mRNA_H-paniculata_contig159.3417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig159.3417.1
Unique NamemRNA_H-paniculata_contig159.3417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 2.490e-117
Identity = 190/258 (73.64%), Postives = 211/258 (81.78%), Query Frame = 1
Query:  628 CAFVIPTGARLGALGAKSRGDSGPSMKKLQMVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANSNYGSSQPIRVFEV 1401
            CA+   TG     +  +S G        L+M YGKVFVAGG+KGVGRAVIDKLV+QGSEVVALVRRE+ K ELEAI GV+AVVCDALDLKGVE  LDGCDAAITTLGGA    E KRVDY GNRNVIESAGILGITR+V+VTSVGCGSSREAISD+VYQ LEKAL AKTLAENMLLKYYTNSEWTIIRPGGLKS+  TG+A+LTEDTK AGV++RADVADL VQ LNSP TVRKILTA+DPA  S+Y S++    F +
Sbjct:   24 CAWNKVTGTARSTISGQSTG--------LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 284 bits (727), Expect = 6.490e-90
Identity = 149/234 (63.68%), Postives = 182/234 (77.78%), Query Frame = 1
Query:  700 SMKKLQMVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANSNYGSSQPIRVFEV 1401
            S   L M Y KVFVAGGS GVGR V+++LV +G +VVA+VRRE+   EL AI GVTAV+ DALDLKGVEGALDGCDAAITTLGG+S    E RVDY GNRNVIESAGILG+TR++LVTSVGCG SR AISD+VY +LEKAL AKT AE ML KYYTN+ WTIIRPGGL++   TG A+LTE+  IAG++ RADVAD+ V+ L++  T +K+ TA+DP+  S++G +     F +
Sbjct:   32 SSSSLSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGSSG---ENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.010e-88
Identity = 147/235 (62.55%), Postives = 179/235 (76.17%), Query Frame = 1
Query:  697 PSMKKLQMVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANSNYGSSQPIRVFEV 1401
            PS   L   Y  VFVAGGSKGVGR VIDKL+EQGS+VVALVR+EEV A+L +I GVTA+V DA D K VE A+DGCDAAITTLGG+++D    R+DY GN NVIESAGILG+ R++LVTSVGCGSS+EA  + V++ L++ L AK  AEN+L+KYYTNS W+IIRPGGLKSEP TG+A+LTED K  G + R DVA L V+ L SPKT RKILTA+DP+  S   +   +  F +
Sbjct:   30 PSNTALFATYKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQD-TGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 271 bits (693), Expect = 9.710e-85
Identity = 140/226 (61.95%), Postives = 173/226 (76.55%), Query Frame = 1
Query:  724 YGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANSNYGSSQPIRVFEV 1401
            Y KVFVAGG++GVGR ++D+L+ QGSEVVALVR E+   EL AI GVTA+  DA + K VE A+DGCDAAITTLGGA+ DG  KRVDY GN NVIESAGILG+TR++LVTSVGCGSS+EA    V++ L++ L+AK  AEN+L+KYYTN  WTIIRPGGLKSEP TG A+LTEDT+  G + R DVA L ++ LNS  T RK+LTA+DP+ +S     + +  F V
Sbjct:   43 YKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATSDGG-KRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQVEAFAV 267          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 267 bits (683), Expect = 4.680e-83
Identity = 143/249 (57.43%), Postives = 178/249 (71.49%), Query Frame = 1
Query:  628 CAFVIPTGARLGALGAKSRGDSGPSMKKLQ----MVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANS 1362
