mRNA_H-paniculata_contig15931.3437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15931.3437.1
Unique NamemRNA_H-paniculata_contig15931.3437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A6H5KCS3_9PHAE (Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCS3_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 1.550e-118
Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKE 795
            +AISRWGI+YVVLTSVDRDDLEDGGANHFATTVELIKTAK  MLVECLVSDFRGD  AVDRLATSGLDVYAHN+ETVRRLQP+VRD RAGYDQSL+VL RAK AG   GVYTKTSLMLGLGETEEE+ ETMRDLR AGVDVLTLGQYLRPT+HHLAVV+YVTPE FD+YAR G+ALGF YVASGPMVRSSYKAGEFFMENMIR G++
Sbjct:  164 EAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGDALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQ 370
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A835ZC82_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC82_9STRA)

HSP 1 Score: 321 bits (822), Expect = 2.640e-104
Identity = 163/213 (76.53%), Postives = 178/213 (83.57%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKESGAGQG 813
            QA+SRWGI+YVVLTSVDRDDL DGGA HFA TVELIK A PGMLVECLVSDFRGD  AV RLATSGLDVYAHNVETV RLQ HVRD RAGY QSL VL  AK   A   +YTKTSLMLGLGETE EV +TMRD+R AGVDVLTLGQYLRPT+HHLAVVEYV P  FD Y   GEA+GFKYVASGP+VRSSYKAGEF++E+M+RSG+ +   +G
Sbjct:   91 QAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAK--AARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEG 301
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A7S0TJ40_HEMAN (Lipoyl synthase, mitochondrial n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJ40_HEMAN)

HSP 1 Score: 304 bits (779), Expect = 1.320e-98
Identity = 151/206 (73.30%), Postives = 176/206 (85.44%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGK 792
            +AI+ WG+DYVVLTSVDRDD+EDGGA+HFA TV+ +K  +P +LVECLVSDFRGDE+AV  LA SGLDVYAHN+ETV RLQP VRD RAGY+QSL VL RAKE   + GVYTKTS+MLGLGET +EV +TM+DLR AGVDVLTLGQYLRP++ HLAV EYVTPE FDEY   G A+GF+YVASGPMVRSSYKAGEFF+E+MI+  +
Sbjct:   18 KAIAEWGLDYVVLTSVDRDDMEDGGADHFAKTVQYLKVWQPEILVECLVSDFRGDEEAVRHLAGSGLDVYAHNIETVERLQPFVRDHRAGYEQSLRVLRRAKEF--QEGVYTKTSIMLGLGETRDEVIQTMKDLREAGVDVLTLGQYLRPSDKHLAVEEYVTPEQFDEYREIGNAMGFRYVASGPMVRSSYKAGEFFLEHMIKGDR 221
[Close]
BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A7S0N260_9CRYP (Lipoyl synthase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N260_9CRYP)

HSP 1 Score: 309 bits (791), Expect = 1.520e-97
Identity = 155/208 (74.52%), Postives = 177/208 (85.10%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKES 798
