mRNA_H-paniculata_contig15887.3410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15887.3410.1
Unique NamemRNA_H-paniculata_contig15887.3410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15887.3410.1 vs. uniprot
Match: D7FMY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY5_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.720e-43
Identity = 119/237 (50.21%), Postives = 139/237 (58.65%), Query Frame = 1 
Query:   16 ASEDALDVLLANLMLGTPQDHNRGRIISASDDXXXXXXXDGVKPRRKSNVARASGNVDSDEHDPWKALSDQMNEEISRQIYAELXXXXXXXXXXXXXXCQAEQTRQMDEXXXXXXXXXXXXXXXASIDREA--PRDGTYEYYSDEYGYSSGEEENELENLPWSEGGEGGIGSLGLRQVPIEHGVSTNSNTIPGSILGTPKYTQEELQRMVDNLYGDGTNEKVAGPGAWGKAKWRPGG 720
            AS D LD LLA L+  T +          SDD        GV         RA   V+  +HDPWKALSDQ+N+EISRQI+ +L              CQ EQ+R MD XXXXXXXXXXXXXXX     E    +DG YEYYSDE  YSS EE  E+E LPWSEGGEGGIGSLGL +   E+G S+        + G PKYT++EL +MVD LYG+G   K  GPGAWG+  WRP G
Sbjct:   13 ASNDPLDTLLARLLASTSE---------GSDDDSKGVA--GVPKTSARGPMRAGSRVE--DHDPWKALSDQVNDEISRQIFDDLDKQLDAQMMAELEKCQEEQSRLMDXXXXXXXXXXXXXXXXXXXXXELRDDQDG-YEYYSDEDEYSSDEEGYEIERLPWSEGGEGGIGSLGLGES--ENGASS----CEAHMFGAPKYTKDELDKMVDLLYGEGGAGKQVGPGAWGRGSWRPRG 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15887.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMY5_ECTSI2.720e-4350.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15887contigH-paniculata_contig15887:803..4666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002790.1
Exons4
Model size744
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15887.3410.1prot_H-paniculata_contig15887.3410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15887 803..4666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.57524-CDS-H-paniculata_contig15887:802..11281622929267.57524-CDS-H-paniculata_contig15887:802..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 803..1128 -
1691480794.0293903-CDS-H-paniculata_contig15887:802..11281691480794.0293903-CDS-H-paniculata_contig15887:802..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 803..1128 -
1622929267.590653-CDS-H-paniculata_contig15887:1850..19111622929267.590653-CDS-H-paniculata_contig15887:1850..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 1851..1911 -
1691480794.04416-CDS-H-paniculata_contig15887:1850..19111691480794.04416-CDS-H-paniculata_contig15887:1850..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 1851..1911 -
