mRNA_H-paniculata_contig15805.3373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15805.3373.1
Unique NamemRNA_H-paniculata_contig15805.3373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15805.3373.1 vs. uniprot
Match: A0A6H5KT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT97_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.030e-19
Identity = 43/83 (51.81%), Postives = 66/83 (79.52%), Query Frame = 2 
Query:   59 ADRRRKKLQLPGLGGIAKGVAGLWDKVTEDHPAPLPVDKSLTHEERRRANVKLERQRRRSWQTNSIGEQHHVRAVLKLEEEKV 307
            ++RRR+ L    LGG+ KG+  +W+K++ DHP PLP+DK+LT E++R+ +++LERQRR  WQTNS+ EQH +R+VL+ +EEK+
Sbjct:  480 SERRRRGL----LGGLKKGMGVVWEKISADHPQPLPIDKTLTKEQQRQKHLRLERQRRNEWQTNSVAEQHVLRSVLQQQEEKI 558
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BLAST of mRNA_H-paniculata_contig15805.3373.1 vs. uniprot
Match: D7G224_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G224_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.380e-19
Identity = 44/83 (53.01%), Postives = 64/83 (77.11%), Query Frame = 2 
Query:   59 ADRRRKKLQLPGLGGIAKGVAGLWDKVTEDHPAPLPVDKSLTHEERRRANVKLERQRRRSWQTNSIGEQHHVRAVLKLEEEKV 307
            ++RRR+ L     GG+ KG+  +W+K+  DHP PLP+DK+LT E++R+ +++LERQRR  WQTNS+ EQH +R+VL+ EEEKV
Sbjct:  467 SERRRRGL----FGGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQQRQKHLRLERQRRNEWQTNSVAEQHVLRSVLQQEEEKV 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15805.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT97_9PHAE1.030e-1951.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G224_ECTSI1.380e-1953.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15805contigH-paniculata_contig15805:891..5749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size556
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15805.3373.1prot_H-paniculata_contig15805.3373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15805 1131..5742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.9091306-UTR-H-paniculata_contig15805:890..11301622929261.9091306-UTR-H-paniculata_contig15805:890..1130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15805 891..1130 -
1691480792.0173192-UTR-H-paniculata_contig15805:890..11301691480792.0173192-UTR-H-paniculata_contig15805:890..1130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15805 891..1130 -
1622929261.9861414-UTR-H-paniculata_contig15805:5742..57491622929261.9861414-UTR-H-paniculata_contig15805:5742..5749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15805 5743..5749 -
