mRNA_H-paniculata_contig15900.3421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15900.3421.1
Unique NamemRNA_H-paniculata_contig15900.3421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.220e-62
Identity = 94/120 (78.33%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEVSDV 360
            W+E+GNADVLVPR+ ++PLGVVHF+GG GVGVFPRN+YGALL  L D GFL++ATRV LNEFNH +LACDVARDFR+AYR+VE+LYGR+A RRIPLFG+GHSLGAKVHVLLN YPEV DV
Sbjct:  120 WEEIGNADVLVPRDVDYPLGVVHFVGGQGVGVFPRNAYGALLEGLVDAGFLVVATRVRLNEFNHDQLACDVARDFRVAYRDVEALYGRTAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDV 239          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: A0A836CAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.910e-47
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEVSDV 360
            W+ VG  +VL+P+  EFPLGVVHF+GG  VG  PR +YG  L  +A  GF+++AT + +NEFNHQELACDVAR+FRL YR+VE+LYGR+A RR P+FG+GHS+GAK+ VL+N +P+V DV
Sbjct:   95 WKRVGKVEVLLPKGVEFPLGVVHFIGGQAVGAVPRATYGPFLEGIARAGFVVLATPIRINEFNHQELACDVAREFRLCYRDVEALYGRAALRRAPVFGIGHSMGAKLQVLINCFPDVRDV 214          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: A0A7S2DBU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBU8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.380e-28
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 WQEVGNADVLVPR---EAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNE-----FNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEVS 354
            W+   NADVL P     A  PLGVVH +GG  +G  PR +Y  L   L++ GFL+IATR          +NH++LAC  ARDF+ A+  +E  YG   A R+PLFG+GHSLGAK+ +L+ SYPEV+
Sbjct:  146 WEVWYNADVLPPPYDVNAPLPLGVVHLIGGTILGNNPRATYNGLAEGLSERGFLVIATRQAAGPGGKYLWNHRDLACASARDFKRAWGVIEEQYGPLVAARLPLFGVGHSLGAKLQLLIGSYPEVN 271          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: W7TQQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQQ9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.340e-22
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 WQEVGNA-DVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYP 345
            WQ V    DV  P  +  P G+VHF+GGA VG FPR +YG LL  L   G+ +IAT +P + F+H   A  +A  +      VE +YG    +++P+FGLGHSLGAK+ +LL S P
Sbjct:  134 WQRVDEGVDVFFPEASAPPKGLVHFVGGAVVGAFPRAAYGPLLERLGRQGYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPP 249          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: UPI0019C367A5 (DUF1350 family protein n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019C367A5)

HSP 1 Score: 89.4 bits (220), Expect = 1.970e-20
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEV 351
            W EV  + VL+PR    P+GV+HFLGGA V   P  SY  LL  LA  G++IIAT   +N F H  +A  V   F      +E  Y     R +P+FGLGHS+G K+H+L+ S  EV
Sbjct:    3 WLEVSGSWVLIPRR---PVGVIHFLGGAFVATLPHVSYRRLLEFLASQGYVIIATPF-VNTFEHSAIAEQVLWQFDRTLYALEDRY--MGDRNLPIFGLGHSMGCKLHLLIGSLFEV 113          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: A0A1L9QWG8_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QWG8_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 2.700e-20
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEVS 354
            W E+    VLVP     P+ +VHFLGGA +G  P  +Y  LL A+A  G++I+ T   +N F+H ++A  V   F     ++E L G+   R +PL+GLGHS+G K+H+++ S+P+++
Sbjct:    3 WLEIDENWVLVPPR---PIAIVHFLGGAFIGAAPHVTYRWLLEAIATQGYIIVTTPF-INTFDHYQIARSVLEQFNQTLTQLERL-GKLRRRYLPLYGLGHSMGCKLHLIIGSFPKIN 115          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: UPI001A09D48D (DUF1350 family protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI001A09D48D)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-20
