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Homology
BLAST of mRNA_H-paniculata_contig15831.3389.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.100e-12 Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 2
Query: 80 ELHLMVRFAHRFAVGEDPVMSQPTTVNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATV 274
+L L+VR AHR+A GED V+S P +V+LS LV G++L+ A EI+LTGG +L+SRTQRLKW++AT
Sbjct: 1211 DLTLLVRLAHRYAKGEDAVLSLPASVDLSRLVLGHTLVKATEIALTGGGALSSRTQRLKWTSATT 1275
BLAST of mRNA_H-paniculata_contig15831.3389.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 3.550e-12 Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 2
Query: 80 ELHLMVRFAHRFAVGEDPVMSQPTTVNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATV 274
+L L+VR AHR+A GED V+S P +V+LS LV G++L+ A EI+LTGG +L+SRTQRLKW++ T
Sbjct: 1178 DLTLLVRLAHRYAKGEDAVLSLPASVDLSRLVLGHTLVKATEIALTGGGALSSRTQRLKWTSTTA 1242
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 77.8 |
| Seed ortholog evalue | 7.3e-12 |
| Seed eggNOG ortholog | 2880.D7FJT1 |
| KEGG ko | ko:K01191,ko:K12311 |
| KEGG Reaction | R08717,R08718 |
| KEGG Pathway | ko00511,ko04142,map00511,map04142 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575 |
| EggNOG free text desc. | mannose metabolic process |
| EggNOG OGs | KOG1959@1,KOG1959@2759 |
| EC | 3.2.1.24 |
| COG Functional cat. | G |
| CAZy | GH38 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04131 |
| Exons | 2 |
| Model size | 977 |
| Cds size | 681 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15831.3389.1 >prot_H-paniculata_contig15831.3389.1 ID=prot_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MAERDSDGTGKAGVIAGDTAVEEGEELHLMVRFAHRFAVGEDPVMSQPTT
VNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATVKPRCTGRDGS
SSSSSSSSSSISSGELGKVDLSEKNLSPKNARLHDGDNKGRSYTSPDVVR
LGAGRDAKGVRVREDATVGGAGASDGAGAGAGALGVSGSVLGAGEWNTNN
ERTADFVIAPMEIKTFRLKYVRRSAV* back to topmRNA from alignment at H-paniculata_contig15831:560..2946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig15831.3389.1 ID=mRNA_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-paniculata_contig15831:560..2946- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAATGGCGGAGAGAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCG
CGGGGGATACGGCGGTGGAGGAGGGAGAGGAGCTTCATCTTATGGTGAGC
GGGGATTTGTTGTCGTTGATGTTGATGTCGTTGCGTGTTCTGGTGAATAA
TACTCTGGTTTGTTGTTAGGGTTTGTACGAGAATAAAAGCGATCTATATC
TATATCTATATCTATACCTATATCTATATCTATATCTATATCTATATATT
GTCAATACGTGGTAATTCTTGCTTGATATCGGAGATGTAGGAAGCCCTCT
GTTGTCGGGGGGTGTTGCCACTTGTGCGCTATCTTATCTATAGCACCGTG
TATGTCAGGTCGCGTTTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAAAAGAGAAAAAGTGTGGTCTAGTATAGATCACACTTTTGAGTACCATA
AGGATAACGTTAAGTTCGATGTATGCAACTGGTATCTTCTCGTCGCCTCC
ACTCACTCTTGTGGGATGTGCAGGTTATTGATGGGTAGATGTCAATATGA
AGAAACGTTTAGCTGCATGCACGTCAACGTTACCTTCTGGCTCTGCGTAC
GTGTTGGTTTTGTATTACCCTTTGTCAAGTCTGGTTTAGATATCTAGGAA
GCTGGTCTCGACTTTGTTTTGACTTCACAATACATACATTACTGTGTAGT
GCAGTGCAGGTATGGGTGTGCTGCTACTCACACATACGTGCCATCCAAAA
TCATGCTCTCTTTCATCCCTTACAGTGTTTGAAATTGGCTGATTGATGAT
GACTGTTGGCTAAAGACCCGCAGCATATACTATTATTGTGTACATGTTTG
TTGTGATAAAATGAAATGTGTACGATGTTTTTTCAAATCTTTACACAGTT
ATAAAAGCAGTGCTTTCAGTGGCCCGCCATGTAATGTAATGTCATGCTAT
GCCTATTTATGTTACACACCTGCTACCTCCCTAGGTTGGTTGTTTTATGG
ATTCGGTCACTCGGCTGTTCTGAAATTTGCACCCCCCCCGAACAAACACG
AATACTTGCAAATGATTTCCACGAATAACTCAAAAGTATTCGCCTGAGTT
TTCAGAATGAGCGGACACATAGAACAAAATACTCATCCGTGTTCATTCGG
TTTTTACGAGTATTATCAGCAGTCGTGGATGGTCCAGGGCACATAGAATA
CACGAGCTCATTGTGAAACTTGAGGCGAATACTTTTGTTTTTTTGTGAAT
ATCATTTGCAAGTATTCGTATTTTGTTTGGAGGGTAGGAAACTGTTAGCA
TAACTGGAATCTGATTGAGAGTTATAATCACGTTTTCTTGTTCCACATTT
TCTACTCGTTGCACCGTCATCACCCAATGTTCACGTCATATTTCCATGAT
GTAGATGTTGTCCTCCTGGCTACCCCACTGCCACCGCACTGCCACTGCTC
GGTTCCCTCGCCATTCCTTCCTCCCTCCCAAAACATGGAACTGGATCCTA
CTAGGTCCGGTTCGCACACCGGTTCGCGGTGGGAGAAGACCCGGTAATGT
CTCAACCTACCACGGTAAACCTATCGGATCTCGTGCCCGGATACTCGTTG
CTGTTCGCGGAGGAGATTTCTCTGACCGGCGGCGCTTCGCTCGCATCCCG
CACGCAGCGGCTCAAATGGTCCACAGCGACAGTCAAGCCGCGGTGTACTG
GTAGAGACGGCAGCAGCAGTAGCAGCAGCAGTAGCAGCAGTAGCATCAGC
AGTGGAGAATTGGGGAAGGTTGATTTGTCGGAGAAAAATTTGTCTCCGAA
GAACGCCAGATTGCATGATGGCGATAACAAAGGCAGATCATACACCAGCC
CCGACGTGGTGCGGTTGGGCGCGGGGCGGGATGCGAAGGGCGTGAGGGTT
CGGGAGGATGCCACTGTTGGTGGTGCTGGTGCTAGCGATGGTGCTGGTGC
TGGTGCTGGTGCACTTGGTGTGTCTGGTTCGGTACTTGGAGCGGGGGAAT
GGAATACGAACAACGAGAGGACGGCTGATTTTGTCATAGCGCCAATGGAG
ATAAAAACATTTAGGCTCAAGTACGTTCGGCGTTCTGCGGTGTAAAAGGG
GCGTTTTGGTTGCTTGAGTGGGAGTTTATTCTTGGAGTAAAGGTCTAATA
TTGCATACACTTGTACACAGTTTGGGTCGTTTGAGGTTCTTGCGTGGAAT
TTTCCTGTACATTTAAAAGAAAAGCACATACGTACATATATATATATAAA
TCAGTGAATAGGTGACCACTGGAGTATGGCTTGCGCTACGTTCCCAATCT
TGTGTATCCGTTTTTGATGTTGAGGAGGGGTCAGCAACGTCTGCCACAGG
CTGTGTGGAGTTTAACAAAGGCATAAACAACCTCAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig15831:560..2946- >mRNA_H-paniculata_contig15831.3389.1 ID=mRNA_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig15831:560..2946- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGAGAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCGCGGG
GGATACGGCGGTGGAGGAGGGAGAGGAGCTTCATCTTATGATGGCGGAGA
GAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCGCGGGGGATACGGCG
GTGGAGGAGGGAGAGGAGCTTCATCTTATGGTCCGGTTCGCACACCGGTT
CGCGGTGGGAGAAGACCCGGTAATGTCTCAACCTACCACGGTAAACCTAT
CGGATCTCGTGCCCGGATACTCGTTGCTGTTCGCGGAGGAGATTTCTCTG
ACCGGCGGCGCTTCGCTCGCATCCCGCACGCAGCGGCTCAAATGGTCCAC
AGCGACAGTCAAGCCGCGGTGTACTGGTAGAGACGGCAGCAGCAGTAGCA
GCAGCAGTAGCAGCAGTAGCATCAGCAGTGGAGAATTGGGGAAGGTTGAT
TTGTCGGAGAAAAATTTGTCTCCGAAGAACGCCAGATTGCATGATGGCGA
TAACAAAGGCAGATCATACACCAGCCCCGACGTGGTGCGGTTGGGCGCGG
GGCGGGATGCGAAGGGCGTGAGGGTTCGGGAGGATGCCACTGTTGGTGGT
GCTGGTGCTAGCGATGGTGCTGGTGCTGGTGCTGGTGCACTTGGTGTGTC
TGGTTCGGTACTTGGAGCGGGGGAATGGAATACGAACAACGAGAGGACGG
CTGATTTTGTCATAGCGCCAATGGAGATAAAAACATTTAGGCTCAAGTAC
GTTCGGCGTTCTGCGGTGTAAGTCCGGTTCGCACACCGGTTCGCGGTGGG
AGAAGACCCGGTAATGTCTCAACCTACCACGGTAAACCTATCGGATCTCG
TGCCCGGATACTCGTTGCTGTTCGCGGAGGAGATTTCTCTGACCGGCGGC
GCTTCGCTCGCATCCCGCACGCAGCGGCTCAAATGGTCCACAGCGACAGT
CAAGCCGCGGTGTACTGGTAGAGACGGCAGCAGCAGTAGCAGCAGCAGTA
GCAGCAGTAGCATCAGCAGTGGAGAATTGGGGAAGGTTGATTTGTCGGAG
AAAAATTTGTCTCCGAAGAACGCCAGATTGCATGATGGCGATAACAAAGG
CAGATCATACACCAGCCCCGACGTGGTGCGGTTGGGCGCGGGGCGGGATG
CGAAGGGCGTGAGGGTTCGGGAGGATGCCACTGTTGGTGGTGCTGGTGCT
AGCGATGGTGCTGGTGCTGGTGCTGGTGCACTTGGTGTGTCTGGTTCGGT
ACTTGGAGCGGGGGAATGGAATACGAACAACGAGAGGACGGCTGATTTTG
TCATAGCGCCAATGGAGATAAAAACATTTAGGCTCAAGTACGTTCGGCGT
TCTGCGGTGTAA back to top
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