            C+  +P    +    A S   S  S+  ++      Y KVFVAGGSKGVGR V+DKLV  G+ VVALVR EE  AEL A+ GVTAV+ DA D K VEGA+DGCDAA++TLGG + +  ++RVDY GN NVIE+AGILG+TR+VL+TS+GCGSS+EA    V++ L+  LSAK  AEN+L+KYYTN+ WTIIRPGGLKSEP TG A+LTED    G + R DVA L +Q L SPKT +KIL+A+DP   S
Sbjct:   17 CSAFVPASTFVSRTTASSAKKSYSSLYMVEGQGGQTYNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDPEITS 265          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.690e-82
Identity = 144/236 (61.02%), Postives = 176/236 (74.58%), Query Frame = 1
Query:  664 ALGAKSRGDSGPSMKKLQMVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLG-GASRDGEE-KRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANSN 1365
            A G +  GD+ P+ K     Y KVFVAGGS+GVGRAV+D L+  GSEVVALVR +E +AEL A+ GVT    DA D K VEGA+DGCDAAITT+G G    GE  KRVDYVGN NVIE+AGILG+TR+VLVTS+GCGSS+EA    V++ L+  L+AK  AEN+L+KYYTN  WTI+RPGGLKSEP TG+A+LTE+    G + R DVADL VQ LNS  T RKIL+A+DP  +++
Sbjct:   42 ATGLRMAGDAAPASK-----YSKVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDPEISAS 272          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS)

HSP 1 Score: 257 bits (656), Expect = 4.520e-79
Identity = 137/214 (64.02%), Postives = 161/214 (75.23%), Query Frame = 1
Query:  724 YGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGE-EKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANS 1362
            Y KVFVAGGSKGVGR V+DKLV  G+EVVALVR +E   EL A+ GVTA+  DA+D K VEGA+DGCDAAITTLGG     E EK VDYVGN NVIE+AGILG+TR+VLVTS+GCGSS+EA    VY+ L+  L  K  AE +L +YYTN  WTI+RPGGL SEP TG AVLTEDT   G + R DVADL V+ L+S  T +KIL+A+DP+  S
Sbjct:   48 YKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIES 261          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA)

HSP 1 Score: 257 bits (656), Expect = 4.820e-79
Identity = 132/213 (61.97%), Postives = 163/213 (76.53%), Query Frame = 1
Query:  724 YGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANS 1362
            Y KVFVAGGSKGVGR ++DKL+E GSEVVALVR +E   EL A+ GVTA++ DA + K VEGA+DGCDAAITTLG  +   + KRVDY GN NVIE+AGILG+TR++L+TS+GCGSS+EA    V++ L+  L+AK  AEN+L+KYYTN  WTIIRPGGLKSEP TG A+LTED    G + R DVA L V+ L S KT RK+L+A+D +  S
Sbjct:   51 YKKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQSIPS 263          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.060e-78
Identity = 132/213 (61.97%), Postives = 162/213 (76.06%), Query Frame = 1
Query:  724 YGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDPAANS 1362
            Y KVFVAGGSKGVGR ++DKL+E GSEVVALVR +E   EL AI GVT ++ DA + K VE A+DGCDAAITTLG  S   + KRVDY GN NVIE+AGILG+TR++LVTS+GCGSS+EA    V++ L+  L+AK  AEN+L+KYYTN+ WTI+RPGGLKSEP TG A+LTED    G + R DVA L V+ L S KT RK+L+A+D +  S
Sbjct:   54 YKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQSIPS 266          