            +AI+ WG+DYVV+TSVDRDDL DGGA HFA TV+ +K   P +LVECLVSDF+G E +V  LA SGLDVYAHN+ETVRRLQPHVRD RAGYDQSL VL  AKEA A  G+YTK+S+MLGLGET EEVRETMRDLRAAGVDV+TLGQYLRPTE HLAV EYVTPE FD Y  +G  LGF+YVASGPMVRSSYKAGEFF+E+MI++ +E+
Sbjct:  225 KAIAEWGLDYVVITSVDRDDLPDGGAAHFAQTVQFLKVWNPKILVECLVSDFQGMEDSVRELARSGLDVYAHNIETVRRLQPHVRDRRAGYDQSLRVLGLAKEARA--GLYTKSSIMLGLGETVEEVRETMRDLRAAGVDVVTLGQYLRPTEAHLAVEEYVTPEAFDAYREYGMELGFRYVASGPMVRSSYKAGEFFLEHMIKTDREA 430
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A7S3RYP2_9SPIT (Lipoyl synthase, mitochondrial n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RYP2_9SPIT)

HSP 1 Score: 303 bits (775), Expect = 2.940e-97
Identity = 153/205 (74.63%), Postives = 172/205 (83.90%), Query Frame = 1 
Query:  178 AISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMG--VYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRS 786
            A+ +WGIDYVVLTSVDRDDL DGGA HFA TV  +K  KPG+LVECLVSDF GD++A+  LA SGLDVYAHNVETVRRLQ +VRD RAGYDQSL  L+ AK+  A  G  +YTKTSLMLGLGET+EEV   MRD+RAA VDVLTLGQYLRPT+HHLAVVEYVTPE FDE    GE +GF+YVASGPMVRSSYKAGEFFM+NMI++
Sbjct:   92 AVVQWGIDYVVLTSVDRDDLPDGGAGHFAKTVRTLKDLKPGILVECLVSDFAGDQEAIRTLALSGLDVYAHNVETVRRLQSYVRDRRAGYDQSLQGLAAAKKMAAAEGRRLYTKTSLMLGLGETKEEVLAAMRDMRAADVDVLTLGQYLRPTDHHLAVVEYVTPEVFDELRVAGEEMGFRYVASGPMVRSSYKAGEFFMQNMIKA 296
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A7S2UUF0_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF0_9STRA)

HSP 1 Score: 305 bits (781), Expect = 4.150e-97
Identity = 159/240 (66.25%), Postives = 181/240 (75.42%), Query Frame = 1 
Query:  121 GQSCDRSLSPLTVSARPK-------------QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMG--VYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKE 795
            G +C R      VS  P              +A+++WGI YVVLTSVDRDDL DGGA HFA TVE +K  +PG+LVECLVSDF GD  +V+ LA SGLDVYAHNVETVRRLQ  VRD RA YDQSL VL  AK+   + G  +YTKTSLMLGLGETEEEV + MRDLRAA VDV+T GQYLRPTEHHLAVVEYV P+ FD Y R GE +GFKYVASGPMVRSSYKAGEFFME+MI++G++
Sbjct:  142 GDTCTRGCKFCAVSTSPTPXXXXPQEPFHTAEAVAQWGITYVVLTSVDRDDLPDGGAGHFAQTVEFLKLRQPGILVECLVSDFAGDLSSVETLALSGLDVYAHNVETVRRLQGFVRDKRAEYDQSLKVLKHAKQVAQKDGRDLYTKTSLMLGLGETEEEVIQCMRDLRAADVDVVTFGQYLRPTEHHLAVVEYVHPDKFDNYRRIGEEMGFKYVASGPMVRSSYKAGEFFMEHMIKTGRK 381
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: W7T3L4_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3L4_9STRA)

HSP 1 Score: 302 bits (774), Expect = 4.000e-96
