mRNA_H-paniculata_contig15746.3333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15746.3333.1
Unique NamemRNA_H-paniculata_contig15746.3333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A6H5KIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.140e-24
Identity = 84/165 (50.91%), Postives = 100/165 (60.61%), Query Frame = 3 
Query:  426 GSSADAQPKYSGEGDSPGVEMRSRTAGGAMVGGRRGDEDLLGRGGGNKGVERLGDLLSVYER-NGDTQGERKNGA---AVTSTSATAGTKSTTSSQMGPERH-AAAKALTSTKVALPHHLAPMAGLEDKLRKMRLDMENGRGEGDAPWGAFGRPRTTLGGAKAHK 905
            G SA AQPK+SG GD  GV       G   VG     +D   RGGG    +R  +  ++  R NG   G + +G     V+  SA+AG KS     +G ERH AAAKALT+TKVALPHHL+PM GLEDKL++MR DM+N  G  DAPW AFGRPRT L G K HK
Sbjct:  229 GGSAQAQPKHSGAGDRGGVGR-----GIGAVGADGDHDDRPSRGGGIHESKRPWETDAIRGRTNGLETGSKDSGGDPPGVSQASASAGAKS--GPVIGNERHHAAAKALTNTKVALPHHLSPMTGLEDKLKRMRSDMQNENG--DAPWDAFGRPRTALLGTKQHK 384
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: D7G2H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H2_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.270e-23
Identity = 96/211 (45.50%), Postives = 110/211 (52.13%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESSSDDVAAREVGIDTNHAGKAVPSELAKARTESTANALASRANNTTEG------AGGERASTLSGSGGGVAEDCSRSQALTSLGAGSSADAQPKYSGEGDSPGVEMRSRTAGGAMVGGRRGDEDLLGRGGGNKGVERLGDLLSVYERNGD 620
            E PLLDSRFPNVS KGRGYQIRAMT+GPE W ELRKVSVWQT  ALQQEMEAKMI+AGEKES+       E+       G+    E AKA +       A+ A N   G      AGG+RA    G  GG                  SA AQPK+SG GD  GV    R  G     G   D D   RGGG   ++R  +  ++  R  D
Sbjct:  501 EQPLLDSRFPNVSAKGRGYQIRAMTKGPEGWEELRKVSVWQTTAALQQEMEAKMIKAGEKESAETRAGGSELD-----GGQQEGEEHAKATSTMMIEGGAASAANEQGGSRGAGWAGGDRADPAIGGSGGXFPXXXXXXX--------SAQAQPKHSGAGDRGGV---GRGIGAVGADGNNHD-DRPSRGGGVHELKRPWETGAIRGRTND 694
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A836C9I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.260e-14
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESSS 197
            E PLLDSRFP+VS +GRGYQIRA   G +DW  LRKVSVWQTA ALQ+EM+A+M +AG   SS+
Sbjct:  489 EQPLLDSRFPDVSGRGRGYQIRATPTGRDDWPGLRKVSVWQTAAALQREMDARMAKAGAPPSSA 552
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A7S2D1T8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1T8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.940e-13
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESSSDDVAAREVGIDTNHAGKAVPSEL 266
            E PLLDS+FP+VS KGRGYQI+   EG  DW  LRKVS+WQ+ +A+++EME ++ +  +  ++  D  A  VG     A KA+  EL
Sbjct:  460 EQPLLDSKFPDVSQKGRGYQIQVYPEGSSDWPSLRKVSIWQSKDAMEEEMEERVAKEDQARAAGGDAFATAVGAADEQASKALAEEL 546
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A7R9UA68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA68_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.930e-12