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEV 351
            WQEV    +LVP     P+ +VHFLGGA V   P  +Y  LL  LA  G+LI+AT   +N F+H+ +A +V   F  A R ++     S  R +P++GLGHS+G KVH+L+NS  EV
Sbjct:    3 WQEVAGNWILVPPR---PVAIVHFLGGAFVAAAPSLTYRWLLENLAQQGYLIVATPF-INTFDHEAIAEEVLITFGQALRYLDQRVLTSQQRYLPIYGLGHSMGCKVHLLINSLWEV 115          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: A0A5B8NI92_9CHRO (DUF1350 domain-containing protein n=1 Tax=Euhalothece natronophila Z-M001 TaxID=522448 RepID=A0A5B8NI92_9CHRO)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-19
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAA--RRIPLFGLGHSLGAKVHVLLNSYPEV 351
            W+E+    VL+P +   P G++HFLGGA V   P+ +Y  LL +LA+ G+ IIAT   LN+ NH  +A       + A    E+ Y RS    R +P++GLGHS+G K+H+L+NS  EV
Sbjct:    4 WEEIAGNSVLLPSQ---PKGIIHFLGGAFVATAPQVTYSWLLESLAEEGYAIIATPF-LNDLNHSAIA-------QRALNRFETAYQRSGLFRRYLPIYGLGHSMGCKLHLLINSLYEV 111          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: A0A0D8ZNP3_9CYAN (Uncharacterized protein n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZNP3_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.980e-19
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARR--IPLFGLGHSLGAKVHVLLNS 339
            WQE+    VL+PR    P+G+VHFLGGA V   P  +Y  LL  LA+ GF ++AT   +N  +H  +A  V + F    R V  L+ RS  RR  +P++GLGHS+G K+H+L+ S
Sbjct:    3 WQEISGNWVLIPRH---PVGIVHFLGGAFVATAPHLTYRWLLEQLAEQGFAVVATPF-VNTLDHSAIALSVLQSFD---RTVAELHARSLLRRRYLPIYGLGHSMGCKLHLLIGS 110          
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Match: M1WSB1_9NOST (Alpha/beta superfamily hydrolase n=2 Tax=Richelia TaxID=98443 RepID=M1WSB1_9NOST)

HSP 1 Score: 89.7 bits (221), Expect = 2.430e-19
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGFLIIATRVPLNEFNHQELACDVARDF--RLAYREVESLYGRSAARRIPLFGLGHSLGAKVHVLLNSYPEVSDV 360
            WQE+ +  V+VPR    P+G+VHFLGGA VG  P  +Y  LL  L+  GF+IIAT   LN  +H  +A     DF   L Y + +S+ G++    +P++G+GHS+G K+H+L+ S  +V  V
Sbjct:   11 WQEISSNWVIVPRN---PIGIVHFLGGAFVGYLPHITYRLLLENLSAKGFIIIATSF-LNSLDHITIAKQALLDFDQALLYLQKKSVLGKAY---LPIYGVGHSMGCKIHLLIGSLYKVDRV 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15900.3421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS7_ECTSI3.220e-6278.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAD4_9STRA1.910e-4760.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DBU8_9STRA1.380e-2848.41Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TQQ9_9STRA8.340e-2244.83Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
UPI0019C367A51.970e-2044.44DUF1350 family protein n=1 Tax=Leptolyngbyaceae cy... [more]
A0A1L9QWG8_9CYAN2.700e-2038.98Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
UPI001A09D48D3.920e-2044.44DUF1350 family protein n=1 Tax=Leptolyngbyaceae cy... [more]
A0A5B8NI92_9CHRO1.920e-1942.02DUF1350 domain-containing protein n=1 Tax=Euhaloth... [more]
A0A0D8ZNP3_9CYAN1.980e-1943.48Uncharacterized protein n=1 Tax=Aliterella atlanti... [more]
M1WSB1_9NOST2.430e-1941.80Alpha/beta superfamily hydrolase n=2 Tax=Richelia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15900contigH-paniculata_contig15900:4360..5326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D7FVS7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QSXN@2759,COG1084@1
Ec32 ortholog descriptionProtein of unknown function DUF1350
Ec32 orthologEc-01_001990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.5880945-CDS-H-paniculata_contig15900:4359..45041622929269.5880945-CDS-H-paniculata_contig15900:4359..4504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15900 4360..4504 +
