGAAATACTAGTAGT
AGAGCATGGCCACCAGTACGTCCGCACAGTAGTAGATTATGGCCATGACG
CACGCACAACGATTGGGTGCGATCGTTCCCGGAGGGCTTTTATAGCGAGC
AACGGTTTCGCTGCGCTCACGGTGCCTCGCTAAGCTTGCTGGAAGATTCG
CTTTTCAGGGACTACCCGAGTACAAAGTTGGAAAATATATATTCCGAATC
TTCCGAAACGACGACGACGGTGACGACCGTATGTGAGGTCATGTGGATGT
GTTGTAAAAAAAACAGCACATGATTAATTGCGCCTCTCTTGTCTCTGCTC
TTCTTTTCCTGCGTCATCTCAGGGGGAGTACGTGGCCCCTGAAAAGATCG
AGACCGTGCACGCCCAGAGTCCGCTGGTGGCCCAGTCGTTCGTGCATGGA
GACAGTCTACAGAGCTCCCTCGTGGCCGTCATCGTGCCCGACGCGGAGGC
TGTGGCTTCGTGGGCCAAGAAGAACGGACTCGGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15933:252..5338+

>mRNA_H-paniculata_contig15933.3438.1 ID=mRNA_H-paniculata_contig15933.3438.1|Name=mRNA_H-paniculata_contig15933.3438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig15933:252..5338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGACAGACAGAGACGACGGCAGGCGCGACCATGACCATGAGTAATGA
TTTCTCCGCGGGGCACGTCGGCGGTCCGTTCAGCTGTACGGAAATCTGCC
TCAAAGATGTCCCGGAGATGGGCTATCTCCATACCGACAGTTGGCATGGA
GGGGACCCGCGAGAGGGTGATGGAAGAGGCATCCCGTGCTCTGGTCGAGG
GGAGTACGGACAGACAGAGACGACGGCAGGCGCGACCATGACCATGAGTA
ATGATTTCTCCGCGGGGCACGTCGGCGGTCCGTTCAGCTGTACGGAAATC
TGCCTCAAAGATGTCCCGGAGATGGGCTATCTCCATACCGACAGTTGGCA
TGGAGGGGACCCGCGAGAGGGTGATGGAAGAGGCATCCCGTGCTCTGGTC
GAGGGGAGATCTGTTTCAGGGGTTCGAACGTGTTTATGGGGTATTACAAG
GAAGAGGACAAGACGAGAGAGGCCTTCGATGAGGATGGTTGGCTTCTGTC
GGGGGACATCGGGCTGTGGACCATGGACGGTGCTCTCAAGATCGTCGATC
TGTTTCAGGGGTTCGAACGTGTTTATGGGGTATTACAAGGAAGAGGACAA
GACGAGAGAGGCCTTCGATGAGGATGGTTGGCTTCTGTCGGGGGACATCG
GGCTGTGGACCATGGACGGTGCTCTCAAGATCGTCGACCGCAAGAAGAAC
ATCTTCAAGCTGTCTCAGACCGCAAGAAGAACATCTTCAAGCTGTCTCAG
GGGGAGTACGTGGCCCCTGAAAAGATCGAGACCGTGCACGCCCAGAGTCC
GCTGGTGGCCCAGTCGTTCGTGCATGGAGACAGTCTACAGAGCTCCCTCG
TGGCCGTCATCGTGCCCGACGCGGAGGCTGTGGCTTCGTGGGCCAAGAAG
AACGGACTCGGGTAAGGGGAGTACGTGGCCCCTGAAAAGATCGAGACCGT
GCACGCCCAGAGTCCGCTGGTGGCCCAGTCGTTCGTGCATGGAGACAGTC
TACAGAGCTCCCTCGTGGCCGTCATCGTGCCCGACGCGGAGGCTGTGGCT
TCGTGGGCCAAGAAGAACGGACTCGGGTAA
back to top