1691480792.0555382-UTR-H-paniculata_contig15805:5742..57491691480792.0555382-UTR-H-paniculata_contig15805:5742..5749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15805 5743..5749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.9250093-CDS-H-paniculata_contig15805:1130..11751622929261.9250093-CDS-H-paniculata_contig15805:1130..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 1131..1175 -
1691480792.030898-CDS-H-paniculata_contig15805:1130..11751691480792.030898-CDS-H-paniculata_contig15805:1130..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 1131..1175 -
1622929261.9442647-CDS-H-paniculata_contig15805:3975..40711622929261.9442647-CDS-H-paniculata_contig15805:3975..4071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 3976..4071 -
1691480792.038527-CDS-H-paniculata_contig15805:3975..40711691480792.038527-CDS-H-paniculata_contig15805:3975..4071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 3976..4071 -
1622929261.9628265-CDS-H-paniculata_contig15805:5574..57421622929261.9628265-CDS-H-paniculata_contig15805:5574..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 5575..5742 -
1691480792.0456226-CDS-H-paniculata_contig15805:5574..57421691480792.0456226-CDS-H-paniculata_contig15805:5574..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15805 5575..5742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15805.3373.1

>prot_H-paniculata_contig15805.3373.1 ID=prot_H-paniculata_contig15805.3373.1|Name=mRNA_H-paniculata_contig15805.3373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MRSRSLQSESGNSERESADRRRKKLQLPGLGGIAKGVAGLWDKVTEDHPA
PLPVDKSLTHEERRRANVKLERQRRRSWQTNSIGEQHHVRAVLKLEEEKV
YH*
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mRNA from alignment at H-paniculata_contig15805:891..5749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15805.3373.1 ID=mRNA_H-paniculata_contig15805.3373.1|Name=mRNA_H-paniculata_contig15805.3373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig15805:891..5749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCAGATGCGGTCGCGGAGCCTGCAAAGTGAGTCTGGTAACAGCGAGA
GAGAGAGTGCAGATCGGCGCCGAAAGAAGCTCCAGCTTCCTGGGCTGGGA
GGAATCGCGAAGGGAGTCGCTGGTTTGTGGGATAAGGTCACGGAAGATCA
CCCGGCGCCGCTTCCCGTGGACAAGGTAAATACAGTGATTAATAAGGGGC
CGATTTTTTTTTTGGGCGTTTTTTTTTTTTTTTTACGTGTTTTTGGTCAT
TTTGTTGTACCGGCGTCAATATTTTGCCCTCAACGTTTAGAGACAATATA
AATTAACACGATGCACAAAATGATTTCTCGACTTTTTTTCTAGGGCGCTC
ATAATGAACCAAGTTAAGGGCTTACCGGTCGTCGGGGGTCCTACGTCTAT
AGACTCTGGAAGTGCTCGTGTTGTTCATTTGTTTTGTTTTTTAAACCGTG
CTGAAATACACTGCGCACAATGCCTAGCTTTTGCATTTTGAATTTAAAAG
AAATCTTTGCGCTAGGGTCGAAAAACATGTTTTTTTCGGGGGGGGGGGTG
TTATCCAACGTAATTAGTGCCCCAAATGAAAACGTTTTGGTCTTGTAGAG
CTACTGCATTAAAACATGGTAGCAAGTGTCATATGATCGAACTATTCCCT
ATGCCAACACCTACCGATCTCAAAAGATTTTAGCGAATTTGACCTAAATG