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA)

HSP 1 Score: 254 bits (648), Expect = 6.450e-78
Identity = 130/214 (60.75%), Postives = 164/214 (76.64%), Query Frame = 1
Query:  709 KLQMVYGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAVVCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGILGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNSEWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTVRKILTAMDP 1350
            +L+M Y KVFVAG +KGVGR ++++LV +  EVVA VRREE K EL  + GVTA++ DAL  K VEGA+DGCDAA+TTLG A  D +  +VDY GN NVIE+AGILG+TR +LVTSVGCG S+EA+S + Y+ LE AL AK  AE +L KYYTNS+WT+IRPGGL +   T +AVLTE+    GV++RADVA L V+ L+S KT RK+LTA+DP
Sbjct:   60 QLEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig159.3417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ06_ECTSI2.490e-11773.64Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A835Z825_9STRA6.490e-9063.68Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
A0A7S3L6R6_9STRA3.010e-8862.55Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7FVE3_PHATC9.710e-8561.95Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UDM5_9STRA4.680e-8357.43Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0AIJ9_9STRA1.690e-8261.02Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
B8C036_THAPS4.520e-7964.02NAD(P)-bd_dom domain-containing protein n=1 Tax=Th... [more]
A0A6U3NUE1_9STRA4.820e-7961.97Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HK64_9STRA1.060e-7861.97Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2V5P0_9STRA6.450e-7860.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig159contigH-paniculata_contig159:26448..30004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.9
Seed ortholog evalue1.7e-95
Seed eggNOG ortholog2880.D7FJ06
Hectar predicted targeting categorychloroplast
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1483
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig159.3417.1prot_H-paniculata_contig159.3417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig159 27021..29925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.5644696-UTR-H-paniculata_contig159:26447..270201622929268.5644696-UTR-H-paniculata_contig159:26447..27020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 26448..27020 +
1691480794.502606-UTR-H-paniculata_contig159:26447..270201691480794.502606-UTR-H-paniculata_contig159:26447..27020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 26448..27020 +
1622929268.6387749-UTR-H-paniculata_contig159:29925..300041622929268.6387749-UTR-H-paniculata_contig159:29925..30004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 29926..30004 +