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGE 182
            E  LLDS FP+VS KGRGYQIRA  EG + W ELRK+S+WQT EA++ +ME  M +A E
Sbjct:   37 EQMLLDSTFPDVSRKGRGYQIRAFPEGVDGWPELRKISIWQTTEAMKADMEKAMAKAEE 95
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: F0Y4X5_AURAN (Rad51 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4X5_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 5.920e-11
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:    3 GEHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESS 194
            GE PLLDSRFP+VS+KGRGY I +  EG   W +LRKVS+WQTA A+  E+EA+  +A + E S
Sbjct:  447 GEQPLLDSRFPDVSSKGRGYLIASYAEGTPAWPQLRKVSIWQTASAMAAELEARGAKASDSEPS 510
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A812VEK8_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEK8_SYMMI)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-10
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESSSDDVAA 212
            E+PLLDSRFP+VS KGRGYQ+++  +G + W ELR+V++WQT  AL+QE   + ++  E +  ++  AA
Sbjct:   13 ENPLLDSRFPDVSAKGRGYQLQSYPDGIDGWAELRRVTIWQTVAALEQEFRDRAVRLAEAKKYTESSAA 81
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A7S4D7F3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F3_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.160e-10
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:    6 EHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMI--QAGEKE 188
            + PLLDS+FP+VS KGRGYQ++A + G E W ELRKVSVWQT  +LQ E++A+M   +AG K+
Sbjct:  531 DQPLLDSQFPDVSGKGRGYQVKAYSAGAEGWPELRKVSVWQTQASLQAEIQARMAAKEAGRKQ 593
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A8J2S959_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S959_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-10
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:    3 GEHPLLDSRFPNVSTKGRGYQIRAMTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGE 182
            GE PLLDSRFP+VS KGRGY + +  +G   W +LRKVS+WQTA A+Q E+EA+ ++A +
Sbjct:  526 GEQPLLDSRFPDVSAKGRGYLVSSYGDGTMTWPQLRKVSIWQTAAAMQSELEARGVKASD 585
[Close]
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Match: A0A7S3HBV8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.680e-10
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:    3 GEHPLLDSRFPNVSTKGRGYQIRAMTEGP-EDWRELRKVSVWQTAEALQQEMEAK 164
            GE PLLDSRFP+VS KGRGYQ++A  +G  EDW  LRKVS+WQT  AL+QE   K
Sbjct:  433 GESPLLDSRFPDVSGKGRGYQLQAYNDGDREDWPSLRKVSIWQTVNALEQEFREK 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15746.3333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KIB2_9PHAE6.140e-2450.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H2_ECTSI1.270e-2345.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9I4_9STRA7.260e-1467.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D1T8_9STRA3.940e-1347.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UA68_9STRA1.930e-1261.02Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
