mRNA_H-paniculata_contig15915.3426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15915.3426.1
Unique NamemRNA_H-paniculata_contig15915.3426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15915.3426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15915contigH-paniculata_contig15915:1606..5880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size736
Cds size735
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15915.3426.1prot_H-paniculata_contig15915.3426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15915 1606..5880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.378075-CDS-H-paniculata_contig15915:1605..16981622929270.378075-CDS-H-paniculata_contig15915:1605..1698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 1606..1698 -
1691480795.2990973-CDS-H-paniculata_contig15915:1605..16981691480795.2990973-CDS-H-paniculata_contig15915:1605..1698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 1606..1698 -
1622929270.3882234-CDS-H-paniculata_contig15915:2526..27901622929270.3882234-CDS-H-paniculata_contig15915:2526..2790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 2527..2790 -
1691480795.3140912-CDS-H-paniculata_contig15915:2526..27901691480795.3140912-CDS-H-paniculata_contig15915:2526..2790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 2527..2790 -
1622929270.535354-CDS-H-paniculata_contig15915:5502..58801622929270.535354-CDS-H-paniculata_contig15915:5502..5880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 5503..5880 -
1691480795.3259745-CDS-H-paniculata_contig15915:5502..58801691480795.3259745-CDS-H-paniculata_contig15915:5502..5880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15915 5503..5880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15915.3426.1

>prot_H-paniculata_contig15915.3426.1 ID=prot_H-paniculata_contig15915.3426.1|Name=mRNA_H-paniculata_contig15915.3426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
LAAARRSSAATVVTLAEAPADKVRKEAEIDALHAELAAAQEKTATAVAEV
ASVASSLGVERTKHALEVRELWDKVAKGWRSVNEANNEADGAKDDARRLH
DENAAARTRLVESESEVKELQQILSQSTANYHRASNASQDTAAAILEAKC
AAQVAECEATSLRERPESATNRSQKLSSELAEFWAREALSKIDSKDDISK
ELEDQREELRVEEEERVWRLRGCCWMRRRKTRRHKRQPRHAVRR*