Identity = 154/212 (72.64%), Postives = 174/212 (82.08%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKESGAGQ 810
            +A++RWGI+YVVLTSVDRDD+ DGGA+HFA TVE IK  KP MLVECLVSDFRGD  AV+RLATSGLDVYAHNVETV RLQ +VRD RA Y QSL VL+ AK   A+  VYTKTSLMLGLGE E EV E MRD+RA  VDVLTLGQYLRPT+HHLAVVEYVTPE FD + + GE +GFKYVASGP+VRSSYKAGEFF+EN ++  K   A +
Sbjct:  162 EAVARWGINYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDFRGDLAAVERLATSGLDVYAHNVETVERLQKYVRDKRASYTQSLQVLAHAK--AAQPTVYTKTSLMLGLGEEEGEVLEAMRDMRAHNVDVLTLGQYLRPTDHHLAVVEYVTPEKFDFFRKQGEEMGFKYVASGPLVRSSYKAGEFFLENELKRVKAKRAAE 371
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: R7QN44_CHOCR (Lipoyl synthase, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN44_CHOCR)

HSP 1 Score: 300 bits (767), Expect = 6.360e-96
Identity = 152/215 (70.70%), Postives = 176/215 (81.86%), Query Frame = 1 
Query:  148 PLTVSARPKQAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGK 792
            PL  +A    A+++WG+DYVVLTSVDRDD+ DGGA+HFA TVE +K   P MLVECLVSDFRGD  AVDRLA SGLDVYAHNVETV+RLQ +VRD RA Y+QSL+VL RAKE+G    VYTKTSLMLGLGET EEVR+ M D+R AGVDVLTLGQYLRPTE HL+VVEYVTPE F  +   G+ +GF+YVA+GP+VRSSYKAGE+F+ NMIR  K
Sbjct:  106 PLNTAA----AVAKWGVDYVVLTSVDRDDMPDGGADHFARTVEYLKMYCPNMLVECLVSDFRGDFAAVDRLANSGLDVYAHNVETVQRLQRYVRDPRASYEQSLSVLKRAKESG----VYTKTSLMLGLGETNEEVRQAMLDIREAGVDVLTLGQYLRPTERHLSVVEYVTPERFRLWEEEGKEMGFRYVAAGPLVRSSYKAGEYFLNNMIRQDK 312
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A0G4EX03_VITBC (Lipoyl synthase, mitochondrial n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX03_VITBC)

HSP 1 Score: 298 bits (764), Expect = 6.560e-95
Identity = 152/241 (63.07%), Postives = 184/241 (76.35%), Query Frame = 1 
Query:  121 GQSCDRSLSPLTVSARPKQ-------------AISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMIRSGKESGA 804
            G +C R      V+  P+              AIS+WG+DY+VLTSVDRDD+ DGGA+HFA TVE +K A P +LVECLVSDF+GD++AV+RLATSGLDVYAHNVETV RLQ  VRD RA Y QSL VL +AKEA  E  VYTKTSLMLGLGETE+EV +TM+DLR    DV+T GQYLRPT+HHL+VVEY+TP+ F +Y R GE +GF+YVASGP+VRSSYKAGE+FM NMI + +++ A
Sbjct:  113 GDTCTRGCRFCAVNTSPEPPAPDPDEPLNTATAISQWGVDYIVLTSVDRDDMADGGADHFARTVEFLKAASPHILVECLVSDFQGDKEAVERLATSGLDVYAHNVETVERLQRFVRDKRANYKQSLDVLRQAKEA--EPRVYTKTSLMLGLGETEDEVIQTMKDLRDIDCDVITFGQYLRPTDHHLSVVEYITPDKFAKYGRLGEEMGFRYVASGPLVRSSYKAGEYFMTNMINTDRDNEA 351
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BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Match: A0A7S4VVM7_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VVM7_9STRA)