F0Y4X5_AURAN5.920e-1157.81Rad51 domain-containing protein n=1 Tax=Aureococcu... [more]
A0A812VEK8_SYMMI1.020e-1047.83Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S4D7F3_HETAK1.160e-1058.73Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A8J2S959_9STRA1.390e-1056.67Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3HBV8_9STRA2.680e-1065.45Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15746contigH-paniculata_contig15746:1063..5622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue4e-12
Seed eggNOG ortholog2880.D7G2H2
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNDG@1,2QVEC@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005960.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1572
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15746.3333.1prot_H-paniculata_contig15746.3333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15746 1728..4958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.9617372-UTR-H-paniculata_contig15746:1062..10901622929255.9617372-UTR-H-paniculata_contig15746:1062..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 1063..1090 +
1691480789.8815444-UTR-H-paniculata_contig15746:1062..10901691480789.8815444-UTR-H-paniculata_contig15746:1062..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 1063..1090 +
1622929255.9753647-UTR-H-paniculata_contig15746:1681..17271622929255.9753647-UTR-H-paniculata_contig15746:1681..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 1682..1727 +
1691480789.8944414-UTR-H-paniculata_contig15746:1681..17271691480789.8944414-UTR-H-paniculata_contig15746:1681..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 1682..1727 +
1622929256.0547872-UTR-H-paniculata_contig15746:4958..56221622929256.0547872-UTR-H-paniculata_contig15746:4958..5622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 4959..5622 +
1691480789.9562778-UTR-H-paniculata_contig15746:4958..56221691480789.9562778-UTR-H-paniculata_contig15746:4958..5622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15746 4959..5622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.9884765-CDS-H-paniculata_contig15746:1727..18261622929255.9884765-CDS-H-paniculata_contig15746:1727..1826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 1728..1826 +
1691480789.9016306-CDS-H-paniculata_contig15746:1727..18261691480789.9016306-CDS-H-paniculata_contig15746:1727..1826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 1728..1826 +
