mRNA_H-paniculata_contig15844.3391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.780e-74 Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFF 357
SFTPGSCSLTAYKLTPQGFEWGKAHRD TAGAQGYAPTHYEKVQMLLSDRFLGFFMVP+DDRWNYNFMGV+HSVGMKY+LKLDNPKGFYHELHRPSHFLNFTSMEDVE AAEADHEDFF
Sbjct: 2329 SFTPGSCSLTAYKLTPQGFEWGKAHRDATAGAQGYAPTHYEKVQMLLSDRFLGFFMVPEDDRWNYNFMGVSHSVGMKYALKLDNPKGFYHELHRPSHFLNFTSMEDVEQAAEADHEDFF 2447
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S2SUH9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUH9_9STRA) HSP 1 Score: 195 bits (496), Expect = 6.600e-62 Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRD-VTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGSCSLTAYKLTP GFEWG+ +R+ + QGY YEKVQMLLSDRFLGFFMVP D WNYNFMGV H+VGMKY LKL+NP+ FYHE HRPSHF+NF +ME+VE AAEADHEDF+N
Sbjct: 47 SFTPGSCSLTAYKLTPSGFEWGQKNRESLGQNPQGYGSGMYEKVQMLLSDRFLGFFMVPGDGIWNYNFMGVKHAVGMKYDLKLENPREFYHEFHRPSHFMNFATMEEVEQAAEADHEDFYN 167
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK) HSP 1 Score: 210 bits (534), Expect = 1.310e-60 Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGSCSLTAYKLTPQGFEWGKA+R A QGYAPTHYEKVQMLLSDRFLGFFMVP+DD WNYNF GVNHS MKYSLKL NPK +YHE HRP+HFLNF ++E+VE AAEADHED+F+
Sbjct: 1812 SFTPGSCSLTAYKLTPQGFEWGKANRGQGANPQGYAPTHYEKVQMLLSDRFLGFFMVPEDDVWNYNFNGVNHSQTMKYSLKLANPKEYYHEKHRPAHFLNFAAIEEVEAAAEADHEDYFS 1931
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S2STE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STE8_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.640e-60 Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRD-VTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGSCSLTAYKLTP GFEWG+ +R+ + QGY YEKVQMLLSDRFLGFFMVP D WNYNFMGV H+VGMKY LKL+NP+ FYHE HRPSHF+NF +ME+VE AAEADHEDF+N
Sbjct: 150 SFTPGSCSLTAYKLTPSGFEWGQKNRESLGQNPQGYGSGMYEKVQMLLSDRFLGFFMVPGDGIWNYNFMGVKHAVGMKYDLKLENPREFYHEFHRPSHFMNFATMEEVEQAAEADHEDFYN 270
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.980e-56 Identity = 92/119 (77.31%), Postives = 100/119 (84.03%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFF 357
SFTPGSCSLTAYKLT QG EWGKA+RD AQGY+P HYEKVQMLLSDRF+GFFMVPDD+RWNYNFMGV+HS GMKY LKL NPK FY E+HRPSHFLNFT+ME E EAD +D F
Sbjct: 2263 SFTPGSCSLTAYKLTQQGLEWGKANRDGAGAAQGYSPVHYEKVQMLLSDRFMGFFMVPDDERWNYNFMGVSHSAGMKYRLKLANPKEFYAEVHRPSHFLNFTAMETDEAGVEADIDDNF 2381
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S2APL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APL4_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.120e-54 Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVT----AGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFF 357
SFTPGSCSLTAYKLTP G+EWG+ HRD T A QGY YEKVQMLLSDRFLGFFMVP D WNYNFMGV HSVG+KY LKL NP+ +YHE HR +HF NFT+ME+VE AAEADHEDFF
Sbjct: 2563 SFTPGSCSLTAYKLTPVGYEWGQKHRDATGSNPADRQGYGSQMYEKVQMLLSDRFLGFFMVPSDGVWNYNFMGVQHSVGLKYDLKLGNPREYYHEAHRSAHFNNFTNMEEVEQAAEADHEDFF 2685
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S2G3M0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G3M0_9STRA) HSP 1 Score: 186 bits (472), Expect = 4.230e-54 Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTA-GAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGSCSLTAYKLTPQG+EWG+ +R+ QGY YEKVQMLLSDRF GFFMVP WNYNFMGV HS GMKY LKLDNPK FY E HRP+HF+NF +ME+VE AAEADHED+F+
Sbjct: 421 SFTPGSCSLTAYKLTPQGYEWGQKNRESQGQNPQGYGSQMYEKVQMLLSDRFHGFFMVPSTGVWNYNFMGVQHSAGMKYDLKLDNPKEFYAEAHRPAHFMNFATMEEVEQAAEADHEDYFD 541
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A7S3SFK4_9SPIT (Hypothetical protein n=2 Tax=Alveolata TaxID=33630 RepID=A0A7S3SFK4_9SPIT) HSP 1 Score: 174 bits (440), Expect = 5.610e-54 Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGS SLTAY++TPQGF+WGK+++D G+ PTH EKVQMLLSD FLGFFMVPD+ WNYNFMG H+V MKYSL ++NP+ FYHE HRP+HFLNFT E+ A ADHED FN
Sbjct: 6 SFTPGSVSLTAYRITPQGFQWGKSNKDTGPNPAGFLPTHAEKVQMLLSDIFLGFFMVPDNSLWNYNFMGQKHNVTMKYSLCVENPREFYHECHRPAHFLNFTQQEEAG-AEGADHEDHFN 124
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: A0A446Y2R9_TRITD (PROCT domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446Y2R9_TRITD) HSP 1 Score: 174 bits (442), Expect = 9.010e-54 Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFFN 360
SFTPGSCSLTAYKLTP G+EW + ++D + QGY PTHYEKVQMLLSDRFLGF+MVPD+ WNYNFMGV H MKYS+KL P+ FYHE HRP+HFL F+++E+ E AE D ED F+
Sbjct: 43 SFTPGSCSLTAYKLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGE-VAEGDREDTFS 161
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Match: UPI0006D92CEA (pre-mRNA-processing-splicing factor 8-like n=2 Tax=Sarcopterygii TaxID=8287 RepID=UPI0006D92CEA) HSP 1 Score: 172 bits (437), Expect = 1.510e-53 Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1 SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRFLGFFMVPDDDRWNYNFMGVNHSVGMKYSLKLDNPKGFYHELHRPSHFLNFTSMEDVEHAAEADHEDFF 357
SFTPGSC+LTAYKLTP G+EWG+ + D +GY P+HYE+VQMLLSDRFLGFFMVP WNYNFMGV H MKY L+L NPK FYHE+HRPSHFLNF S+++ E AD ED +
Sbjct: 4 SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPSQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFASLQEGE-VYSADREDMY 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15844.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15844.3391.1 >prot_H-paniculata_contig15844.3391.1 ID=prot_H-paniculata_contig15844.3391.1|Name=mRNA_H-paniculata_contig15844.3391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp SFTPGSCSLTAYKLTPQGFEWGKAHRDVTAGAQGYAPTHYEKVQMLLSDRback to top mRNA from alignment at H-paniculata_contig15844:2257..3395- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15844.3391.1 ID=mRNA_H-paniculata_contig15844.3391.1|Name=mRNA_H-paniculata_contig15844.3391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1139bp|location=Sequence derived from alignment at H-paniculata_contig15844:2257..3395- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15844:2257..3395- >mRNA_H-paniculata_contig15844.3391.1 ID=mRNA_H-paniculata_contig15844.3391.1|Name=mRNA_H-paniculata_contig15844.3391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig15844:2257..3395- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |