mRNA_H-paniculata_contig15828.3387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15828.3387.1
Unique NamemRNA_H-paniculata_contig15828.3387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 171 bits (433), Expect = 9.490e-46
Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR+   Y L++KSEAL  L++ +    + +G  +K LRSD+GGEYT KLF +FC E+ +    +A YTPQQNGVAER  R    MARS +    + R   AEAV  A+Y LNR PT+     TP + W G+ P + +L++FGC  +     Q R+KLDD+    +F+GYDE S +YR++NP  K + +SR+V FDE
Sbjct:  312 DDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 510          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 169 bits (429), Expect = 3.170e-45
Identity = 89/199 (44.72%), Postives = 124/199 (62.31%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR+   Y L++KSEAL  LK+ +    + +G  +K LRSD+GGEYT KLF +FC E+ +    +A YTPQQNGVAER  R    MARS +    + R   AEAV  A+Y LNR PT+     TP + W G+ P + + ++FGC  +       R+KLDD+    +F+GYDE S +YR++NP  K + +SR+V FDE
Sbjct:  417 DDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 615          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 169 bits (429), Expect = 3.300e-45
Identity = 89/199 (44.72%), Postives = 125/199 (62.81%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR+   Y L++KSEAL  L++ +    + +G  +K LRSD+GGEYT KLF +FC E+ +    +  YTPQQNGVAER  R    MARS +    + R   AEAV  A+Y LNR PT+     TP + W G+ P + +L++FGC  +     Q R+KLDD+    +F+GYDE S +YR++NP  K + +SR+V FDE
Sbjct: 1338 DDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 1536          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 157 bits (397), Expect = 1.100e-44
Identity = 82/200 (41.00%), Postives = 119/200 (59.50%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAE----NDVSAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDEE 588
            DDY+R    Y L++KSE     K  +  V   +G ++K LRSD+GGE+    F  FC E    + ++ AYTPQQNGV ER  R   +MARS +I  ++ ++  AEAV +A+Y LNR PT+     TP + W G+ P +D+ R+FGC  +V    Q+R KL++K   G+FLGY   S  Y   N + + +  SR+V+FDE+
Sbjct:   17 DDYTRMAWVYFLKEKSETFGIFKNFKLLVENQSGQKIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 166 bits (420), Expect = 5.140e-44
Identity = 84/199 (42.21%), Postives = 122/199 (61.31%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAE----NDVSAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DDY+R    + L++KS+      + +  V    GL+VKRLRSD G EYT   F++FC +    + ++  YTPQQNGV+ER  R   +MAR  +    + +   AEAV +++Y LN  PT+   G TP++ WHG TP +++L+VFGC  + +    +R KLD K+  G+FLGY   S  YRI+NP  K + +SRNV+FDE
Sbjct:  482 DDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 165 bits (417), Expect = 1.310e-43
Identity = 86/199 (43.22%), Postives = 126/199 (63.32%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DDYSR+   + L +KSEAL A K+ +    R  GL +  LRSD+GGEY    F+ +C EN +    +AAYTPQQNG+AER  R    MAR  M+  ++ RR   EAV  A++ LNR+P+      TP ++W    P ++++RVFGC  + +   ++R KLD+K+   VF+G  ++S +YR++NPE K + +SR+VRFDE
Sbjct:  526 DDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS)

HSP 1 Score: 160 bits (404), Expect = 5.180e-42
Identity = 84/199 (42.21%), Postives = 123/199 (61.81%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR+   + L +KSEAL   K+ + GV R +G  +  LR+D+GGEY  K F +FC EN +    +AAYTPQQNGVAER  R    M R  ++  ++ RR  AEAV  A++ LNR+P+      TP +KW    P ++ L++FGC  F +   ++R KLD+K+   V  G  ++S +YR++NP  K + +SR+V FDE
Sbjct:   53 DDFSRKCWTFLLTEKSEALQVFKEFKAGVERESGQPLVCLRTDRGGEYCSKAFEEFCRENGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILNRSPSAALGDITPEEKWSQHKPSVEYLKIFGCVAFALVPYERRIKLDEKSVKCVLFGLSKESKAYRLYNPVTKKIVISRDVHFDE 251          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 159 bits (403), Expect = 8.740e-42