1691480794.5531383-UTR-H-paniculata_contig159:29925..300041691480794.5531383-UTR-H-paniculata_contig159:29925..30004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 29926..30004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.5795863-CDS-H-paniculata_contig159:27020..271031622929268.5795863-CDS-H-paniculata_contig159:27020..27103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27021..27103 +
1691480794.5133343-CDS-H-paniculata_contig159:27020..271031691480794.5133343-CDS-H-paniculata_contig159:27020..27103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27021..27103 +
1622929268.5935369-CDS-H-paniculata_contig159:27302..275051622929268.5935369-CDS-H-paniculata_contig159:27302..27505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27303..27505 +
1691480794.5246515-CDS-H-paniculata_contig159:27302..275051691480794.5246515-CDS-H-paniculata_contig159:27302..27505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27303..27505 +
1622929268.6082332-CDS-H-paniculata_contig159:27824..280691622929268.6082332-CDS-H-paniculata_contig159:27824..28069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27825..28069 +
1691480794.5340495-CDS-H-paniculata_contig159:27824..280691691480794.5340495-CDS-H-paniculata_contig159:27824..28069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 27825..28069 +
1622929268.6236029-CDS-H-paniculata_contig159:29625..299251622929268.6236029-CDS-H-paniculata_contig159:29625..29925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 29626..29925 +
1691480794.5430405-CDS-H-paniculata_contig159:29625..299251691480794.5430405-CDS-H-paniculata_contig159:29625..29925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 29626..29925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig159.3417.1

>prot_H-paniculata_contig159.3417.1 ID=prot_H-paniculata_contig159.3417.1|Name=mRNA_H-paniculata_contig159.3417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MMTGSRAFFVALLCSAYTCAFVIPTGARLGALGAKSRGDSGPSMKKLQMV
YGKVFVAGGSKGVGRAVIDKLVEQGSEVVALVRREEVKAELEAITGVTAV
VCDALDLKGVEGALDGCDAAITTLGGASRDGEEKRVDYVGNRNVIESAGI
LGITRLVLVTSVGCGSSREAISDEVYQNLEKALSAKTLAENMLLKYYTNS
EWTIIRPGGLKSEPETGSAVLTEDTKIAGVVSRADVADLTVQVLNSPKTV
RKILTAMDPAANSNYGSSQPIRVFEV*
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mRNA from alignment at H-paniculata_contig159:26448..30004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig159.3417.1 ID=mRNA_H-paniculata_contig159.3417.1|Name=mRNA_H-paniculata_contig159.3417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3557bp|location=Sequence derived from alignment at H-paniculata_contig159:26448..30004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCCATCGCACATGATAAACAAGTGCGTGCAGATAACAGTCTAGGCTT CATCAAGAAGGAAGCCTTTGCCCATTTAGCAACATATACATCGCACAGAA CAACAAGCAAAATACCAACATTACATACAGGAATGGACACGCCAGCAGAT AGAGGAGGAACTTACAACTGAGCGTCAATCTCCTCGTCCGGGTAAAGGTA