1622929267.6091821-CDS-H-paniculata_contig15887:2673..28021622929267.6091821-CDS-H-paniculata_contig15887:2673..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 2674..2802 -
1691480794.0549233-CDS-H-paniculata_contig15887:2673..28021691480794.0549233-CDS-H-paniculata_contig15887:2673..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 2674..2802 -
1622929267.6242926-CDS-H-paniculata_contig15887:4438..46661622929267.6242926-CDS-H-paniculata_contig15887:4438..4666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 4439..4666 -
1691480794.0712235-CDS-H-paniculata_contig15887:4438..46661691480794.0712235-CDS-H-paniculata_contig15887:4438..4666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15887 4439..4666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15887.3410.1

>prot_H-paniculata_contig15887.3410.1 ID=prot_H-paniculata_contig15887.3410.1|Name=mRNA_H-paniculata_contig15887.3410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MAASTASEDALDVLLANLMLGTPQDHNRGRIISASDDDGDGDGDDGVKPR
RKSNVARASGNVDSDEHDPWKALSDQMNEEISRQIYAELDKQLDEQMMAE
LDKCQAEQTRQMDEELDRQLEEQLDAMLNASIDREAPRDGTYEYYSDEYG
YSSGEEENELENLPWSEGGEGGIGSLGLRQVPIEHGVSTNSNTIPGSILG
TPKYTQEELQRMVDNLYGDGTNEKVAGPGAWGKAKWRPGGKDKKGRK*
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mRNA from alignment at H-paniculata_contig15887:803..4666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15887.3410.1 ID=mRNA_H-paniculata_contig15887.3410.1|Name=mRNA_H-paniculata_contig15887.3410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3864bp|location=Sequence derived from alignment at H-paniculata_contig15887:803..4666- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCCAGTACAGCATCGGAAGACGCACTTGATGTCCTTTTGGCAAA
TTTAATGCTCGGTACGCCCCAAGATCACAACCGTGGCCGCATAATCAGTG
CTAGTGACGATGATGGTGATGGCGATGGCGATGACGGTGTTAAGCCCCGA
AGGAAATCAAACGTGGCACGGGCAAGCGGAAACGTCGATTCGGACGAGCA
TGACCCGTGGAAAGCACTTTCTGACCAGGTAAAGTGGTCCGTTCACGGGC
AACATCATCACATGTTTGTTTGATCGTGAACTTAGAATGACTAAATACTG
ATTGACTTTTGCAGAGTGTGGTCTGTTGGTCATTCTGCAGTTTCTGCCGT
GCATCTGTTCAGGTTCAAAGGTTCAAGACAGGAGGAGGTGTAGGACATGT
TCGGAAGCGCCGATTTTATCATCCCAAGGTGTTTTTTCTTGCTGATTTTT
ACCGTATCGCCAGGCTTTGAAAGTACAGCTTATTTGTTGTGAACATCCAA
GTTGACGTTTGAAAACAGTTGAATTTTAGAGTTATGGGTCCGCAACGTTC
AACATGACTACGGTAGTAGTCCTCCACTATGTTCAACGCCCGGGATTTGG
CGTGTTTGTTTGGGTCATGTCCAAGCTGCAGATGTTCTGTACAAACAGGT
GGTGTCATAGACTTTAAAACTTGTGTACTGGTTAGCTCTCGCTGGCGTTT
GCAGCTTTTAGTAGTGAGGGTTGATGGTAATTACGTCATCTGCTCACAAT
ATCTTGAATAAATGTTTTTTGGGGTCGACCTGGACAATTTTTCAATCTCT
CTCAACCTTTCTACTCCCACACTCGTATAATCCCCGCATCGAAGACAGGA