Identity = 83/199 (41.71%), Postives = 122/199 (61.31%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAEN----DVSAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR    Y L QKSEA    KQ +      +G  +K LR+D+GGE+T   F ++C  N    +++A YTPQQNGVAER  R   +MARS +   ++     AEA+ +A++ LNR+PT+     TP++ WH   PK+D  ++FGCT +    SQ+R K D+K    +F+GY + S +YR+ +P  KS+ +SR+V FDE
Sbjct:  210 DDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 159 bits (403), Expect = 9.850e-42
Identity = 83/199 (41.71%), Postives = 122/199 (61.31%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAEN----DVSAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DD+SR    Y L QKSEA    KQ +      +G  +K LR+D+GGE+T   F ++C  N    +++A YTPQQNGVAER  R   +MARS +   ++     AEA+ +A++ LNR+PT+     TP++ WH   PK+D  ++FGCT +    SQ+R K D+K    +F+GY + S +YR+ +P  KS+ +SR+V FDE
Sbjct:  447 DDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645          
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 152 bits (383), Expect = 3.220e-41
Identity = 87/199 (43.72%), Postives = 114/199 (57.29%), Query Frame = 1
Query:    1 DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTGKLFRQFCAENDV----SAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQAEAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQSQQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDE 585
            DDYSR    Y L +K E L  LK+         G  +K LR+D GG+Y GK    F  E  +    +  Y+PQQNGV+ER  R   +MAR  +  AN+ +R  AEA  +A Y  NR PT+P    TPY  W    P L ++RVFGC  +   Q Q+RRKLDDKA  G+FLGYD  S  YRI+  ++K + +SR V+F+E
Sbjct:   34 DDYSRYSIIYLLSKKDEVLSKLKEYVAMTRNKFGRTLKVLRNDNGGKYIGKEIEDFLKEQGIVHQLTVPYSPQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNE 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15828.3387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3ACL1_HIBSY9.490e-4645.23Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WSU7_HIBSY3.170e-4544.72Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A2WXP0_HIBSY3.300e-4544.72Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2I0WJT9_9ASPA1.100e-4441.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA5.140e-4442.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2IM54_9BRAS1.310e-4343.22Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6D2I006_9BRAS5.180e-4242.21Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Y1QWW3_PRUDU8.740e-4241.71Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU9.850e-4241.71Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A4Y2LAF7_ARAVE3.220e-4143.72Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15828contigH-paniculata_contig15828:4632..5231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score149.8
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog3659.XP_004149950.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Pentatricopeptide repeat-containing protein
EggNOG OGs37K71@33090,3GFIF@35493,4JGHT@91835,COG2801@1,KOG0017@2759,KOG4197@1,KOG4197@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.4186342-CDS-H-paniculata_contig15828:4631..50391622929263.4186342-CDS-H-paniculata_contig15828:4631..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15828 4632..5039 -
1691480792.6338727-CDS-H-paniculata_contig15828:4631..50391691480792.6338727-CDS-H-paniculata_contig15828:4631..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15828 4632..5039 -