1622929256.000341-CDS-H-paniculata_contig15746:2320..25341622929256.000341-CDS-H-paniculata_contig15746:2320..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 2321..2534 +
1691480789.9091375-CDS-H-paniculata_contig15746:2320..25341691480789.9091375-CDS-H-paniculata_contig15746:2320..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 2321..2534 +
1622929256.0136704-CDS-H-paniculata_contig15746:2858..30861622929256.0136704-CDS-H-paniculata_contig15746:2858..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 2859..3086 +
1691480789.923154-CDS-H-paniculata_contig15746:2858..30861691480789.923154-CDS-H-paniculata_contig15746:2858..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 2859..3086 +
1622929256.0294013-CDS-H-paniculata_contig15746:3722..38561622929256.0294013-CDS-H-paniculata_contig15746:3722..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 3723..3856 +
1691480789.9350915-CDS-H-paniculata_contig15746:3722..38561691480789.9350915-CDS-H-paniculata_contig15746:3722..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 3723..3856 +
1622929256.0435748-CDS-H-paniculata_contig15746:4799..49581622929256.0435748-CDS-H-paniculata_contig15746:4799..4958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 4800..4958 +
1691480789.9456594-CDS-H-paniculata_contig15746:4799..49581691480789.9456594-CDS-H-paniculata_contig15746:4799..4958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15746 4800..4958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15746.3333.1

>prot_H-paniculata_contig15746.3333.1 ID=prot_H-paniculata_contig15746.3333.1|Name=mRNA_H-paniculata_contig15746.3333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
MTEGPEDWRELRKVSVWQTAEALQQEMEAKMIQAGEKESSSDDVAAREVG
IDTNHAGKAVPSELAKARTESTANALASRANNTTEGAGGERASTLSGSGG
GVAEDCSRSQALTSLGAGSSADAQPKYSGEGDSPGVEMRSRTAGGAMVGG
RRGDEDLLGRGGGNKGVERLGDLLSVYERNGDTQGERKNGAAVTSTSATA
GTKSTTSSQMGPERHAAAKALTSTKVALPHHLAPMAGLEDKLRKMRLDME
NGRGEGDAPWGAFGRPRTTLGGAKAHK*
back to top

mRNA from alignment at H-paniculata_contig15746:1063..5622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15746.3333.1 ID=mRNA_H-paniculata_contig15746.3333.1|Name=mRNA_H-paniculata_contig15746.3333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4560bp|location=Sequence derived from alignment at H-paniculata_contig15746:1063..5622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGAACACCCTTTGTTGGATTCCAGGTGACGGTTGACGTTTCTCGAT
AAGAATCGTCAGTCACATTAAGATTAAATATTTGTGAAAGAACGCATGTA
AGCTTCTTTATACATGTTATATTTGTAAGTTTTGGGCATTTGCATTAGAT
TGTCTCGAAAGAGACATTGATATCTGTAAAACGCCAACGCCAATATTCCC
ACGTTCTGAATACATTCTTATTAGTAACTCTGAGAAATAGAAAAAAAAGG
ACTGGATACCCGTGGCATAGAGCTATCCTTTTCGCCAGTACTGCAGTGGC
AATTTCACAGCGTTCTGGTGCATCACGCATCAGTAAAGCCTTTTCAACAA
AATCTCTTTGCTATCCACCCGGTCACGAACGCACTTCAGCTATGTATTTT
