mRNA_H-paniculata_contig15876.3404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15876.3404.1
Unique NamemRNA_H-paniculata_contig15876.3404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: D8LLB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.560e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   52 ELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            ELAQEAVMVKSVPV +G P +KG+DFN GRDLDGIMAAAMTTGFQ
Sbjct:   21 ELAQEAVMVKSVPVAEGTPIIKGFDFNTGRDLDGIMAAAMTTGFQ 65
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A0D2KG79_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KG79_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 2.320e-6
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   25 QSSDGRAPPELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQVCA 195
            Q   G  PP  A EAV+V +  +  G P ++GYDFN GRDLDG+M A +T+GFQ  A
Sbjct:    3 QQQQGALPPS-ATEAVLVPTETLPDG-PVIRGYDFNAGRDLDGLMGALLTSGFQASA 57
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A183TWP4_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183TWP4_TOXCA)

HSP 1 Score: 50.1 bits (118), Expect = 7.640e-6
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   52 ELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            ++AQ+AV+ KSVP+    P+++GYDFN+G D   +M + +TTGFQ
Sbjct:    9 DVAQDAVLRKSVPLSMDSPQIRGYDFNNGIDFGALMDSYLTTGFQ 53
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A2V0P2T9_9CHLO (Deoxyhypusine synthase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2T9_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.020e-5
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   49 PELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            P  AQ AV+V +  +    P +KGYDFN GRDLDG+MAA +T+GFQ
Sbjct:   13 PPAAQAAVLVPTETI-PDAPVIKGYDFNAGRDLDGLMAAMLTSGFQ 57
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A061R4D9_9CHLO (Deoxyhypusine synthase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R4D9_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.030e-5
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   49 PELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQVCA 195
            P+ A +AV+VKS  + +G   V G+DF+ GRDLDGIM A +T+GFQ  A
Sbjct:  143 PDSASQAVLVKSESLPEGTKTVCGWDFSAGRDLDGIMDAMLTSGFQATA 191
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A0B2W6K7_TOXCA (Putative deoxyhypusine synthase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W6K7_TOXCA)

HSP 1 Score: 50.1 bits (118), Expect = 1.710e-5
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   52 ELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            ++AQ+AV+ KSVP+    P+++GYDFN+G D   +M + +TTGFQ
Sbjct:    9 DVAQDAVLRKSVPLSTDSPQIRGYDFNNGIDFGALMDSYLTTGFQ 53
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A8C4FS10_9TELE (Deoxyhypusine synthase n=4 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4FS10_9TELE)

HSP 1 Score: 48.5 bits (114), Expect = 6.660e-5
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   40 RAPPELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            +APP +A+EAV+ +S  + + +P +KGYDFN G DL G++ + +TTGFQ
Sbjct:   25 QAPP-VAREAVLKESSSLPEDMPRIKGYDFNQGVDLRGLLRSYLTTGFQ 72
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A383VG55_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VG55_TETOB)

HSP 1 Score: 48.5 bits (114), Expect = 6.680e-5
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   58 AQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQVCA 195
            A EAV+V +  V  G P +KG+DFN GRDLD IMAA +T+GFQ  A
Sbjct:   10 AAEAVLVPTETVPDG-PIIKGHDFNKGRDLDSIMAAMITSGFQATA 54
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A6P7IHE2_9TELE (deoxyhypusine synthase n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IHE2_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 9.130e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   49 PELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            P +A EAV++ S  +   VP++KGYDFN G +L G++ + +TTGFQ
Sbjct:   32 PSVAMEAVLMPSCDLPDDVPKIKGYDFNQGVNLKGVLDSFLTTGFQ 77
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BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Match: A0A6G1QCS5_9TELE (Deoxyhypusine synthase n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1QCS5_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 9.360e-5
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   49 PELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLDGIMAAAMTTGFQ 186
            P +A EAV+  S  + + +P+++GYDFN G DL G++ + +TTGFQ
Sbjct:  411 PSVAMEAVLKPSCDLPEDMPKIRGYDFNQGVDLQGVLKSYLTTGFQ 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15876.3404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LLB6_ECTSI6.560e-1584.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0D2KG79_9CHLO2.320e-650.88Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A183TWP4_TOXCA7.640e-648.89Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A2V0P2T9_9CHLO1.020e-556.52Deoxyhypusine synthase n=1 Tax=Raphidocelis subcap... [more]
A0A061R4D9_9CHLO1.030e-553.06Deoxyhypusine synthase n=3 Tax=Tetraselmis sp. GSL... [more]
A0A0B2W6K7_TOXCA1.710e-548.89Putative deoxyhypusine synthase n=1 Tax=Toxocara c... [more]
A0A8C4FS10_9TELE6.660e-548.98Deoxyhypusine synthase n=4 Tax=Denticeps clupeoide... [more]
A0A383VG55_TETOB6.680e-558.70Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A6P7IHE2_9TELE9.130e-547.83deoxyhypusine synthase n=1 Tax=Parambassis ranga T... [more]
A0A6G1QCS5_9TELE9.360e-545.65Deoxyhypusine synthase n=1 Tax=Channa argus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15876contigH-paniculata_contig15876:5645..5839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog2880.D8LLB6
KEGG koko:K00809
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006464,GO:0006518,GO:0006576,GO:0006595,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008216,GO:0008284,GO:0008612,GO:0009058,GO:0009059,GO:0009308,GO:0009405,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0030234,GO:0032991,GO:0034038,GO:0034641,GO:0034645,GO:0036211,GO:0042127,GO:0042802,GO:0042803,GO:0043043,GO:0043085,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0051604,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090342,GO:0090343,GO:0097164,GO:0098772,GO:1901564,GO:1901566,GO:1901576,GO:1902494
EggNOG free text desc.peptidyl-lysine modification to peptidyl-hypusine
EggNOG OGsCOG1899@1,KOG2924@2759
EC2.5.1.46
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.9961877-CDS-H-paniculata_contig15876:5644..58391622929266.9961877-CDS-H-paniculata_contig15876:5644..5839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15876 5645..5839 +
1691480793.7365286-CDS-H-paniculata_contig15876:5644..58391691480793.7365286-CDS-H-paniculata_contig15876:5644..5839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15876 5645..5839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15876.3404.1prot_H-paniculata_contig15876.3404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15876 5645..5839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15876.3404.1

>prot_H-paniculata_contig15876.3404.1 ID=prot_H-paniculata_contig15876.3404.1|Name=mRNA_H-paniculata_contig15876.3404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MSKETSQTQSSDGRAPPELAQEAVMVKSVPVGKGVPEVKGYDFNHGRDLD
GIMAAAMTTGFQVCA
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mRNA from alignment at H-paniculata_contig15876:5645..5839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15876.3404.1 ID=mRNA_H-paniculata_contig15876.3404.1|Name=mRNA_H-paniculata_contig15876.3404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig15876:5645..5839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAAGGAAACGTCCCAAACACAATCGTCTGATGGTAGGGCCCCGCC
TGAGCTTGCCCAGGAAGCGGTGATGGTCAAGTCTGTGCCGGTCGGAAAGG
GCGTGCCTGAGGTGAAAGGCTACGACTTCAATCATGGAAGAGACCTTGAT
GGCATTATGGCTGCTGCGATGACTACTGGCTTTCAGGTTTGTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig15876:5645..5839+

>mRNA_H-paniculata_contig15876.3404.1 ID=mRNA_H-paniculata_contig15876.3404.1|Name=mRNA_H-paniculata_contig15876.3404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig15876:5645..5839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAAGGAAACGTCCCAAACACAATCGTCTGATGGTAGGGCCCCGCC
TGAGCTTGCCCAGGAAGCGGTGATGGTCAAGTCTGTGCCGGTCGGAAAGG
GCGTGCCTGAGGTGAAAGGCTACGACTTCAATCATGGAAGAGACCTTGAT
GGCATTATGGCTGCTGCGATGACTACTGGCTTTCAGGTTTGTGCAATGTC
GAAGGAAACGTCCCAAACACAATCGTCTGATGGTAGGGCCCCGCCTGAGC
TTGCCCAGGAAGCGGTGATGGTCAAGTCTGTGCCGGTCGGAAAGGGCGTG
CCTGAGGTGAAAGGCTACGACTTCAATCATGGAAGAGACCTTGATGGCAT
TATGGCTGCTGCGATGACTACTGGCTTTCAGGTTTGTGCA
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