HSP 1 Score: 298 bits (763), Expect = 3.920e-94
Identity = 144/202 (71.29%), Postives = 174/202 (86.14%), Query Frame = 1 
Query:  175 QAISRWGIDYVVLTSVDRDDLEDGGANHFATTVELIKTAKPGMLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYDQSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVLTLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYKAGEFFMENMI 780
            +A+++WG+DY+VLTSVDRDD+ DGGA+HF TTVEL+K  KP +LVECLVSDF+GD  +V+ LA SGLDVYAHNVETVRRLQ  VRD RAGYDQSL+ L  AKEA  + G+YTKTS+MLGLGET+EEV +TM+DLR   VDV+T GQYLRPTE+HL+VVEYVTPE FD + + GE +GFKYVASGPMVRSSYKAGEF++++MI
Sbjct:  187 EAVTQWGVDYIVLTSVDRDDIPDGGASHFGTTVELLKAKKPSLLVECLVSDFQGDLNSVETLACSGLDVYAHNVETVRRLQKFVRDPRAGYDQSLSTLKHAKEA--KPGLYTKTSIMLGLGETDEEVIQTMKDLREIDVDVVTFGQYLRPTENHLSVVEYVTPEKFDHFRKVGEEMGFKYVASGPMVRSSYKAGEFYLKHMI 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15931.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCS3_9PHAE1.550e-11886.47Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus ... [more]
A0A835ZC82_9STRA2.640e-10476.53Lipoyl synthase, mitochondrial n=1 Tax=Tribonema m... [more]
A0A7S0TJ40_HEMAN1.320e-9873.30Lipoyl synthase, mitochondrial n=2 Tax=Hemiselmis ... [more]
A0A7S0N260_9CRYP1.520e-9774.52Lipoyl synthase (Fragment) n=1 Tax=Cryptomonas cur... [more]
A0A7S3RYP2_9SPIT2.940e-9774.63Lipoyl synthase, mitochondrial n=1 Tax=Strombidino... [more]
A0A7S2UUF0_9STRA4.150e-9766.25Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa ... [more]
W7T3L4_9STRA4.000e-9672.64Lipoyl synthase, mitochondrial n=2 Tax=Monodopsida... [more]
R7QN44_CHOCR6.360e-9670.70Lipoyl synthase, mitochondrial n=1 Tax=Chondrus cr... [more]
A0A0G4EX03_VITBC6.560e-9563.07Lipoyl synthase, mitochondrial n=2 Tax=Vitrella br... [more]
A0A7S4VVM7_9STRA3.920e-9471.29Lipoyl synthase, mitochondrial n=2 Tax=Ditylum bri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15931contigH-paniculata_contig15931:534..6066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue1.8e-74
Seed eggNOG ortholog2880.D7FSB7
Preferred namelipA
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipoate synthase activity
EggNOG OGsCOG0320@1,KOG2672@2759
Ec32 ortholog descriptionElongator protein 3/MiaB/NifB
Ec32 orthologEc-20_004920.1
EC2.8.1.8
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size1314
