mRNA_H-paniculata_contig15792.3361.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15792.3361.1
Unique NamemRNA_H-paniculata_contig15792.3361.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.120e-18
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   19 QAQHHEAWLEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            QA HH+AW EVYR+WKDKR+R+GKPL+RR+WPVT  NDTDPHKV
Sbjct:  141 QAVHHDAWTEVYRFWKDKRSRMGKPLLRRFWPVTPSNDTDPHKV 184
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A7S1TPQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPQ6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.470e-13
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 KTTQTQAQHHEAWLEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            K TQ +  H   W +VY+YW++KR RL +PL+R+YWPVTS ND +PHKV
Sbjct:  133 KFTQNRPTHGRMWADVYKYWEEKRKRLKRPLLRKYWPVTSVNDNNPHKV 181
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.760e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   25 QHHEAWLEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            Q+   W +VY YWK +R +LGKPL++R+WP TS NDTDPHKV
Sbjct:  152 QYQAVWNDVYSYWKQRRQKLGKPLLQRFWPTTSANDTDPHKV 193
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A7R9Y8G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8G1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.780e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    4 KTTQTQAQHHEAWLEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            K  Q +  H   W +VY+YW  KR RL +PL+R++WPVTS ND +PHKV
Sbjct:  154 KFAQHRPSHGRMWADVYQYWHAKRHRLKRPLLRKFWPVTSVNDNNPHKV 202
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A7S3Q9L6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9L6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.650e-9
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   46 EVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            EVY YW +KR++L KPL+R+YWPVT+ NDT+PH V
Sbjct:  293 EVYNYWVNKRSKLKKPLLRKYWPVTASNDTNPHMV 327
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A812YBZ4_9DINO (Epc2 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YBZ4_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   52 YRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            YRYW  KR +LGKPL+R+YWP TS ND DPH V
Sbjct:  174 YRYWDRKRRKLGKPLLRKYWPQTSANDVDPHAV 206
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: B7FQA0_PHATC (Enhancer of polycomb-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQA0_PHATC)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   43 LEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            LEVY YW  KR++L +PL+RR+WPVTS +DT+PH V
Sbjct:  201 LEVYNYWLHKRSKLKRPLLRRFWPVTSSDDTNPHLV 236
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A1Z5JVP8_FISSO (Enhancer of polycomb-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVP8_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   46 EVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            EVY YW  KR++L +PL+RRYWPVTS +DT+PH V
Sbjct:  201 EVYNYWVSKRSKLKRPLLRRYWPVTSTDDTNPHLV 235
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A7S2EGN1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGN1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   46 EVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            +VY YW  KR++L +PL+R+YWPVTS NDT+PH V
Sbjct:  140 DVYNYWVQKRSKLKRPLLRKYWPVTSSNDTNPHMV 174
[Close]
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Match: A0A7S1ZJ62_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJ62_TRICV)

HSP 1 Score: 57.8 bits (138), Expect = 2.180e-8
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   46 EVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV 150
            +VY YW +KR++L KPL+R YWPVTS NDT+PH+V
Sbjct:   16 DVYGYWVNKRSKLKKPLLRWYWPVTSSNDTNPHQV 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15792.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB0_ECTSI5.120e-1877.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1TPQ6_9STRA6.470e-1357.14Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YT95_9STRA4.760e-1261.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Y8G1_9STRA2.780e-1053.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3Q9L6_9STRA4.650e-965.71Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A812YBZ4_9DINO1.620e-869.70Epc2 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
B7FQA0_PHATC1.620e-863.89Enhancer of polycomb-like protein n=2 Tax=Phaeodac... [more]
A0A1Z5JVP8_FISSO1.620e-865.71Enhancer of polycomb-like protein n=2 Tax=Fistulif... [more]
A0A7S2EGN1_9STRA1.620e-862.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1ZJ62_TRICV2.180e-865.71Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15792contigH-paniculata_contig15792:5661..5819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D8LLB0
Preferred nameEPC1
KEGG koko:K11322
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.internal peptidyl-lysine acetylation
EggNOG OGsKOG2261@1,KOG2261@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.1468391-CDS-H-paniculata_contig15792:5660..58191622929260.1468391-CDS-H-paniculata_contig15792:5660..5819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 5661..5819 -
1691480791.3343368-CDS-H-paniculata_contig15792:5660..58191691480791.3343368-CDS-H-paniculata_contig15792:5660..5819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 5661..5819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15792.3361.1prot_H-paniculata_contig15792.3361.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15792 5661..5819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15792.3361.1

>prot_H-paniculata_contig15792.3361.1 ID=prot_H-paniculata_contig15792.3361.1|Name=mRNA_H-paniculata_contig15792.3361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
QKTTQTQAQHHEAWLEVYRYWKDKRTRLGKPLVRRYWPVTSPNDTDPHKV
RY*
back to top

mRNA from alignment at H-paniculata_contig15792:5661..5819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15792.3361.1 ID=mRNA_H-paniculata_contig15792.3361.1|Name=mRNA_H-paniculata_contig15792.3361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig15792:5661..5819- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAACAACACAAACACAGGCACAGCACCACGAGGCGTGGTTAGAGGT
GTACAGGTACTGGAAGGATAAAAGGACCCGGCTGGGCAAGCCGTTGGTGC
GACGGTACTGGCCCGTTACGTCTCCGAACGACACCGATCCGCACAAGGTG
AGGTATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15792:5661..5819-

>mRNA_H-paniculata_contig15792.3361.1 ID=mRNA_H-paniculata_contig15792.3361.1|Name=mRNA_H-paniculata_contig15792.3361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig15792:5661..5819- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAACAACACAAACACAGGCACAGCACCACGAGGCGTGGTTAGAGGT
GTACAGGTACTGGAAGGATAAAAGGACCCGGCTGGGCAAGCCGTTGGTGC
GACGGTACTGGCCCGTTACGTCTCCGAACGACACCGATCCGCACAAGGTG
AGGTATTGACAAAAAACAACACAAACACAGGCACAGCACCACGAGGCGTG
GTTAGAGGTGTACAGGTACTGGAAGGATAAAAGGACCCGGCTGGGCAAGC
CGTTGGTGCGACGGTACTGGCCCGTTACGTCTCCGAACGACACCGATCCG
CACAAGGTGAGGTATTGA
back to top