GATGATGGTCTTCAGCCCGAGTCGTTCCAAAAAAGGATAGTTGATCTCGG TGGGGAGGGCGGACCTATAAAGTCCTTCTTCTACCAGACCAAAGCTGACA GGTGGAAAGAACATGAGCAGTGATGAGACTTTGGACGCTGCTTCGAATTG CTTTATGGTAAAGGCTTTCCAGCCGTTCGCTTCCTGGGAGCAAAGGATTT GTCAAGAAGGGGCTCGTCTGCCACTACAGTAAAGACAATATATTTTGTGC GGGAGGAACATGATGGGGAAGCGGGTCGGCGCTGGAACTAGTGTGGTGTA CAAACAAAAATATTGACTCGTCTCATGTAGGAGACAAAACGGGAGGCAGT TAGTGGTTTTGGGAGACGTAGCGATGATGACTGGATCGCGTGCCTTCTTT GTTGCATTGCTATGTTCAGCCTACACATGTGCATTTGTTATTCCGACCGG CGCACGGTGAGAATTTGGTGGGAAGTTATGCGGTTCCGTGTGCATGATTC ATCACACGAGCAAAGCTCACTGTAGCGAGCGTAATACCCAGCGAGTAGAA ATCGTGCCAAAGAACGTTGGCATGTTTGCCTCAACAGCAATGCCGCGCTG TGCATCTATCAGTTTTGGTCATCTTGAATTGCCGCATTCCCATGTTGTGC TACAGGCTAGGTGCACTTGGAGCGAAGAGTAGAGGAGATTCTGGGCCAAG CATGAAGAAGTTGCAAATGGTATATGGGAAGGTGTTCGTTGCTGGTGGAT CGAAGGGTGTTGGCCGAGCAGTTATAGACAAGCTAGTTGAGCAGGGGTCC GAAGTGGTGGCGCTGGTTCGCAGGGAAGAGGTCAAGGCAGAATTGGAAGC GATTACGGGTGCGTTGGAGATGCCTATGATGTGTCGCATGAAATTGATTG GAAGCATGGCTACATGTAAAGTGTAGTGATCGTACCGTTGGTCACAAGCA GTGTGCGAAAATCATTGACCGGTCTCTATCGGGTATCACACGTCTTTCGT CGTGTAATGTAGTTAAGTTGGCTACACATCATAGAGCTAGCTACATAGTG CACCACCGCCCCGTACTGTAGCCATGGATATCTTCTAGACGTTATGGTGG CCGGTAGCCCATCATACTAATATATTGTGTGTTTGCGGCTCAAGTTGACA ACAGTGTGCCTGTCTGCTCGCGAACAGGTGTAACGGCTGTGGTCTGTGAT GCGTTAGACCTGAAAGGCGTCGAGGGAGCTCTTGATGGATGTGATGCCGC CATCACTACGCTTGGCGGGGCGTCCAGAGACGGCGAGGAGAAACGTGTGG ACTATGTGGGCAACCGCAATGTCATAGAATCTGCCGGAATTCTGGGCATC ACTCGACTTGTTCTGGTAACGAGCGTCGGTTGCGGCAGCAGCCGCGAGGC CATCAGTGATGAGGTCTATCAGGTGATGTCCTTAAGCAGCATCGAGGAGG CATGTGTAGGAATGATGTATTGGCTCGATTTTTTTATCGCCCCAAGGGCA GGGGGTGGCAGCAAGATAACTCGCCAGTATCCCCATTTTTAGGCCATTTT AGGCCTTCAGCCAGCTCGCCACATATACGTCTACCGCCGATCTCTATATT TTATTCCCCTAGATCCAGCTTGGATTCTCAACCCTCTCAGCATCGGAGAC TTGTTGAAAACGAAAATGACATCTAATGATAAATGTTGAACCCTCCAAAA TTTGTTGGTAAAACTATGCTCATTACCTGTCTTTCTGAACAGCAGCGGCT CCATATCACCATAAAATGTTCCAGGTAGGTGTTGTTTCCCTCTGCTTTCG AATTAAGGGTTGGGTATGGTGAAATAGAACTGGCGCTAAAGAGGTTATAT ACGGCGCTAGGTCTCGTAAACAAGTTGGGAGCCCCTTCATCTCCAAAATG TTGGGTGTGGCATTCTTGCCTTCTGGAGACGGTATATCACCATATGACTA AATGAATAAACTTGCTGTACTATTGAGAGGACGATGCCATCTCATATTGA GCGCGGAATTGTCACCTCCAGACTACTGCATGAATCTTCATTGGAGATGT GTGACGTCTACCATACTACCCGACAAGTGACGAATCTTATGTATGCCTGG CGGACTTGGACTTGTCCTGTAGCATCGATCACGTCGGTCATATTCGTGCC CTCTCCAAGAAACGTCGAACTTGCCAGCATGTCCAGTGGCTATGTCTGTG TTTGAGGCGACAATATTTGAAGGAGCTGTCGTGTGTCAATCATTCAGTCT CCTCTTCTACCGGTAGTGGTGTTGTACCTTGTGCCTCAGGAAAACGGCGT CTAAATTGATATAATACCCCTTTCATCGCGACACGCGCAAGGAACATGCT TATTCAAACATGATATAACTACGTTTACATCTACAGTAACGGCTAAAAAC AGGCGAAGTCCACATCTCTTTCGTTCGACGAGTCTGCTCATCTGTGATAT AGCGACAATAAGTAACAGAAGGAAACGTCCAAGAGTTCAGTAGAAAGTAG AGAGTCCATCCAACGGAGGGGCGGCGTACGAACTGAGAAACGGAGACCAT TACTGCCGCTGTTGTTTTTCGCACTGGCAGCATCCCTCTAAGATAAAGCA ATTCAGTTCGAATTGCAAACTGTACGGGCTGGTCCCAGGAGGAGGAAGAC