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15931.3437.1prot_H-paniculata_contig15931.3437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15931 1029..5766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.9734805-UTR-H-paniculata_contig15931:533..10281622929272.9734805-UTR-H-paniculata_contig15931:533..1028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15931 534..1028 -
1691480795.7244523-UTR-H-paniculata_contig15931:533..10281691480795.7244523-UTR-H-paniculata_contig15931:533..1028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15931 534..1028 -
1622929273.0411654-UTR-H-paniculata_contig15931:5766..60661622929273.0411654-UTR-H-paniculata_contig15931:5766..6066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15931 5767..6066 -
1691480795.760663-UTR-H-paniculata_contig15931:5766..60661691480795.760663-UTR-H-paniculata_contig15931:5766..6066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15931 5767..6066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.9928358-CDS-H-paniculata_contig15931:1028..12861622929272.9928358-CDS-H-paniculata_contig15931:1028..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 1029..1286 -
1691480795.7350142-CDS-H-paniculata_contig15931:1028..12861691480795.7350142-CDS-H-paniculata_contig15931:1028..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 1029..1286 -
1622929273.0059845-CDS-H-paniculata_contig15931:2610..28171622929273.0059845-CDS-H-paniculata_contig15931:2610..2817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 2611..2817 -
1691480795.7452333-CDS-H-paniculata_contig15931:2610..28171691480795.7452333-CDS-H-paniculata_contig15931:2610..2817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 2611..2817 -
1622929273.0196607-CDS-H-paniculata_contig15931:5712..57661622929273.0196607-CDS-H-paniculata_contig15931:5712..5766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 5713..5766 -
1691480795.7531476-CDS-H-paniculata_contig15931:5712..57661691480795.7531476-CDS-H-paniculata_contig15931:5712..5766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15931 5713..5766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15931.3437.1

>prot_H-paniculata_contig15931.3437.1 ID=prot_H-paniculata_contig15931.3437.1|Name=mRNA_H-paniculata_contig15931.3437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MLVECLVSDFRGDEKAVDRLATSGLDVYAHNVETVRRLQPHVRDSRAGYD
QSLAVLSRAKEAGAEMGVYTKTSLMLGLGETEEEVRETMRDLRAAGVDVL
TLGQYLRPTEHHLAVVEYVTPETFDEYARHGEALGFKYVASGPMVRSSYK
AGEFFMENMIRSGKESGAGQGR*