AAAATCGACACATACAAATTGAGTACGGGGACAGGGAGCCACGTCTGTTC
AGACAGACAGTGAAGTACAGATAGTACATGTAGACCGCATAGACACGCAG
TTGGCATGATTCAGCCCACGAAGAAATATTTTCAGATGCCATTTTTATCC
TGAAACTGGATCCAAGGGCCAAAGGGTTTACCTTGAGCTACACTATTCAA
CTATTTGTTCATGCCGACACGCAAATGATGGTGGTTTGCGCACGTTCATC
ATCTCTCTCCCGTGTACTCAGATTCAAACGTTCCTGTCTCAAGTGGTCGT
TCGTAGCTCTGACATCCGTTTCAATCATATTACATTTGATACACAGACGG
TGAAGTATGAACTGCCTGACACGTGACGTGCTTTAGGTGTCCACATTACT
GTTGTGTTCAACGCAGTCGCCGGTGTGTTCATCATGAGGATGCGCGGGCC
GAAGAGGGAGTGTAAATTATCCCGAGATACGTGCCATATATTATCGTGCG
GTGGGGGCAACAGTCCCACTCGCAACAGTCCCACTCGCCCGTCAACGTTG
GAATTGACGTTCAGCACGCCATATGCGCCAAGCTGGATCATCACCTAGCC
CTGATAGGACCTAAATGCGACAGTTGGCTCGTAGCTTCATTCTCGTTGGT
GAGAATACGTGTTGGCCGACGCATATAGCCACATCACCGGACAGGTCAAA
ATCTCGGAAGAGCATCTCCTAACATGACTGTGTGCTCTGAACACGCTTAG
CCTAAGTAATCATCGCACTCTCATTTTCCAGGTTCGACTTTCCTGAAACA
GCCAAGGAGTACTTCGAGGAGTTTCGACGTGTTTGAGCGCTGCAGGCTTG
GGATGGGGCTCACCAAGCACTACATACAGTATTAGGATCATCACTATCAT
TGTTCGCCATGTACAGCCAGTATACCCCCATCTCACACCGGGAATTGCTC
TACCTGGAAAGCACGTGCATGTCTTGGATAAATTTGCTACCTGTCGTTAT
TTTGTCATGTTCAGATGAACGAGGAGATATCGCGCCAAATTTACGCTGAG
TTGGACAAGCAATTGGATGAGCAGATGATGGCGGAGTTGGACAAATGCCA
AGCCGAGCAAACCCGACAAATGGACGAAGAGCTGGATCGACAAGTGAGGA
TAGGATAGAAGTTGCCACCAACTGCTGTCCTTCACGCCACATGGACTTTT
GTTGCGGTATGTGTAAAGAGCAATAGTATGACGTGCCTACCTTTCAAGGG
GGCGAAAGCGCCAGCGATACAGCCACGGTGGTGCAGGAAAACACGTTTAG
ATGCGATATGCGATTGTATAATCTTCAATTTTGCGCGGCTTGTTCCGCCG
TTGTCGAGGAGAGCTGCTCGTTTTTCATTGCACAGGAAGGTTGAATATAC
ATAATTGCGCTCGTTTGCTACGAAACCTACGCCAAACACCGGAAGGGAAT
AGCTGAAAGCAACATGACATTTAAAAAAAACTGACACATCTCGCACAGCC
TTGGTTCATACCTTCAGCTACTGTATTTTCATTCTCGCATTCGTGACATT
CAATAGCACTGCAGTATACGCGCCCTTCCCACGTCAGGGTGTGTCTAGTG
ACGATTGCGTGATGGGCGACTTCATTTTTGGAACACGTGTGGGCTACTCT
GTCGCCCGTTTGTGTTTGTACTTTTCGACGAAATTACAGGCAAAAGCAAC
GCGAAGTATCACCTCAGACCAATGTCTTCGTCGACTTTGGTATTTCGGGT
AGGAATGCAATGCATTTTACCCTGTTGTTGCACCGCATGCCGCTGATGTT
TTGTTATCCATGTGTGTACGCTCAAGTCGTCAAACGCGAGCTTCACGGCG
TTCTCCTAACTCCATATTCCCGACTCTGCTGTGTTTTTGGCTTTTGCCGT
ATCAGCTCGAGGAGCAGTTGGATGCCATGCTGAATGCCAGCATTGACAGA
GAAGCCCCACGCGACGGTGAGTACCTACCTATCAACCCGTGTGCAGTCAG
ACAAGTTCCGCCGATTTGATGGAAACAACTATCCACCCACGTCAATCAGT
GAGGTGGTCACGGGGGGCACCCTACTTTTACAAATGATGCCACAGGCAAA
ATTCTCGCGCTGGTTTCGTTCTTGTCTCGTTCTTCTTTGTCGAGGGTAGA
CTGATCAGCCGAGATCTACGTGACTGCCGAAAGTACTAAAGCCTCAAAGT
AGCTAAAATTGAAAGATGCCGGCATTTGGAGTGGCGCCTGTAGTAAGAGT
ATAGGTAAAAAAATACAAGTAGGATAATGAGACCTAGCTTAAGACCGTTT
GAAACCCACTAGAGACGGAGCCACGCCTGGGGCATTATGTAAAAATACCG
CGCAGCCATAAAGTGCTGAGAAGTGTTTTATATCTCGCCAGAACGCTGCG
TGCCCATGAAGTATAATGGATACCTCACACACATGCCTATTATTTTTCTT
