mRNA_H-paniculata_contig15923.3432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15923.3432.1
Unique NamemRNA_H-paniculata_contig15923.3432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.710e-40
Identity = 75/146 (51.37%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRPDPAHDFDGKIGIWRVCVIKEAQRT-------TARRARG----------------EEYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DESWFYL+R+KEKVR+F GE+  G  +V H+SH+ K+M I A +RPDPAHDFDGKIGIWR+CVI+ AQR+       TA   R                 EEY+ + TIDAEWY+ WY+  LL A+K KM  L  +  +VQQDGA
Sbjct:  157 LDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGA 302          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.350e-12
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP--DPAH--DFDGKIGIWRVCVIKEAQRTTARRARGEEYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WF + + K +V + P E        QHKSH+ KLMF+CA++RP  DPA    FD  IGIW       A R+++ R  G      +  + E Y++  + +++ AV +K     G   ++Q+D A
Sbjct:   30 IDEKWFVVNKTKRRVYLTPTEPNPQR-HAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIWPFAEEIPAYRSSSNRQAGTLETKPLPANKETYKAMIMTEVVPAVVSKWPAWGGRHIVLQRDNA 155          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-11
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRPD----PAHDFDGKIGIWRVCVIKEAQRTTARRARGEEYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WF++ + K +V + P E     +  +HKSHI K+MF+CAV+RP         FDG++G+W       A+R +  R  G     +   + E Y+   +  +L A+K       G   ++Q+D A
Sbjct:  211 LDEKWFFMKKTKRRVYLTPTEP-TPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGMWPFANYAPAERASRNREAGTLVLKSFPANKETYKRMLIDSVLPAIKLNWPSWSGRRIVLQRDNA 336          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE)

HSP 1 Score: 70.1 bits (170), Expect = 1.440e-11
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGE-EYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WF + ++K      P E        Q KSHI K+MF+ AVSRP    D A  +DGKIGI+      +A+R++  R  G  E     +I+ +  +   L+ LL A+K K W     D I+QQD A
Sbjct:  212 IDEKWFNITKEKTTFYALPDEPDPYRT-AQSKSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGIFPFTYEAQAKRSSKNRPAGTLEVKATTSINRDEIKKMLLEKLLPAIKEK-WPGPTRDVIIQQDNA 337          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: Q8W1R1_AVESA (Transposase (Fragment) n=1 Tax=Avena sativa TaxID=4498 RepID=Q8W1R1_AVESA)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP--DPAHD--FDGKIGIWRVCVIKEAQRTTARRARGE-EYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAI-VQQDGA 369
            +DE WFY  R  +K  +   E        +HKSHI K+MF+CAV+RP  D A +  FDGK+G+W       A++ +  R RG  E  V   ++ +  R + +  +L A+K K    +    I +QQD A
Sbjct:    1 IDEKWFYRSRLNQKFYLCNDEPDPHRC-TKHKSHIDKVMFLCAVARPRFDAAGNCTFDGKLGVWAFVEEVAAKKKSKNRGRGTLETKVLPKVNMQVNRQYLINHVLPAIKAKWPEEDRHQTIWIQQDNA 128          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 68.2 bits (165), Expect = 6.750e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGE-EYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WFY+ +  ++  + P E++      + K +I+K+MF+CAVSRP    D    +DGK+GI+    +  AQR +  R RG  E     ++  E  R   +  ++ A+K K      +D  +QQD A
Sbjct:  171 IDEKWFYMTKASDRYYLLPDEDEPYR-SCKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNA 297          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: UPI001C251DD6 (uncharacterized protein LOC121809230 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C251DD6)

HSP 1 Score: 66.2 bits (160), Expect = 1.570e-10
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRPDPAHD----FDGKIGIWRVCVIKEAQRTTARRARGEEYDVNV-TIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WFY+ +  ++  + P E++      + K  I+K+MF+CAVSRP    D    FDGKIGI+       A+R +  R RG     ++ +++ E  +   L  ++ A+K K      +D  +QQD A
Sbjct:   64 IDEKWFYMTKASDRYYLLPDEDEPYRA-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGIFSFTEQVPAKRKSKNRPRGTLETKHIPSVNKEAMKECLLNQIIPAIKAKWPANASKDIYIQQDNA 190          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: UPI001263BEDE (uncharacterized protein LOC116126997 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263BEDE)

HSP 1 Score: 65.9 bits (159), Expect = 1.810e-10
Identity = 46/130 (35.38%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVS--RPDPAHD--FDGKIGIWRVCVIKEAQRTTARRARG--EEYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLE-GEDAIVQQDGA 369
            VDE WFY+ +  EK  + P E++      + K+ I+K+MF+  V+  R D + +  F GKIGI+     + A+R++  R  G  E   +N +I+ E YRS+ +K LL A+++K  R++ G    +QQD A
Sbjct:    7 VDEKWFYMTKQSEKYYLLPDEDEPLRT-CKSKTFITKVMFLATVTCLRFDESRNELFSGKIGIFPFINKEPARRSSKNRFAGTMETKTIN-SINKEIYRSYIIKKLLPAIRDKWPRIDAGSPIFIQQDNA 134          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: UPI002009DA99 (uncharacterized protein LOC125209340 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009DA99)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-10
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGE-EYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WFY+ +  ++  + P E++      + K  I+K+MF+CAVSRP    D    +DGK+GI+    +  AQR +  R RG  E     ++  E  R   +  ++ A+K K      +D  +QQD A
Sbjct:   68 IDEKWFYMTKASDRYYLLPDEDEPYR-SCKSKRFITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKPLHSVTKEVMRDCLINKIIPAIKAKWPIWASKDIYIQQDNA 194          
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Match: UPI00200958F7 (uncharacterized protein LOC125195984 n=2 Tax=Salvia hispanica TaxID=49212 RepID=UPI00200958F7)