CGGGTTTAATTCGTCGAAAAATCTATGAAAAAAAAAATTCGGCCTTTGAC
CACTATATATTGAATAACTGTTTACCGTGAACATATTGGACAACATGTGG
AGAAAACGCCGCAAGAAGGTTGCTTCTTTGGCTATTTATCTTCTTGTTTG
GACCCCCAATTTATCGTCGTTCAGAAGAGCTGACCTTAACGAGTATGGAT
GAAAACATGTTGATGGAGTACATGCGTTTATGTGTAGACATGGTTAAAAA
AGTTCGATAAAGTACTAATGTTTTGTACATGGTGTCGGCCGAGTAGCCAT
TGATAACTTGAATGTACTCACGAAGACGGACGATTCTGGTAGGATGGTAT
TCGCTTTTACCTTTCTCGAAATGCGTTGATAATCCTTTTGGGCGGGTGGC
GGAGGCTTTTGTCCGGACAAGAGACGAATCTGACGAACAAGGAATTAACA
AGACGACGTCAAGCAACTTGAATTTTTTTTTTTGTGAAATACTTGAATTG
TTTTCGACTGCAGTCTTGCTCGTCGTGCACAGGAAAAACCATGGCTTATA
TCATGGAAACGTATGTCTTGTTTAGTATTTATTCTGTATTGACTTGACTT
TTTACAAAACGTAACTGATGTATCGATGGGAAGGAATATTGTGAATATGA
ATGACCAGTGTTTTTCGAGTTCTCATGTACGGGTCGGTATGCTCTGACGA
GCTGTGGAAAACTCCGCCTGCTGTATTTAGCACTTTCAACGTCGTGTTGT
GTTGTGTCGGGCTGTACCAGTGTGTGTGTCTATGTGCTTGTGTGTTGATT
GGTAACATGTTGGGTTTGGTCATGTTGGGTTGGATCTATCTGTTTTCAGG
ATCTTCTCGTGGTAAATATAGAAGGTTTCAAGGTTCCAAGGTTGACAACC
TGTATTTTTTCTCCCTTGGGTGTAGGTTCGATTTATTCGTTATGTCTCAT
TTGTACTTTATTTTGCTGCACAAATCAGTCCCTCACTCACGAGGAACGAC
GGCGGGCTAATGTGAAGCTAGAGCGACAGCGACGTCGATCCTGGCAGACG
AACAGCATTGGCGAGCAGCATCACGTAAGTACTATTACGGAGGAACATAA
TAATCAGGAGCATTTTTTTTTGTTTGGTTTTTTGGAAACTGTTTTTTTTT
TTTTTTCCCCCGTTGGTCTAGAGATTTTCGCTTCTAGCTGAAAACAAAAA
CACACTCTATAAACGCTTGCACAGGCATGCAGCAACCGATTGGTGCATAT
CGTATTGCATGAGTTACACCTCAAAATGTCAATTTTCTAATTTGCTCCTG
ATTATTATGTTCCTCCGTAATACTGAATATGTAATGTTAATGCACAGCTG
GTTAAGGTAATATACTTGAGAGGAACTTACTCCAATTATCTCAAGCTAAA
TCTAGCGTTCTTGTCAAGGACCCGGATGGCAGTCACTCCAGGGTCGCTAT
CTGTCTGTTCTTGTAATGAGCGCTGCGCCTTCTCGAATAGATGAAAGCCA
ACCTCTTTTCTGCTGAGCAACATGAATATAGCCATCTCCATCGACGGGGA
GTTTCACCATTTGTAGCTCGCACCAACAGTGTCATCTCTTCCCCTCTCGA
TCATTTGATTACCGAATGGATCGTGTTTTTACTGCTGGTCTATTCGTCGT
CGTTCTGCAGTAGCTGTTCAGCTCCGCATCCCATGTAGCTTTTGAAAAGT
GTCGTCGACTTGACGGGGTGTGTTGCGTCGTCTACAAGCGAGTCTCTTCG
TCAAACGTACGCGTTCCCTGTGAAACACACATGATATCTCCCCCCTATCC
TACCCCTGTCTTGACTGAGTCGAAAAAAAACACTTGCAAAATAAACACAT
TTTAGCTAATTAGAGAGTTTTGGCAGAATATATATATATATATTTTGGGG
ATTTTTTGAGATTTGAATCAGGGTAAACGGAAAAAAACCTGAGTAATTTG
AATTTCCAACAGTTGTCAGGATTTACGCGCGGCGTAACCCATGATGACGT
GAGTGGCAAATTGGGTGAAGATATATACCAACGGGGCTGCCGTTGCACTG
TAGATGAGGAGTATGTCATACACCAGTGTGAAAGTGCCTCCACGGCTTGG
GCAATAAGCGTAGGCGAAGATAAATCGAGCTTTTATAGCATTTTTATAGT
CTGTTGTTCCGTACCCAAAACCGGTTGATCTAAACTTGAGCAGGCTGATA
TTGTAATGGTAACATTTTTTGAAGGGCCGAATCCGTGTATGTGGCAAAAT
GCTGGGATGACTTGAGTTTAGGGGTGAAAGGCCAATCAAAATCGGTTATA
GCTGGATTTCTGCGAAATCTATTCAAGTAGAGCATCCTAATTAAAAATAA
TTAGGGGTAGAGCACTGTGCAAGCAATGGGGAATTTTTTCCGCGCCTGTT
CTGTGCTCTACCGCTACTCAGTCTTGCTGCACCGTGGAGGTATGGGACTG
CATAATGCAGATGGGTTATCCTGCTCTGAGCCATCCCTGCCGTGCATACC
GCTGTGGACATGATAGCGCTACAGTACGACTAACATTCCAAATAGCGGCA