1622929263.430779-CDS-H-paniculata_contig15828:5051..52311622929263.430779-CDS-H-paniculata_contig15828:5051..5231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15828 5052..5231 -
1691480792.6457918-CDS-H-paniculata_contig15828:5051..52311691480792.6457918-CDS-H-paniculata_contig15828:5051..5231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15828 5052..5231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15828.3387.1prot_H-paniculata_contig15828.3387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15828 4632..5231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15828.3387.1

>prot_H-paniculata_contig15828.3387.1 ID=prot_H-paniculata_contig15828.3387.1|Name=mRNA_H-paniculata_contig15828.3387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
DDYSRRRKFYTLRQKSEALWALKQVERGVARANGLRVKRLRSDQGGEYTG
KLFRQFCAENDVSAAYTPQQNGVAERSWRKSFQMARSNMITANMGRRCQA
EAVCSAMYCLNRAPTRPYNGGTPYKKWHGETPKLDNLRVFGCTVFVMFQS
QQRRKLDDKAWAGVFLGYDEDSPSYRIHNPEHKSVQLSRNVRFDEE
back to top

mRNA from alignment at H-paniculata_contig15828:4632..5231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15828.3387.1 ID=mRNA_H-paniculata_contig15828.3387.1|Name=mRNA_H-paniculata_contig15828.3387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig15828:4632..5231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACTACAGCAGAAGGCGCAAATTCTATACCTTGCGACAAAAGTCGGA GGCGCTATGGGCCCTGAAGCAAGTCGAGAGGGGCGTAGCGAGAGCAAACG GTTTGCGGGTTAAGCGCCTTCGGTCGGATCAGGGAGGAGAATATACTGGA AAGCTTTTTAGGCAATTCTGCGCGGAGAATGTCATCACGTAGGACGTTTC TGCCGCCTACACACCGCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCA AAAGTTTCCAGATGGCAAGATCCAACATGATCACCGCCAACATGGGTCGT CGATGTCAGGCGGAAGCGGTGTGCTCGGCAATGTATTGCCTAAATCGCGC CCCGACGCGACCGTACAACGGAGGAACGCCGTACAAAAAATGGCACGGCG AGACACCAAAGTTGGACAACCTTCGCGTCTTCGGCTGCACGGTGTTTGTT ATGTTCCAGTCACAGCAGAGACGCAAGCTCGACGACAAAGCATGGGCGGG GGTGTTTCTGGGGTACGACGAGGACAGCCCGAGTTATCGCATACATAACC CGGAACACAAGAGCGTCCAATTAAGCAGGAACGTGAGATTTGACGAAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15828:4632..5231-

>mRNA_H-paniculata_contig15828.3387.1 ID=mRNA_H-paniculata_contig15828.3387.1|Name=mRNA_H-paniculata_contig15828.3387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig15828:4632..5231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACTACAGCAGAAGGCGCAAATTCTATACCTTGCGACAAAAGTCGGA
GGCGCTATGGGCCCTGAAGCAAGTCGAGAGGGGCGTAGCGAGAGCAAACG
GTTTGCGGGTTAAGCGCCTTCGGTCGGATCAGGGAGGAGAATATACTGGA
AAGCTTTTTAGGCAATTCTGCGCGGAGAATGACGACTACAGCAGAAGGCG
CAAATTCTATACCTTGCGACAAAAGTCGGAGGCGCTATGGGCCCTGAAGC
AAGTCGAGAGGGGCGTAGCGAGAGCAAACGGTTTGCGGGTTAAGCGCCTT
CGGTCGGATCAGGGAGGAGAATATACTGGAAAGCTTTTTAGGCAATTCTG
CGCGGAGAATGACGTTTCTGCCGCCTACACACCGCAACAAAACGGTGTGG
CGGAGCGCAGCTGGCGCAAAAGTTTCCAGATGGCAAGATCCAACATGATC
ACCGCCAACATGGGTCGTCGATGTCAGGCGGAAGCGGTGTGCTCGGCAAT
GTATTGCCTAAATCGCGCCCCGACGCGACCGTACAACGGAGGAACGCCGT
ACAAAAAATGGCACGGCGAGACACCAAAGTTGGACAACCTTCGCGTCTTC
GGCTGCACGGTGTTTGTTATGTTCCAGTCACAGCAGAGACGCAAGCTCGA
CGACAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAGCCCGA
GTTATCGCATACATAACCCGGAACACAAGAGCGTCCAATTAAGCAGGAAC
GTGAGATTTGACGAAGAGGACGTTTCTGCCGCCTACACACCGCAACAAAA
CGGTGTGGCGGAGCGCAGCTGGCGCAAAAGTTTCCAGATGGCAAGATCCA
ACATGATCACCGCCAACATGGGTCGTCGATGTCAGGCGGAAGCGGTGTGC
TCGGCAATGTATTGCCTAAATCGCGCCCCGACGCGACCGTACAACGGAGG
AACGCCGTACAAAAAATGGCACGGCGAGACACCAAAGTTGGACAACCTTC
GCGTCTTCGGCTGCACGGTGTTTGTTATGTTCCAGTCACAGCAGAGACGC
AAGCTCGACGACAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGA
CAGCCCGAGTTATCGCATACATAACCCGGAACACAAGAGCGTCCAATTAA
GCAGGAACGTGAGATTTGACGAAGAG
back to top