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mRNA from alignment at H-paniculata_contig15931:534..6066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15931.3437.1 ID=mRNA_H-paniculata_contig15931.3437.1|Name=mRNA_H-paniculata_contig15931.3437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5533bp|location=Sequence derived from alignment at H-paniculata_contig15931:534..6066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAAAAAACCCTTTCCGCTGCTTCCACTCTTCGGAAGATTTCTGAGT
GTCTGCATTTCCTTATTCCCTGTGATTATGGCAATTGCTGCGAAACTGTG
AACCTATACATGCACATTTTGGTCAAAGCTGTGACCGCTCCCTTTCTCCC
CTAACCGTCTCTGCACGACCAAAGCAGGCGATCTCGCGGTGGGGAATAGA
CTACGTTGTGTTGACCTCCGTGGACCGTGACGATTTGGAGGATGGTGGTG
CCAATCACTTCGCGACCACCGTGGAGCTGATAAAGACCGCGAAGCCTGGC
ATGCTCGTGGAGTGCCTAGTCAGCGACTTCAGGGGGGACGAAAAAGCTGT
TGATGTAAGTGGTGAAGTGGAGCAAGACGGGTATTTTTAGTCAAGGAGTA
TAGGTACTCAAGGTGAGTGATTGGAGTATGATCTACTTGGTGTGAGTAAT
GGAATGTGATATTTGGTTGGATGGTAGGAGTAGGATATTTGATGCATGTG
ATAAGAGGAGACCGTTTGAACCCTGTACCGCCGGAGCCCGAAAAAGAACA
ACAAAGGCACCTGACAGTCCCGAGGCGAAACCGCCAAGAAAAGGAAGGTG
AGGGCCCTTTTTACGAGGGAGGGGAGGGGGGAGGGGGGGGGGCGTCCGAC
TTCGTGGTGCTGGAGTATGGTAGTGGATTGTACACAGAATACCTAAGCTC
AGGCCAATCATGCGCATTTTTAAACCAACAACGGCCAATCAAAAACGTGT
CTTCTGCTGTACATAAATCAAGTTGTTTCGGGGTCACAAAATACCTATAC
AATACCTCCGGCTGTTTAGGCGGTTCGAACCAAACGTGCAGTCGTGGTCA
TGCCATTTTTGGTTTGTTGTGTTTTTTGGGGGCAACTTCCTTTTAGTCTG
GTTGCGTTTGTGGGCGCAAGATAGATAGTATAGATCGCGAGGGCGAGAGC
AATGACAGCCCATGATATATCTGAATATCTTGCCGCCGTGGCTGCGGCCG
ATATATTCAGCAACGACACAGACGCATTTCAGTTGAGCGACAAAGATTTC
TGCATTTGCTGTTCGCACTCTCTGCGGGTGTCGGAACCGCGCCGCGTGAG
CCATCGTGGTGTTTTTGATTAAATGTCCTGGCGTGTGGCTTCGTTCTACA
TACATTCCCTGTATAGCTAGTCAGTCGGTCATGATGTGATTTGTGCTTTA
TGTTTCGATCAAGTAAGTGCTGCTGTCGCGGAATGCCAAACCTTGCCAAT
TCCTGTGTGTGTGTGTGTGTGTGTGCCGTAATTTCAGGACCGTTTGTACA
GTCTGTAGAGCTGTTCCCTGTTCCCGCAATCATGTGGTGGGCGATTGTCA
CAAAATAACTCCGAAGGGATTTGGCCTTTTTTCCGAGCAGGTATTGCATG
TTGTACACGGCTCGGCGCCGTAGGAGTTAATGGAGGTGATCGAGTATGAC
AATATCTAGCGTTGCCCTAGCAACCCAACTGGTTAGAAACAAGCTGTTTT
TGCCAGATTGTTGAAGAGTGCTTGCTGTCACCTTACGAAGCAATTAATTT
CGGTTCGTTGGCATCGTTATTGGGAGACGCGATCGGGAGTTTGGTGTTGC
CCTGTAGCGACCTTGGCGGGAACTGTTTGGTCGCCATGCTACGAACGGTT
TTACCGACTGGTTTATGAGAGGTAATTATCGACACGTACGACGGAACAGA
ACAAGTTCTGTCTGTTGTAAAAGTTCGTTCTAGCATTGTTCAGTCCTACA
ATAGTAGATGATCCAACAAATTTTCGACAATCTGTTCCATTTTAACAGAT
GATCTGACAACATCTATTTCACATGTGCTCTATGCTGGATAGAAATCCGA
GAATGTGTTCTGTCGTCGCAGAGGAATAAAAAAATCTGTTCTGTTAAAGG
AAATGTAGACATGCTTGGGTGAATACCTGAGTATGGAAGCAGCGGTAAAG
GTTTTTGCCTCAGCCTTCCGGGGGTTGAAAAAAAAAAAAAATGTGTTCTG
TCGTGTGCGTGTAAGTATCCACGTGCTTGAATCCATCGCTAAACCGTTTC
TTCCGTGGTACGTGCCGCGTCGTGTCTGTTTCACAGGGTATTTGTTTAGT