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mRNA from alignment at H-paniculata_contig15915:1606..5880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15915.3426.1 ID=mRNA_H-paniculata_contig15915.3426.1|Name=mRNA_H-paniculata_contig15915.3426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4275bp|location=Sequence derived from alignment at H-paniculata_contig15915:1606..5880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGCAGCAGCTCGACGATCTTCGGCTGCCACCGTGGTCACCTTGGCCGA
AGCACCCGCCGACAAAGTAAGAAAGGAGGCAGAGATCGATGCTCTCCACG
CGGAGTTGGCAGCGGCTCAAGAAAAGACCGCGACGGCGGTGGCGGAGGTG
GCCAGCGTTGCCTCTTCGTTGGGGGTCGAACGGACTAAACACGCTCTAGA
GGTTAGGGAACTATGGGATAAAGTGGCCAAGGGATGGAGGTCGGTGAATG
AGGCCAATAACGAGGCAGATGGGGCGAAGGACGATGCAAGAAGACTACAT
GATGAGAACGCGGCGGCTCGCACTCGGTTGGTGGAGAGCGAGAGCGAGGT
CAAGGAGCTACAGCAAATACTTTCGCAGGTGTGTCTCTATTCGGGCGCTG
AAGAGTGGCAGAGTAGGATGATGTTGTGATATGCTAGCGGCTGCAGTATC
TTTGGGTTCCCGTGCGTGCTTACCAAAGTGGCGGAAGTAACGTGTATGCT
TAGAGACATTTTGTTTTTTACCTCTCTTAGTGCGGCGTCTCTGGGAGGGG
AGTCTATATTAGATTAAAGCTGTTGTTACGAGGTTTTCGATGCACCCGTC
AAATTTTGTCACAATTTGACTGACTCTTTGAACCCAAAACGCGGATTACA
TGTTTCGGAGTAGTAATAATAATAATAATATGTTTCTCGCTCGTGATGTC
AGCTTTCGAGCGATAAATGGCACGGACCATAACTCCCTGCCCTAGGGGGT
TTAAACGTCCAAAAAAGACAAGAGGGTCAGTTTGGTACGTTGTTTTGTAG
GACGTATGCAATTTTCATTATCCACGAGTACAGTTGTCATGACCCAATTG
CCTCTCCGCATCGTCGTCTGCAGTACATACAGCTATGCGTACCGCTGCAG
TTAGGATATAGGCTGTGGTATTGACGAGGGATGTCAAAGATGATGTTCTT
GAAACAATCAAGGTGTCTCTACCCAGTGGCACTGAGTTTGTTACAGCTGA
GAGGGGAATCATCACGAAATGAAAACTCGTACACTGTGCGCATGTATGCC
ACAAGAAACGGAACTTGTGTGCGACGCGAGAGTAACGGCATCAAATCACC
GGGTAGAGGTTGCAACGAAGCGCACATAAGTGGTGGTTTGTGATAAACCT
GGCGGCAGAGGGTCTGCTCTGCGACCTTTGCCGAGGCTGTGAAATGAGTG
GAGAGACGAAATAAGCGCAAGCTTGCCGGTACGGGCGAGCGCAAGACTGC
TGCAGATACCGAAGATCGCAGCGAGCGACGCTCACCGTTCATGACGAATC
CTAAGCCGAAAGAAACGAAAAAAAGTTTGAAAAACGCCTCAGGAAAACCC
CTGAAAATCAACAGTTCCGAGTGTTCGGATGAAATTCCAAATGCAGATTT
ACTTTTCATGAATTTTGGATTTTTCTCTGCCAATGGCGTCAGAAGTTATG
ATGGCACACACTTGTTCGCAGAAGCTACTTCCGCCACTTTGGGGCACCCA
CGATGGCCCCTTCCACCTCGCCTTCCCCCTGATAGTTAGAGTGGTTCAAG
TTTACTGATGGGGATACATAGCCGAAAGTGTCGACTAGATAGCCTCAGCA
TGATGGGATGCACGTGTATTTAAAAAACGATGGAGTTTAGATTGCGTGAC
GAACCAATGAGGTGGGTCGGCCGGTAGTGGTTTTGCAAGTGTGTGTGTAT
TTGGTTCTTGTCAGTGCTCATTGACAGGTGATGCTGGATCTATGCACGTG