AAAATTTGTTGGTATTGTTTTTGAGGCTACACAGACCGTTCTTGAACTGT
CTTCTCTTTTTTTTTCACATCCACATACATGCAGTGTGTAGAAGTGACAT
TTTTTGCTTTAGCAACACACAGAGACGAGGTGGAGAGTCGATTGGGGCTG
GCCCAATAGCACCCACTGGTCGCGTGTAGCTTGTACAAGGTCCACCAGTA
CGATAGTCGACAGACAGAAGTATTCGTATGGGTTTTTGAATAAAAAGCCA
ACCGTCATAATAGTCGCCACAGTACAGTCAGTTGTCAATGCAAAAATTAG
GCCATCGCACCGAATCGCACTGTTCTTTTGCCCGAGCGTTGAAATATCGT
TTCTAGACCTAACCGCGGGCATCTCAACAACACCCATGTCCCCGAGTGCT
TTCGCAAGATGGATTGGTGGCCTGTAGCGACAAAACAGCTACGTTGTGGT
TGGTGTGTAATTAGTTGGCCCTTCATTTGTCTATTCTGTAGCTGTGTATG
TGTGTCGGGTTGATATGTTGCGGTTCGCGAGCCCTGAGCCTGGGCCACAG
CAAATGACTGAGGGAAAGAGTTCGTTTCCTGGCTCGCAACTCTGAGTCCG
TGCTCAGGGCAATAATAAGGAAAAGTGTCATGTATCACACCCAAAACCTG
ACGCTGAGTCAAAAGCTGAGCCCTTTTTTTTTTGCCGAAATTCTATTATT
GACATACTCCCAAGTTTTACCCTGGTAAGAATTTTTCTGAATAAAGATAA
ATACGCGGACGTCACACGTTTTCGTAGTTGTGATATATTTTTGTACTGGA
CGCTCGCACGCGAGTACGTATTGTATGTACCTGTAGTGAGCGAAGCAAGC
CTTTGCGAAACGTCGTGAGCCGATGTGTTTTGTTTGTCGACGACAAAGCA
CGGACTGCGCTGGTGGATAACCGTGGCTATACTCGTTAATGAAAGAGACT
GTAACGCCCGTTCTTGTGGGTTGCTGCCTCGCAGTCTCGAACGCATTTTG
ATTATTAGGAAGTCGTGCATTAGAAACCAACGTTTTTCGTATTTCTCTTA
GTTGGGACATTTTAGTACCCCTCCCGTCGCGCGCCCGTTTTTCCGGTATT
ACTTGAACGGTTTTTCTCTGCTTTTCGTCAGAGCACTGCAGTATGTCTTC
GAGTTTTGATCGTGTTGCGTCCCCCCTGTACGACACGAATCCATAGGTGA
CATGCATGCCAGAGTTTTTGAGGGATGCAGGACAAACAATATCTCGTTTG
CTTCTTTATTTGTGTCTGCGTGCCTCTCTTCCACCTGAACGTAATCTATT
CTCGTCCTCTTTTACTATGGTCAGGTGCGTGCGGTGCTTAAACTCGAAGA
AGAGAAGGTGTATCACTAGAGGAGGGTCGATGGCGGCAGGGTATACTCGT
CGTTTCGATGTTGACGTATGATGGTTTTCATGCCAAAAAGGGCATTCGAG
GGGGGGAAACTATTCAAACGTTTATTGGGGGTTGCGATTTCGTGGGCGTC
TCGGTGTTTCGCGGAAATGTTCCCTTGCACGGCGAGAGAAGGGGGAGGGT
GGGGGCGTGGTTCACATCCCGGTTTGGGGTAAGTATAGGTCGAGCGTCCG
TCATTGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig15805:891..5749-

>mRNA_H-paniculata_contig15805.3373.1 ID=mRNA_H-paniculata_contig15805.3373.1|Name=mRNA_H-paniculata_contig15805.3373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig15805:891..5749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTCGCGGAGCCTGCAAAGTGAGTCTGGTAACAGCGAGAGAGAGAG
TGCAGATCGGCGCCGAAAGAAGCTCCAGCTTCCTGGGCTGGGAGGAATCG
CGAAGGGAGTCGCTGGTTTGTGGGATAAGGTCACGGAAGATCACCCGGCG
CCGCTTCCCGTGGACAAGATGCGGTCGCGGAGCCTGCAAAGTGAGTCTGG
TAACAGCGAGAGAGAGAGTGCAGATCGGCGCCGAAAGAAGCTCCAGCTTC
CTGGGCTGGGAGGAATCGCGAAGGGAGTCGCTGGTTTGTGGGATAAGGTC
ACGGAAGATCACCCGGCGCCGCTTCCCGTGGACAAGTCCCTCACTCACGA
GGAACGACGGCGGGCTAATGTGAAGCTAGAGCGACAGCGACGTCGATCCT
GGCAGACGAACAGCATTGGCGAGCAGCATCACTCCCTCACTCACGAGGAA
CGACGGCGGGCTAATGTGAAGCTAGAGCGACAGCGACGTCGATCCTGGCA
GACGAACAGCATTGGCGAGCAGCATCACGTGCGTGCGGTGCTTAAACTCG
AAGAAGAGAAGGTGTATCACTAGGTGCGTGCGGTGCTTAAACTCGAAGAA
GAGAAGGTGTATCACTAG
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