CTCCGACTGGACACCCAGACCATAATTACTCATCCATCGCTTGTGGATCA
GGTGCTTGCTCAAATGCGAGTGAGTAGGTCAATTGAAAAAACAAACTTGA
CTTGAAAAGAACAGTTGAGCCTTTTGTCGGATCGTAAATATGGAGACAAG
TTCGTCAGTGCGTCCGTATTTATTCTCGGCGTCTGCCCCATAACGTGAAA
TCTGTGAACGCACCCCAAAACACGACTGTGTTGGGAGTTTAAAAATTGCA
GTGTTTTGCATAGTTGGCGCTCGCATGCTGTGCCGTGAAACTGCCATATA
TATGCTGATTTCATTTGCACTTCGCGCGAGCACTCGTACCTTCTCTCACC
AAGCCCCGCCAAAACTCCATAAATGTGCTAAATTTGCATACACTTCATAA
TGCGCTTTATCGAGCACTCTCATTTGTTTTACAGAGCCTCACGAAAATGT
CATCATTATGATGAAATCTGCAATTACTGATGTGCGCTATGCGCGAGTGC
AGTCGATGTTCTGAACAGTCCCACAGCACCTTGTTATCTTGCCGTTGGCT
TAAGCTACTCCCCTCACAACACTTCCGAGTGGTGCATACAGAGGGTGCAC
ACCCTGGGGTGGAAAGAAAGGAAAATCCCACAGCACCGTTTCACAAGTAA
AACGAAAATTTTGTCAAAACTTTCAACCCCGGGACAAGTACGAAAGGAAC
ATTCACAATTATCTCGAACTATCATTATTTGTCTCGGGTAAACACGTGTT
TATTCGTTTATTCGTTTATAAGTGTATTAATGGTCACTCTACAGATGGTC
ACCAGGTGGTCGTATACCCGGCGAACAGTCACTTATGCAGGTCATCTATA
GATATTCCGCACGGTACTGTACATATTGAATACTCCATCTGCCCGTGCTT
TTCGATGCTCCATAGTATATCGAGTACACTGTACATTATTCGCGTCACAT
CGACATCTTCCCCAACTCAAACAGATACCGTATTCATTCCAGATTTCTCG
TATTCAGTCGTGTCTTGTATTCGTATTTGTCTCCGGGGGTGAAAACTTTC
TTGTCGTCTGTCACATGGGAGTAAAAGCCTAATAAATAATGCTCGCATAT
GACGACTGTTTCGCTCTGCCGCTGCTGCAACCTTCAACCCCATGAGCAGC
GGTTAGCCACCTCCGGCTTGGACGTGTACGCGCACAACGTGGAAACAGTT
CGGCGATTGCAGCCGCACGTGCGGGATAGCCGAGCGGGTTACGACCAATC
CTTGGCTGTTTTGAGTAGAGCTAAGGAAGCCGGCGCGGAGATGGGGGTGT
ACACAAAGACTTCGCTCATGTTGGGACTCGGGGAGACCGAAGAAGAGGTT
CGGGAGGCAAGTCTTATAGAATGGTGGAATATGTCGGTGATCTTTGCGAT
CTTGATCGCTACTACCAGAGCCACACACAACGATGTGCGTCTACATTCGT
CAGTGGAGGTATAGGTATGCACATGTAGGTAGCTATGGTGGTCCCTACTT
CGCAGTTTCAGCCGTTTCCATCCGCAATTGGGGACAGAACGATCGACCCA
AGGAAAACATGAATCCTGAGACACGTTGCGAGTCTTGGCACCATCGCTAA
ATGAGGATGTTTTGTAATGGTCAAAAGCATATTGTTCGGCGAAAACGGCG
TCGAAACGAACAGCTGCCGGCTGATAATTGGCCCACGTGCTGGTAGGCCT
CACATCAATCCTCGAGCCACTTCTCAATATATCCCGGGCTAATTTCGAGC
GCGCAGGATGATTTTTGCTCAAAATAGTGTCCATTTTTGAAATCAGCGCC
TACTTAACGAGCACAGCTGAAACAGCTCATCCTTGCGTTAAAAAAGAGAC
GGACATCAAGATCTCTGTTTTGAGGGTTTGGAAAGTGACGAGTTCATATA
TGGACGTGTGACAGCACCATGCATACGCGGTATTTTCTGGACCCGCTGGT
GGACCACGACGCGCTGTTTACACCCAGGCAATGATCTCTTCTCCGGACTG
CGAGTATATACGAACACTCTTTTGTGACTCGATCAGAAGAAAGGATGATG
GATTCAACCCTCGGGATAGGCGTTGATCTCTGGAGGGTCCCAGGCCCGGT
GGCATTCCCAGCTTGAACACTGACGACGGAAATCCATGTCGGGTGTCGTT
ATAGGGAAAGGGGGTTTAGAGATGGACCCATCTATCCTGTATCCTGTATC
CTGTATCCACCGGGTACTGTTACAACGAGACCTTGTCCACCGGCAAAATA
TCCATTTATCAAGGGGCAGAGCCAAGATAGGTCCTTCTCGGCGACCATGC
GGTCGATGCGCGCTGCCGGAAGCAGTTTGTCAACCGGACAAATTATGATG
CGCCTGGTTGAGCTGAGATGGTGGTTTTGCCCACTCTGAACAGGCTTAGC