ATACACGCAAGTGGTATGGTCGTAATCCCTACTCCCTAGTACCTGGTAGA
TGGCATAGTTATAATCATAGTTCACGTGCTGTTTCCGTTCCAAGCAGTGC
TATTGCTATTGCTATTGCCACTGCTATCTGCCCTTTCGTAGTACTATTCA
ATGGTGAACACTTGGAGTCGTGGATTTTTTTATGGAAGAAGCGCTGTCCG
TGTAGCTTATTCAGGCCATGTAACACAATTTTAAAACAAATGATCCCAAG
TCACTCGGAAGGTCATTCATCCACGTCATTCACTTGCAGGATGCAGATGC
ACAAGTGCGGATGAGGCGTGATGATAGTCATAGGCGAGCAAATACTTGAC
CACGGGCAGCTCTCTCAGCCAAGTATGCTCAATCTCACAACAGGGACACC
TAGGCTCCAGGTAGCTCTCCGGAAACCCGTACCCAGTGACTAGAGACGCT
GCTCGTGACCACATTTGACTCATACGTACTTCCCAGATGGCGTCTCCTTT
CTGTTTTTCAGCTTTCGATATCTTTCCTGTGGACCATATACTTTCAACAG
TAATACATATAGGTGAAGCGTAAAATTTCAAATTAACAACATATCTACGT
TTTGATAACCATGGGCATGACATCTCCCCTGCCCCCCACCCCGGTGTTAC
ACCTGCACATGCCGTTAATGGGAAATTACTATTCGTTAGGATTACAAAAA
TCATGTACTGTACATACAATTTGCAAATAAAGTGGTCGTGCTGCCATGTA
TTTGTTATATCCAACCCAGGCGATTAAAAACATGTGTTATGTATTTTGTT
TTTTAGAAAAGGTATATGACGTATATGTATACACGTGAAAACGAGGGGGG
CTGTCCTCGACGGGCGTTGGTTGCCTATTACCCATTTTAAGGTGTTCCTA
AGGTGGTCACCATATCACCTCCTCCCTTCTTGGAGTCTTACTTTGGATTA
CTCAGTCATACGCGATGACGCTCCCCGTGTGAATGGATGGTAACTGTCCT
CGACGGACGTTGGCTGATTATTACCCTTTTTAAGATGTTACAAAGGTAGC
CATCACGTATGTACATGTATGTACTTGAAACATAATGTATTCGCGCGTAA
CGTCACGCCGCTCCTCACCAGCAAGAAAATAATTCACTCCCCAAGTCTCA
AAATATGGTTGTGACGCATGTTTTCACCCATCACTCAGCGTCAGTACCTA
CTGGTATCAAGCGCGAGAATGACTCACGTTTGCCATTATAGTATCATGTT
ACAGGTAACGTTTGATCTTTCACCTCTCATTAGTCGTCCCCCCTTGAACA
CTCCGTGCTTACACTTTGTCATCTGGTCCGATACATGCAGTCTACAGCCA
ATTACCACCGAGCATCGAACGCTAGCCAAGACACCGCTGCCGCCATTTTG
GAGGCGAAGTGCGCAGCGCAAGTTGCCGAGTGTGAGGCGACATCCCTCCG
GGAAAGGCCGGAGTCCGCCACGAACCGGTCTCAGAAACTGTCGTCAGAAC
TCGCGGAATTTTGGGCAAGGGAGGCGTTGTCGAAGATCGACTCGAAAGAC
GACATTTCCAAGGAACTAGAGGACCAGCGGGAAGAGCTCAGGGTCGAGGA
GGAGGTGAGCAGTCTAATGCGCCATTCGTTCTCTTATATGTACTGTCCTG
TATTGTATGTTGAGGCTGTCGCTGTGCTCGCTCGCTCCTGATGTACGTGG
TGAACCAATCTGCAAGTCGGAGAGATGTCGTGAAAACTGACGTAAGCGAG
GTCTCCGTAGCTGGTGAACTTTTGTTTGTATATATATTTATATAATGCTT
TCTTCGTTCATGTACTGAGGTTAATTAACGAATTTTTATGAAGGTAGATT
TTAGTCTAGGAGCGTTATCGGGCGTGATCTCTCTCATGCTGTCACGCTGG
GTGGTTTGGCGTAGTTTCTAAATCTCTGTTGTTTCAGCAGGCATCTCAAA
GTCCTTGGAGGCAATCGAACAGGTATGCAGAGATCTTCCTGACCGTCAGT
ATGTTGGTCGTTGCAAACGGGCGAACGGGCTCGTGATTGCGTCGCAATAT
GCGTGCCACGCTGTGTCACGGTGCAGTTGTTGATTATTTTTGTGGCTGAT
TATTCCGTAGGTCGGGTAGGCAACGCGGAGCTGCTGGCGTCTATGAGATG
AGACGTTCTTATTATCAGCTCTCTGTCGATACCATAGTTGGTTTCTGGTT