HSP 1 Score: 66.2 bits (160), Expect = 3.200e-10
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    1 VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGE-EYDVNVTIDAEWYRSWYLKDLLSAVKNKMWRLEGEDAIVQQDGA 369
            +DE WFY+ +  ++  + P E++      + K  I+K+MF+CAVSRP    D    +DGK+GI+    +  AQR +  R RG  E     ++  E  R   +  ++ A+K K      +D  +QQD A
Sbjct:  171 IDEKWFYMTKASDRYYLLPDEDEPYR-SCKSKRFITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKPLHSVTKEVMRDCLINKIIPAIKAKWPIWASKDIYIQQDNA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15923.3432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.710e-4051.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XR23_9STRA3.350e-1233.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WV30_9STRA1.310e-1130.71Transposase putative n=1 Tax=Albugo laibachii Nc14... [more]
A0A484N8H9_9ASTE1.440e-1136.72Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
Q8W1R1_AVESA1.840e-1134.88Transposase (Fragment) n=1 Tax=Avena sativa TaxID=... [more]
UPI002008F0346.750e-1132.03uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]
UPI001C251DD61.570e-1032.03uncharacterized protein LOC121809230 n=1 Tax=Salvi... [more]
UPI001263BEDE1.810e-1035.38uncharacterized protein LOC116126997 n=1 Tax=Pista... [more]
UPI002009DA992.730e-1032.03uncharacterized protein LOC125209340 n=1 Tax=Salvi... [more]
UPI00200958F73.200e-1032.03uncharacterized protein LOC125195984 n=2 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15923contigH-paniculata_contig15923:3231..3599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue8.8e-12
Seed eggNOG ortholog70448.A0A090MBK9
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.634981-CDS-H-paniculata_contig15923:3230..35991622929272.634981-CDS-H-paniculata_contig15923:3230..3599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15923 3231..3599 -
1691480795.6175494-CDS-H-paniculata_contig15923:3230..35991691480795.6175494-CDS-H-paniculata_contig15923:3230..3599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15923 3231..3599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15923.3432.1prot_H-paniculata_contig15923.3432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15923 3231..3599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15923.3432.1

>prot_H-paniculata_contig15923.3432.1 ID=prot_H-paniculata_contig15923.3432.1|Name=mRNA_H-paniculata_contig15923.3432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
VDESWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHISKLMFICAVSRPDPA
HDFDGKIGIWRVCVIKEAQRTTARRARGEEYDVNVTIDAEWYRSWYLKDL
LSAVKNKMWRLEGEDAIVQQDGA
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mRNA from alignment at H-paniculata_contig15923:3231..3599-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15923.3432.1 ID=mRNA_H-paniculata_contig15923.3432.1|Name=mRNA_H-paniculata_contig15923.3432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig15923:3231..3599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGACGAGTCGTGGTTCTACCTGATCCGTGACAAGGAAAAGGTGCGCAT GTTCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGCAGCACAAGAGTC ACATTTCCAAACTGATGTTCATCTGCGCCGTTTCACGCCCCGATCCTGCA CACGACTTCGACGGAAAGATCGGAATCTGGCGTGTCTGCGTCATCAAGGA GGCACAAAGGACTACCGCGCGGCGCGCCAGGGGCGAGGAGTACGACGTCA ACGTCACCATCGACGCTGAATGGTACCGGAGTTGGTATCTCAAAGATTTG TTATCGGCCGTGAAGAACAAGATGTGGCGGTTGGAGGGCGAAGATGCCAT CGTGCAGCAGGACGGAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig15923:3231..3599-

>mRNA_H-paniculata_contig15923.3432.1 ID=mRNA_H-paniculata_contig15923.3432.1|Name=mRNA_H-paniculata_contig15923.3432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig15923:3231..3599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGACGAGTCGTGGTTCTACCTGATCCGTGACAAGGAAAAGGTGCGCAT
GTTCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGCAGCACAAGAGTC
ACATTTCCAAACTGATGTTCATCTGCGCCGTTTCACGCCCCGATCCTGCA
CACGACTTCGACGGAAAGATCGGAATCTGGCGTGTCTGCGTCATCAAGGA
GGCACAAAGGACTACCGCGCGGCGCGCCAGGGGCGAGGAGTACGACGTCA
ACGTCACCATCGACGCTGAATGGTACCGGAGTTGGTATCTCAAAGATTTG
TTATCGGCCGTGAAGAACAAGATGTGGCGGTTGGAGGGCGAAGATGCCAT
CGTGCAGCAGGACGGAGCGGTCGACGAGTCGTGGTTCTACCTGATCCGTG
ACAAGGAAAAGGTGCGCATGTTCCCAGGGGAAGAAAAAGTGGGCTCGATC
AAGGTGCAGCACAAGAGTCACATTTCCAAACTGATGTTCATCTGCGCCGT
TTCACGCCCCGATCCTGCACACGACTTCGACGGAAAGATCGGAATCTGGC
GTGTCTGCGTCATCAAGGAGGCACAAAGGACTACCGCGCGGCGCGCCAGG
GGCGAGGAGTACGACGTCAACGTCACCATCGACGCTGAATGGTACCGGAG
TTGGTATCTCAAAGATTTGTTATCGGCCGTGAAGAACAAGATGTGGCGGT
TGGAGGGCGAAGATGCCATCGTGCAGCAGGACGGAGCG
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