CACACGTAGGCTTGAACCTGAGCAAGAGGTAATGTTTCGAACCATACCTT
CCGACGTCGGGCCTGACGAAAGAGACACTCGATATAGGATCTGTAGAAGG
AAAGGTAGTCTCACTCACCGACCCTTGGGAAAACAAGATGGTCGTTTATC
GTTTTATGCCTCCGACTAAACCGACTACAGTTAAAGCTGCTTTTCTTGTC
CATGTGCTTTCCGGTGCAGATTCCCTAATGTTTCGACAAAGGGCCGAGGG
TACCAAATCCGTGCGATGACAGAGGGACCGGAGGATTGGAGAGAGCTCAG
AAAGGTGTCCGTCTGGCAAACCGCAGAAGCGTTGCAGCAGGAGATGGAGG
CGAAAATGATCCAGGTCTGCGATCGACGGGGATCCACGCGGAGGAGGAAG
CTGTGCGCACGCTTTTTTTTTTTTCTTTGCTTGACACTTGCGAGTAAAGT
GTGATACTGAGTGCAGCGTGTTCACGATGGACGAAAGTGGTAAAATTAAC
GACAGTCGCTATCAATATATGTGTTGAATTGCACCGCGCTGAGTAAAGTA
CTATGGTCATGTGCCATATAGTTATTATACACCCATTTCTCCTTATTTCC
CTGCTGCGGTCGGCTCCGCGCCCAGCCGAGTGCAATTATCACGGTCAGTT
AGTTAGAGAGTGTCAGGCCACAAACTATGACCCTCGAAGGTAGAAGATAT
CGATTCCTTGTTGCCATGTTTATATACCGTAGCCGTGCGGTTTATCCCCC
CCCCCCGTCAAACGAGCTCCGACAGGAGTATTACGTTGCAGGATGACCAT
ATCGGTGTGATACTCCTCCCTCTCACTTCCCGCCCTCGAAAATTCCTCTG
TCTCCCAGGCCGGAGAAAAAGAGAGTTCCAGCGACGATGTAGCGGCGAGA
GAAGTTGGCATCGACACGAATCACGCCGGAAAGGCAGTCCCATCGGAGCT
GGCAAAAGCACGGACCGAGAGTACTGCAAATGCCTTGGCGTCTCGAGCGA
ATAATACCACGGAGGGTGCTGGTGGTGAACGAGCTTCCACTTTGAGCGGA
AGCGGCGGGGGTGTTGCTGAAGGTATTCTCATTTTACGGCTGTCACCCAT
AAGAAACGAAGAAGTGTAACCCATGGTCTAGCTTAAGGCTCCCGCGAAGA
AAATTCCTGTAACATTATTGCGACATGCATCCCGTGTTTGTGTTCAACAT
GGTGCGATGGATGAGGCATACAGACGAGTCGCCAAGGTGCCAAGGACGAA
GAAAACCAGCATCCACCCACAACCCCGCTACGCGGACCACCTGCGCCCCG
CCGCCGCTGCGTGTTTGCAAGAGGCACTAACCTCCTCCCTAGTAAAGCTC
AATTGGCCCTGCCTCCCCTACGGTGGACTTTCTTACGGTGTATCAGATTG
TTCTCGATCTCAAGCATTGACGAGTCTGGGAGCGGGAAGCAGCGCTGATG
CGCAGCCGAAATATTCAGGAGAGGGCGATTCCCCTGGTGTGGAGATGAGA
AGTAGAACAGCAGGAGGGGCGATGGTAGGGGGGAGGCGAGGAGACGAAGA
TTTGCTGGGGAGGGGCGGCGGCAACAAAGGCGTCGAACGACTAGGGGATT
TGTTATCAGTCTATGAGCGTAATGGTGAGCACGAAGTCGACGATCAGTCC
TCTAGTAGATAAACTGTTAGGGAGAGCGCGAAATTATCGTTTTAATCAAA
GGTTAGCATGGCCGACGGAACGTCTGCCTGGAGTTGATTTGAACTACAGA
TAGCGGGCTAAATAGGAATACATGGATAGTGACTGTGACTCTCATACTGG
TGTAGAGTGACGAGGCGATGTGATGAATATAATTTGACGGACAGCATGTT
TAGCCCAGTGATGAAAAGAGTTGCGCTGCAGGGACTTCCGCAACAAAGGC
GCTCAAACATTCGAGTTTTGGGTTTGTTCTTCTGCTTACGTGATATCTCC
TTATTTTCAATTGCTTGTGCAATACTTTTTACTTCGTAATCCCGACACGG
AAAGTCGTCATCTCTCCTCGCTTGAAGTATGTCTCGTTCTTCAAGCCTTG
AAAATAACGCACACCTGGGTCTAGTGGAACTGGATCTAGTGGAACAAGTG
AGTGGTGTGATCAGAGGTTTTCCCTACCCCTACGGGTGAATCGCTTAAGA
AAGTTATCCCTTCCCCATGATACCCGACGTGATACATTGAGTCTTGGTCC
AGCATTACACGCCAAGTAGGTCAACGATCGTTCTCTGTGATGAAAAATGT
ACCCAATTAGGAGATACTCAAGGAGAGCGCAAAAACGGGGCAGCGGTTAC
ATCGACCAGCGCTACAGCTGGGACGAAAAGCACCACTTCTTCTCAGATGG
GCCCTGAGCGACACGCGGCCGCAAAAGCATTGACCAGCACGAAGGTAAAG
TCGAGCAAACGAACATGAAGTACTCTCTGTCAAATGTTGTGGAGTATATA
TACTACTTCAAAGCTCAAAGGTTTACGGGTATCATCCATATTCGAATGTG
TCATATCAGAAGATATGCAAATTGATGTAGTGGATTGTAACGTTTGGCAA
TGTCATTGATGTGCCGGATTTTCGTAGCGAAAAGCACTACACCGGCATTA
TTCGAACGGCCCAAACGTCCACAACAAAGGAGACCCTGTCCATACCTTCC
