mRNA_H-paniculata_contig15827.3386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15827.3386.1
Unique NamemRNA_H-paniculata_contig15827.3386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15827.3386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15827contigH-paniculata_contig15827:3507..4420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size914
Cds size606
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.3250365-CDS-H-paniculata_contig15827:3506..41121622929263.3250365-CDS-H-paniculata_contig15827:3506..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15827 3507..4112 +
1691480792.6139035-CDS-H-paniculata_contig15827:3506..41121691480792.6139035-CDS-H-paniculata_contig15827:3506..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15827 3507..4112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.3577921-UTR-H-paniculata_contig15827:4112..44201622929263.3577921-UTR-H-paniculata_contig15827:4112..4420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15827 4113..4420 +
1691480792.622771-UTR-H-paniculata_contig15827:4112..44201691480792.622771-UTR-H-paniculata_contig15827:4112..4420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15827 4113..4420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15827.3386.1prot_H-paniculata_contig15827.3386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15827 3507..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15827.3386.1

>prot_H-paniculata_contig15827.3386.1 ID=prot_H-paniculata_contig15827.3386.1|Name=mRNA_H-paniculata_contig15827.3386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
FFECTNVKGRRYSSPPPPKPLSPRATHRCYFHLFSNKTQAHESSWADIYS
HYFPIRRSRPGHEISFDIANNKFRTNPHNFQQDYSVVHQPRRRPPALLPQ
NRKAVTPAPLIGKKHTLAMDIREASNRIFFTRSGGTIAKHTILRTPSKNY
TNTQVLMKIQKLLIYKMMGVLQKKGVILSIFEKSLLFKALCAQIATCFGL
S*
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mRNA from alignment at H-paniculata_contig15827:3507..4420+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15827.3386.1 ID=mRNA_H-paniculata_contig15827.3386.1|Name=mRNA_H-paniculata_contig15827.3386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=914bp|location=Sequence derived from alignment at H-paniculata_contig15827:3507..4420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTGAGTGTACCAACGTGAAAGGCCGGCGCTATTCCTCCCCGCCCCC
TCCCAAGCCGCTTTCTCCGCGCGCTACGCACCGCTGCTATTTCCACTTGT
TTTCCAACAAAACTCAAGCACACGAGAGCTCTTGGGCTGACATCTATTCC
CACTACTTTCCCATCAGACGCTCCAGGCCTGGCCACGAAATCTCTTTCGA
CATAGCTAACAACAAGTTTCGTACTAACCCTCACAACTTTCAGCAAGATT
ACTCTGTTGTTCACCAACCTCGACGGAGACCCCCCGCGCTCCTCCCTCAA
AATCGCAAGGCCGTAACTCCCGCGCCGCTCATCGGTAAAAAACACACTCT
AGCAATGGATATACGAGAGGCTTCTAACCGTATCTTCTTTACTAGGAGCG
GCGGCACCATCGCCAAACACACAATACTTAGAACTCCCTCCAAAAACTAC
ACAAATACACAGGTACTAATGAAAATACAGAAGCTACTTATATATAAAAT
GATGGGTGTTCTGCAAAAAAAAGGCGTTATTCTTTCGATTTTCGAGAAAA
GCTTGTTGTTTAAAGCGTTATGCGCACAAATAGCCACCTGCTTTGGTCTC
TCCTAACCCGACCGTTCCTGCGCGTCGCAGCCGTGGCTGTAGTACCTGGA
AGGCCCACACCTCGTCAGATGATGCATCGACAATCTACCCTAGAAACAGA
GGATCAACATCGGTCAACCACACCGCCCCGCTCCAGCGCCAAACAAAGTC
CCCCCTCGAGCCCGGCGCAAAAGCTCCCCACCTTCAGGCTGGTCCATGGC
GGCAGAGACAGTAATGTCTATGTACCAGCGCTGGACAACCAAAGCAAGAG
CTAACGATGTACTCAATATAAAACACAGCAACCCTCGCCCTCCCCCCCCC
TCACTTACTTCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig15827:3507..4420+

>mRNA_H-paniculata_contig15827.3386.1 ID=mRNA_H-paniculata_contig15827.3386.1|Name=mRNA_H-paniculata_contig15827.3386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig15827:3507..4420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTGAGTGTACCAACGTGAAAGGCCGGCGCTATTCCTCCCCGCCCCC
TCCCAAGCCGCTTTCTCCGCGCGCTACGCACCGCTGCTATTTCCACTTGT
TTTCCAACAAAACTCAAGCACACGAGAGCTCTTGGGCTGACATCTATTCC
CACTACTTTCCCATCAGACGCTCCAGGCCTGGCCACGAAATCTCTTTCGA
CATAGCTAACAACAAGTTTCGTACTAACCCTCACAACTTTCAGCAAGATT
ACTCTGTTGTTCACCAACCTCGACGGAGACCCCCCGCGCTCCTCCCTCAA
AATCGCAAGGCCGTAACTCCCGCGCCGCTCATCGGTAAAAAACACACTCT
AGCAATGGATATACGAGAGGCTTCTAACCGTATCTTCTTTACTAGGAGCG
GCGGCACCATCGCCAAACACACAATACTTAGAACTCCCTCCAAAAACTAC
ACAAATACACAGGTACTAATGAAAATACAGAAGCTACTTATATATAAAAT
GATGGGTGTTCTGCAAAAAAAAGGCGTTATTCTTTCGATTTTCGAGAAAA
GCTTGTTGTTTAAAGCGTTATGCGCACAAATAGCCACCTGCTTTGGTCTC
TCCTAATTTTTTGAGTGTACCAACGTGAAAGGCCGGCGCTATTCCTCCCC
GCCCCCTCCCAAGCCGCTTTCTCCGCGCGCTACGCACCGCTGCTATTTCC
ACTTGTTTTCCAACAAAACTCAAGCACACGAGAGCTCTTGGGCTGACATC
TATTCCCACTACTTTCCCATCAGACGCTCCAGGCCTGGCCACGAAATCTC
TTTCGACATAGCTAACAACAAGTTTCGTACTAACCCTCACAACTTTCAGC
AAGATTACTCTGTTGTTCACCAACCTCGACGGAGACCCCCCGCGCTCCTC
CCTCAAAATCGCAAGGCCGTAACTCCCGCGCCGCTCATCGGTAAAAAACA
CACTCTAGCAATGGATATACGAGAGGCTTCTAACCGTATCTTCTTTACTA
GGAGCGGCGGCACCATCGCCAAACACACAATACTTAGAACTCCCTCCAAA
AACTACACAAATACACAGGTACTAATGAAAATACAGAAGCTACTTATATA
TAAAATGATGGGTGTTCTGCAAAAAAAAGGCGTTATTCTTTCGATTTTCG
AGAAAAGCTTGTTGTTTAAAGCGTTATGCGCACAAATAGCCACCTGCTTT
GGTCTCTCCTAA
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