TTCGCCATGGCGTTGTCTCGCTCGGTGCCAGAGTGTAGTGTGACAGATGC
ACACACACATATGACTAACTGGCTGAGTGTACGTTGGGGTCTATGGTTGT
ATGGTTTCACTAGACCAAAATAATGAGTAAAACGGGAGTTGCCAAGCAGT
TGCATTCCTCAGATCGACGGGTATCTGTAGTTTTGGAGCAACGACCGTCT
CTCGACGATGTGTGCAACGCTGATGCTTACAGGAGCGGGTGTGGCGACTG
CGCGGATGCTGTTGGATGCGAAGGCGGAAGACGAGGAGGCACAAGCGGCA
GCCACGGCACGCCGTCCGCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15915:1606..5880-

>mRNA_H-paniculata_contig15915.3426.1 ID=mRNA_H-paniculata_contig15915.3426.1|Name=mRNA_H-paniculata_contig15915.3426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig15915:1606..5880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGCAGCAGCTCGACGATCTTCGGCTGCCACCGTGGTCACCTTGGCCGA
AGCACCCGCCGACAAAGTAAGAAAGGAGGCAGAGATCGATGCTCTCCACG
CGGAGTTGGCAGCGGCTCAAGAAAAGACCGCGACGGCGGTGGCGGAGGTG
GCCAGCGTTGCCTCTTCGTTGGGGGTCGAACGGACTAAACACGCTCTAGA
GGTTAGGGAACTATGGGATAAAGTGGCCAAGGGATGGAGGTCGGTGAATG
AGGCCAATAACGAGGCAGATGGGGCGAAGGACGATGCAAGAAGACTACAT
GATGAGAACGCGGCGGCTCGCACTCGGTTGGTGGAGAGCGAGAGCGAGGT
CAAGGAGCTACAGCAAATACTTTCGCAGCTAGCAGCAGCTCGACGATCTT
CGGCTGCCACCGTGGTCACCTTGGCCGAAGCACCCGCCGACAAAGTAAGA
AAGGAGGCAGAGATCGATGCTCTCCACGCGGAGTTGGCAGCGGCTCAAGA
AAAGACCGCGACGGCGGTGGCGGAGGTGGCCAGCGTTGCCTCTTCGTTGG
GGGTCGAACGGACTAAACACGCTCTAGAGGTTAGGGAACTATGGGATAAA
GTGGCCAAGGGATGGAGGTCGGTGAATGAGGCCAATAACGAGGCAGATGG
GGCGAAGGACGATGCAAGAAGACTACATGATGAGAACGCGGCGGCTCGCA
CTCGGTTGGTGGAGAGCGAGAGCGAGGTCAAGGAGCTACAGCAAATACTT
TCGCAGTCTACAGCCAATTACCACCGAGCATCGAACGCTAGCCAAGACAC
CGCTGCCGCCATTTTGGAGGCGAAGTGCGCAGCGCAAGTTGCCGAGTGTG
AGGCGACATCCCTCCGGGAAAGGCCGGAGTCCGCCACGAACCGGTCTCAG
AAACTGTCGTCAGAACTCGCGGAATTTTGGGCAAGGGAGGCGTTGTCGAA
GATCGACTCGAAAGACGACATTTCCAAGGAACTAGAGGACCAGCGGGAAG
AGCTCAGGGTCGAGGAGGAGTCTACAGCCAATTACCACCGAGCATCGAAC
GCTAGCCAAGACACCGCTGCCGCCATTTTGGAGGCGAAGTGCGCAGCGCA
AGTTGCCGAGTGTGAGGCGACATCCCTCCGGGAAAGGCCGGAGTCCGCCA
CGAACCGGTCTCAGAAACTGTCGTCAGAACTCGCGGAATTTTGGGCAAGG
GAGGCGTTGTCGAAGATCGACTCGAAAGACGACATTTCCAAGGAACTAGA
GGACCAGCGGGAAGAGCTCAGGGTCGAGGAGGAGGAGCGGGTGTGGCGAC
TGCGCGGATGCTGTTGGATGCGAAGGCGGAAGACGAGGAGGCACAAGCGG
CAGCCACGGCACGCCGTCCGCAGGTAAGAGCGGGTGTGGCGACTGCGCGG
ATGCTGTTGGATGCGAAGGCGGAAGACGAGGAGGCACAAGCGGCAGCCAC
GGCACGCCGTCCGCAGGTAA
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