AGAAGCGCCGGTTACAGCATGCTACGTTGAAGCCCACGCGCAACAGAGAC
AAGATTCAGCCTATCCTGACACATCGTGATGGAACATGCGTGGCGTGTAT
TTTCCCATACTTGCGCCATCTGATTTATTTCTGATTGGTGATCTTCCGGC
CCCAGTTCCTAGTAACTTGCACGTTCATTTTTTTCGAGTTCTCTTCTCGA
GCAAAAGTTGCAGCAACAGCAACGAAAAGTCGTCTAACACGGTAAGAACA
TCCTCACGCTTGCCTTTGGTTTCTATTCAGACGATGCGGGATCTTCGTGC
CGCAGGCGTGGACGTGTTGACCCTGGGTCAATACCTGCGACCCACGGAGC
ATCACTTAGCTGTTGTGGAGTACGTTACCCCAGAAACGTTCGACGAGTAC
GCACGACACGGCGAGGCACTGGGGTTCAAATATGTCGCGAGTGGACCAAT
GGTGCGTTCTTCGTACAAGGCGGGAGAATTCTTCATGGAGAACATGATTC
GGAGCGGAAAGGAAAGCGGGGCAGGGCAGGGGCGGTAGCATGTGCGATGT
TGTCACAGGGTGGTCGTGTTCTGGCGTATACATTTCCAGTTTTGGTGCTT
AGATTCAAATATATAACATGGATGTCATCCAATTAACGCGTCTGATAAAG
AATCAGAATTTTCAGTAGACCTTCAAGTATTGTCATTATCTACTGTTTCC
GACCGGTATAGTAGAAAACATTGTATCACGAGTCGTGTTTAATGGGTCTT
CGAGTAAAACATTAGTTTTTTAACAAACCCAGTAGCAATCAAGGTCGACA
CGAAAGTGGGTTCACGACAGCAGAGCCGTGGAATTGCATGCCTGTCAAGG
CAATATTCCCATCGTCGAAACACGAACACTACGAAGAGATTTTGCTGGGT
AGACAGACCATGTATCAACAAAGGTGGAATAGAATATCCATTTTTTGTTT
TCAACTGTCACTTGCTCAATGAGCACACCACCCCCCAAAGATATATATAT
ATATATATATGTTAATATATATATATTAACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig15931:534..6066-

>mRNA_H-paniculata_contig15931.3437.1 ID=mRNA_H-paniculata_contig15931.3437.1|Name=mRNA_H-paniculata_contig15931.3437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig15931:534..6066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGTGGAGTGCCTAGTCAGCGACTTCAGGGGGGACGAAAAAGCTGT
TGATATGCTCGTGGAGTGCCTAGTCAGCGACTTCAGGGGGGACGAAAAAG
CTGTTGATCGGTTAGCCACCTCCGGCTTGGACGTGTACGCGCACAACGTG
GAAACAGTTCGGCGATTGCAGCCGCACGTGCGGGATAGCCGAGCGGGTTA
CGACCAATCCTTGGCTGTTTTGAGTAGAGCTAAGGAAGCCGGCGCGGAGA
TGGGGGTGTACACAAAGACTTCGCTCATGTTGGGACTCGGGGAGACCGAA
GAAGAGGTTCGGGAGCGGTTAGCCACCTCCGGCTTGGACGTGTACGCGCA
CAACGTGGAAACAGTTCGGCGATTGCAGCCGCACGTGCGGGATAGCCGAG
CGGGTTACGACCAATCCTTGGCTGTTTTGAGTAGAGCTAAGGAAGCCGGC
GCGGAGATGGGGGTGTACACAAAGACTTCGCTCATGTTGGGACTCGGGGA
GACCGAAGAAGAGGTTCGGGAGACGATGCGGGATCTTCGTGCCGCAGGCG
TGGACGTGTTGACCCTGGGTCAATACCTGCGACCCACGGAGCATCACTTA
GCTGTTGTGGAGTACGTTACCCCAGAAACGTTCGACGAGTACGCACGACA
CGGCGAGGCACTGGGGTTCAAATATGTCGCGAGTGGACCAATGGTGCGTT
CTTCGTACAAGGCGGGAGAATTCTTCATGGAGAACATGATTCGGAGCGGA
AAGGAAAGCGGGGCAGGGCAGGGGCGGTAGACGATGCGGGATCTTCGTGC
CGCAGGCGTGGACGTGTTGACCCTGGGTCAATACCTGCGACCCACGGAGC
ATCACTTAGCTGTTGTGGAGTACGTTACCCCAGAAACGTTCGACGAGTAC
GCACGACACGGCGAGGCACTGGGGTTCAAATATGTCGCGAGTGGACCAAT
GGTGCGTTCTTCGTACAAGGCGGGAGAATTCTTCATGGAGAACATGATTC
GGAGCGGAAAGGAAAGCGGGGCAGGGCAGGGGCGGTAG
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