CCGTTAGATTTGGCTTCTCGGGTTTTATTCCCATGTACGAAATAAAAACA TGTTGCTTTGGATGATGTGAGTTGAGGATCCCGAGCAAACCGAAGATAAC CCCTTGGGTATACTAATAAGCAATATATGTACCACATACAAAGTCGACGT GTAGTTCAAAAAAAAAATTGCTGAGTTTTTGTATCTGCAAGTGAGATTTT GCAAAAACTAAACGTGAACCGAAGATTGTTACTAATTCCAAGTACGCGTA TTCCAAAATAAACTCCACAACCCCACCTGGTTCCTTCCTTGTGACGTCTC TCTCTCCCAACATTTGGGATTAATACAGAATCTTGAGAAGGCGCTATCGG CGAAAACTTTGGCGGAAAATATGCTGCTCAAGTATTACACCAACTCCGAG TGGACAATTATTCGCCCGGGTGGACTCAAGAGCGAGCCCGAAACAGGAAG TGCGGTGCTAACGGAAGATACTAAGATTGCCGGAGTAGTAAGCAGGGCAG ATGTGGCGGATCTGACTGTTCAAGTTTTGAACTCTCCCAAGACAGTTAGA AAAATACTTACAGCGATGGATCCAGCAGCCAATAGCAACTATGGCTCTAG TCAACCGATTAGAGTGTTTGAAGTTTAATGATGGAAAAGTTTCTTGACCG CAAGAGCGGTTAATTTATGGATGTTATTCGGTGTGGAACCTCCGACACCT TGTATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig159:26448..30004+

>mRNA_H-paniculata_contig159.3417.1 ID=mRNA_H-paniculata_contig159.3417.1|Name=mRNA_H-paniculata_contig159.3417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig159:26448..30004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACTGGATCGCGTGCCTTCTTTGTTGCATTGCTATGTTCAGCCTA
CACATGTGCATTTGTTATTCCGACCGGCGCACGATGATGACTGGATCGCG
TGCCTTCTTTGTTGCATTGCTATGTTCAGCCTACACATGTGCATTTGTTA
TTCCGACCGGCGCACGGCTAGGTGCACTTGGAGCGAAGAGTAGAGGAGAT
TCTGGGCCAAGCATGAAGAAGTTGCAAATGGTATATGGGAAGGTGTTCGT
TGCTGGTGGATCGAAGGGTGTTGGCCGAGCAGTTATAGACAAGCTAGTTG
AGCAGGGGTCCGAAGTGGTGGCGCTGGTTCGCAGGGAAGAGGTCAAGGCA
GAATTGGAAGCGATTACGGGCTAGGTGCACTTGGAGCGAAGAGTAGAGGA
GATTCTGGGCCAAGCATGAAGAAGTTGCAAATGGTATATGGGAAGGTGTT
CGTTGCTGGTGGATCGAAGGGTGTTGGCCGAGCAGTTATAGACAAGCTAG
TTGAGCAGGGGTCCGAAGTGGTGGCGCTGGTTCGCAGGGAAGAGGTCAAG
GCAGAATTGGAAGCGATTACGGGTGTAACGGCTGTGGTCTGTGATGCGTT
AGACCTGAAAGGCGTCGAGGGAGCTCTTGATGGATGTGATGCCGCCATCA
CTACGCTTGGCGGGGCGTCCAGAGACGGCGAGGAGAAACGTGTGGACTAT
GTGGGCAACCGCAATGTCATAGAATCTGCCGGAATTCTGGGCATCACTCG
ACTTGTTCTGGTAACGAGCGTCGGTTGCGGCAGCAGCCGCGAGGCCATCA
GTGATGAGGTCTATCAGGTGTAACGGCTGTGGTCTGTGATGCGTTAGACC
TGAAAGGCGTCGAGGGAGCTCTTGATGGATGTGATGCCGCCATCACTACG
CTTGGCGGGGCGTCCAGAGACGGCGAGGAGAAACGTGTGGACTATGTGGG
CAACCGCAATGTCATAGAATCTGCCGGAATTCTGGGCATCACTCGACTTG
TTCTGGTAACGAGCGTCGGTTGCGGCAGCAGCCGCGAGGCCATCAGTGAT
GAGGTCTATCAGAATCTTGAGAAGGCGCTATCGGCGAAAACTTTGGCGGA
AAATATGCTGCTCAAGTATTACACCAACTCCGAGTGGACAATTATTCGCC
CGGGTGGACTCAAGAGCGAGCCCGAAACAGGAAGTGCGGTGCTAACGGAA
GATACTAAGATTGCCGGAGTAGTAAGCAGGGCAGATGTGGCGGATCTGAC
TGTTCAAGTTTTGAACTCTCCCAAGACAGTTAGAAAAATACTTACAGCGA
TGGATCCAGCAGCCAATAGCAACTATGGCTCTAGTCAACCGATTAGAGTG
TTTGAAGTTTAAAATCTTGAGAAGGCGCTATCGGCGAAAACTTTGGCGGA
AAATATGCTGCTCAAGTATTACACCAACTCCGAGTGGACAATTATTCGCC
CGGGTGGACTCAAGAGCGAGCCCGAAACAGGAAGTGCGGTGCTAACGGAA
GATACTAAGATTGCCGGAGTAGTAAGCAGGGCAGATGTGGCGGATCTGAC
TGTTCAAGTTTTGAACTCTCCCAAGACAGTTAGAAAAATACTTACAGCGA
TGGATCCAGCAGCCAATAGCAACTATGGCTCTAGTCAACCGATTAGAGTG
TTTGAAGTTTAA
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