GAGGGAGGGGGGGTTATTTGGTTAATGTGTCGCGATCGACTCGCCATCCT
TGCACATTAAACAGACTCGCGAATTCCAATTTTCCTGGCGAGGGACAATT
CAATATCTGGCGATGTCAGTGATGCCGGCGCTCATATTACATTCATGGTG
TCGGCATGATAATTTGCCGCGCGATACAACTGCACTTGTACACTCCTAAA
GTCTCCAATGTCGGACTGTATACTTGATCTTCCTCCAGGCACGTACGAAT
ATTACTCAGATGAGTACGGCTATTCGTCAGGTGAGGAGGAAAATGAGCTA
GAGAACTTGCCATGGTCGGAAGGCGGGGAGGGAGGGATTGGATCGTTGGG
GCTTCGGCAGGTTCCGATTGAACACGGCGTATCCACCAACAGCAACACCA
TCCCAGGATCTATTCTGGGTACCCCCAAGTACACTCAAGAGGAACTACAA
CGAATGGTGGATAATTTATACGGCGATGGAACGAATGAAAAAGTTGCTGG
ACCTGGAGCTTGGGGAAAAGCAAAATGGCGTCCAGGAGGAAAGGACAAGA
AAGGCCGGAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15887:803..4666-

>mRNA_H-paniculata_contig15887.3410.1 ID=mRNA_H-paniculata_contig15887.3410.1|Name=mRNA_H-paniculata_contig15887.3410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig15887:803..4666- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCCAGTACAGCATCGGAAGACGCACTTGATGTCCTTTTGGCAAA
TTTAATGCTCGGTACGCCCCAAGATCACAACCGTGGCCGCATAATCAGTG
CTAGTGACGATGATGGTGATGGCGATGGCGATGACGGTGTTAAGCCCCGA
AGGAAATCAAACGTGGCACGGGCAAGCGGAAACGTCGATTCGGACGAGCA
TGACCCGTGGAAAGCACTTTCTGACCAGATGGCAGCCAGTACAGCATCGG
AAGACGCACTTGATGTCCTTTTGGCAAATTTAATGCTCGGTACGCCCCAA
GATCACAACCGTGGCCGCATAATCAGTGCTAGTGACGATGATGGTGATGG
CGATGGCGATGACGGTGTTAAGCCCCGAAGGAAATCAAACGTGGCACGGG
CAAGCGGAAACGTCGATTCGGACGAGCATGACCCGTGGAAAGCACTTTCT
GACCAGATGAACGAGGAGATATCGCGCCAAATTTACGCTGAGTTGGACAA
GCAATTGGATGAGCAGATGATGGCGGAGTTGGACAAATGCCAAGCCGAGC
AAACCCGACAAATGGACGAAGAGCTGGATCGACAAATGAACGAGGAGATA
TCGCGCCAAATTTACGCTGAGTTGGACAAGCAATTGGATGAGCAGATGAT
GGCGGAGTTGGACAAATGCCAAGCCGAGCAAACCCGACAAATGGACGAAG
AGCTGGATCGACAACTCGAGGAGCAGTTGGATGCCATGCTGAATGCCAGC
ATTGACAGAGAAGCCCCACGCGACGCTCGAGGAGCAGTTGGATGCCATGC
TGAATGCCAGCATTGACAGAGAAGCCCCACGCGACGGCACGTACGAATAT
TACTCAGATGAGTACGGCTATTCGTCAGGTGAGGAGGAAAATGAGCTAGA
GAACTTGCCATGGTCGGAAGGCGGGGAGGGAGGGATTGGATCGTTGGGGC
TTCGGCAGGTTCCGATTGAACACGGCGTATCCACCAACAGCAACACCATC
CCAGGATCTATTCTGGGTACCCCCAAGTACACTCAAGAGGAACTACAACG
AATGGTGGATAATTTATACGGCGATGGAACGAATGAAAAAGTTGCTGGAC
CTGGAGCTTGGGGAAAAGCAAAATGGCGTCCAGGAGGAAAGGACAAGAAA
GGCCGGAAGTAGGCACGTACGAATATTACTCAGATGAGTACGGCTATTCG
TCAGGTGAGGAGGAAAATGAGCTAGAGAACTTGCCATGGTCGGAAGGCGG
GGAGGGAGGGATTGGATCGTTGGGGCTTCGGCAGGTTCCGATTGAACACG
GCGTATCCACCAACAGCAACACCATCCCAGGATCTATTCTGGGTACCCCC
AAGTACACTCAAGAGGAACTACAACGAATGGTGGATAATTTATACGGCGA
TGGAACGAATGAAAAAGTTGCTGGACCTGGAGCTTGGGGAAAAGCAAAAT
GGCGTCCAGGAGGAAAGGACAAGAAAGGCCGGAAGTAG
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