1691480794.9962244-CDS-H-paniculata_contig15900:4359..45041691480794.9962244-CDS-H-paniculata_contig15900:4359..4504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15900 4360..4504 +
1622929269.6013558-CDS-H-paniculata_contig15900:5111..53261622929269.6013558-CDS-H-paniculata_contig15900:5111..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15900 5112..5326 +
1691480795.0077012-CDS-H-paniculata_contig15900:5111..53261691480795.0077012-CDS-H-paniculata_contig15900:5111..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15900 5112..5326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15900.3421.1prot_H-paniculata_contig15900.3421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15900 4360..5326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15900.3421.1

>prot_H-paniculata_contig15900.3421.1 ID=prot_H-paniculata_contig15900.3421.1|Name=mRNA_H-paniculata_contig15900.3421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
WQEVGNADVLVPREAEFPLGVVHFLGGAGVGVFPRNSYGALLTALADNGF
LIIATRVPLNEFNHQELACDVARDFRLAYREVESLYGRSAARRIPLFGLG
HSLGAKVHVLLNSYPEVSDV
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mRNA from alignment at H-paniculata_contig15900:4360..5326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15900.3421.1 ID=mRNA_H-paniculata_contig15900.3421.1|Name=mRNA_H-paniculata_contig15900.3421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=967bp|location=Sequence derived from alignment at H-paniculata_contig15900:4360..5326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAGGAGGTAGGAAACGCCGACGTCTTGGTGCCCCGAGAAGCGGAGTT TCCGTTGGGGGTGGTGCACTTTTTGGGGGGAGCGGGGGTCGGCGTTTTCC CGAGGAATTCGTATGGTGCCTTGCTGACGGCTCTTGCTGACAACGGTGAG AGAAGAGAGGGTGCAAATGTTGGTGGGGGTGGTGATGATGCTGTTATGTT ATGAATCGGTGCCTTGTACTGTTTTGGTTTGGATATATTTATGGTCACTT GTGCCATGTGCCCGTATGCCTGCCCATTTTCTGCCTGCCCGTCTGCTTGC CTGCCGGTTTTTTGTTACGTGTCGATTTGCTTGTCGTAGTTGTTTTTTTG TGTGCGCTGCCTTGCGCCATTTTATACTTCTGTGTGTTCGTGTATGCTTT GACGTATTTATGTTTGGGTTACAAGACGGTTAGACAGCGTGTGTCTTTCT ACTTTTGTCATCACCTGAAAAGCCTCGGCGGATCTCTACGCTCCGCATCC CTTTTCAGAGAATCGTTTCGTTGCTCGTTTCCACTATCGGTCAAAGCGTC TGAATACATCCTGGAAAAACAACTGATAGATATTTTTTCGGGCACAAAAT GGTCAACTTCCTATACGGAATATACATTCTCGACTTAACACGCGGATTCG CCTACTCCACTCCTTGTATTTTGGTCACTTTGTGGATGAGTAATCGCCTA CCCTCTCCCCCCCGTTCTCCCAAACCTTCCCCAACACACACGAAACGAAA AGGCTTTTTAATAATTGCTACTCGGGTGCCACTGAACGAGTTCAATCATC AGGAGCTGGCGTGTGATGTCGCGCGCGATTTTCGCCTGGCCTACCGAGAG GTGGAGTCGCTATACGGCCGGTCCGCTGCGCGACGCATTCCCTTGTTCGG CCTGGGGCACTCCCTCGGCGCCAAAGTGCACGTGCTGCTCAACAGTTACC CGGAAGTGTCGGACGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig15900:4360..5326+

>mRNA_H-paniculata_contig15900.3421.1 ID=mRNA_H-paniculata_contig15900.3421.1|Name=mRNA_H-paniculata_contig15900.3421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig15900:4360..5326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAGGAGGTAGGAAACGCCGACGTCTTGGTGCCCCGAGAAGCGGAGTT
TCCGTTGGGGGTGGTGCACTTTTTGGGGGGAGCGGGGGTCGGCGTTTTCC
CGAGGAATTCGTATGGTGCCTTGCTGACGGCTCTTGCTGACAACGTGGCA
GGAGGTAGGAAACGCCGACGTCTTGGTGCCCCGAGAAGCGGAGTTTCCGT
TGGGGGTGGTGCACTTTTTGGGGGGAGCGGGGGTCGGCGTTTTCCCGAGG
AATTCGTATGGTGCCTTGCTGACGGCTCTTGCTGACAACGGCTTTTTAAT
AATTGCTACTCGGGTGCCACTGAACGAGTTCAATCATCAGGAGCTGGCGT
GTGATGTCGCGCGCGATTTTCGCCTGGCCTACCGAGAGGTGGAGTCGCTA
TACGGCCGGTCCGCTGCGCGACGCATTCCCTTGTTCGGCCTGGGGCACTC
CCTCGGCGCCAAAGTGCACGTGCTGCTCAACAGTTACCCGGAAGTGTCGG
ACGTGGCTTTTTAATAATTGCTACTCGGGTGCCACTGAACGAGTTCAATC
ATCAGGAGCTGGCGTGTGATGTCGCGCGCGATTTTCGCCTGGCCTACCGA
GAGGTGGAGTCGCTATACGGCCGGTCCGCTGCGCGACGCATTCCCTTGTT
CGGCCTGGGGCACTCCCTCGGCGCCAAAGTGCACGTGCTGCTCAACAGTT
ACCCGGAAGTGTCGGACGTG
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