CTGTAGACACTCGCGGGATGCTTGAGTACAATGTTGATTAATGTACTTCT
CTTCGCTGATTGAAGGCGCCTGTGGACGTAGGTCGGAGATATAACCGTGA
AAATAACCGTTCTGTCTCGTTTCCAACATCCTACCGCTATATAGTATTGT
TGTATAGAGACAAGTGAATATATTATTTGTTCATGTTTTCGCCCTCTACA
ATTTGGTCGGTTCGTTTATGGAATCACTCACTCAGCAGTATGACTAAGGC
GCGTGACGAGGCCGGCTACGGGGGGGGAGGAGATACTCATGTTTTGCATG
CTGTAGTCATTGCACCAGTGATCACGCGTCGTCGGGAGGACGAACGGGCT
ATGGCAGGGAGTAAGTGTTTTGAGCCGATTTGTTTTACGAAGTAAGCTGG
TCCTGGGAGCAGCTCGGTACAGCATATTTCCTCCTTAAACAGGAAAGTCA
TTCCCAATCGTGTATTGTGCAGGGGTGTGTGAACACATGCCAATAAATAG
GTTGATTTTAAGTTTTTTAGCCGCTTTGCGGAGCAGCGCTGGTTAACCCG
CCCCCCCCCATCTACCGGACTCTGACTCTGACGTTGACTTAGTGTATGTC
GGGGGGTGTTGAATCTAATTTTTGGCATATTTTCTACTTGTACTTAAACG
TGTCCCTCCTCTCCGCTCCTTTCCGTTTCCCCTGCAGGTTGCCCTCCCGC
ATCATTTGGCGCCGATGGCCGGCTTGGAAGACAAGCTCCGCAAGATGCGA
CTGGACATGGAAAACGGGAGGGGGGAAGGCGATGCTCCTTGGGGTGCTTT
TGGCAGGCCGCGAACGACTCTCGGTGGAGCCAAGGCTCACAAATAAACGA
GCTTGAAGCCAAGTGCATTGGGCAAGAAGAATGAGCAGTTTGTCTGAGGG
GGCGGGGCATATGGAGATCAGTAAAGTCACCCACCCGCCTGATACGCACG
AGTTATCCATGTGGTATACTGTACTATTACAGTAGTAGAGGCAGTACAGG
TGTCAAGGTTGGTTGTGAGTAAGGTCCCACTGAAAGTGAAAAATCATGTC
GAGCTCAAGTTGGTGCTGCTGTGCTGCTCTTGGAGCTGTTTTCGTAGAAG
AGAGCGCGCGTAGCGTACCCAGCTAAAGCTGAGAGCACTGTAGAATATGA
CTGAGTGCGGAAGCAGACGGGTGGCGGGTATATTGTGTGTAGTTCGTGTT
GCTGTGTTTTTTTGTAACGTCCAGCGAGACCTGTTTCCCCTTCAACGGTC
TACAGTAGGTAGATATTTTTTGTGCGTCGCGGGCACCCACCTGTATTCTG
CACCCGCACTGGGAGCGGATGTCATCGATTGTTGCGTCTGTGATGTCTAC
GTTGGGTACACTACCTGCTCCGCTGCTGCTGTCAACGCTGGAGGACTACA
GAGAGGACCCGATTGTACAATGTTCCATGTTCTTGGGACTGTCGTTGACC
GCTTTTTGTCTGAGAATATATACCGTGAACTCTGAGTGAATATGATGTCT
GTGGGCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15746:1063..5622+

>mRNA_H-paniculata_contig15746.3333.1 ID=mRNA_H-paniculata_contig15746.3333.1|Name=mRNA_H-paniculata_contig15746.3333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig15746:1063..5622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGAGGGACCGGAGGATTGGAGAGAGCTCAGAAAGGTGTCCGTCTG
GCAAACCGCAGAAGCGTTGCAGCAGGAGATGGAGGCGAAAATGATCCAGA
TGACAGAGGGACCGGAGGATTGGAGAGAGCTCAGAAAGGTGTCCGTCTGG
CAAACCGCAGAAGCGTTGCAGCAGGAGATGGAGGCGAAAATGATCCAGGC
CGGAGAAAAAGAGAGTTCCAGCGACGATGTAGCGGCGAGAGAAGTTGGCA
TCGACACGAATCACGCCGGAAAGGCAGTCCCATCGGAGCTGGCAAAAGCA
CGGACCGAGAGTACTGCAAATGCCTTGGCGTCTCGAGCGAATAATACCAC
GGAGGGTGCTGGTGGTGAACGAGCTTCCACTTTGAGCGGAAGCGGCGGGG
GTGTTGCTGAAGGCCGGAGAAAAAGAGAGTTCCAGCGACGATGTAGCGGC
GAGAGAAGTTGGCATCGACACGAATCACGCCGGAAAGGCAGTCCCATCGG
AGCTGGCAAAAGCACGGACCGAGAGTACTGCAAATGCCTTGGCGTCTCGA
GCGAATAATACCACGGAGGGTGCTGGTGGTGAACGAGCTTCCACTTTGAG
CGGAAGCGGCGGGGGTGTTGCTGAAGATTGTTCTCGATCTCAAGCATTGA
CGAGTCTGGGAGCGGGAAGCAGCGCTGATGCGCAGCCGAAATATTCAGGA
GAGGGCGATTCCCCTGGTGTGGAGATGAGAAGTAGAACAGCAGGAGGGGC
GATGGTAGGGGGGAGGCGAGGAGACGAAGATTTGCTGGGGAGGGGCGGCG
GCAACAAAGGCGTCGAACGACTAGGGGATTTGTTATCAGTCTATGAGCGT
AATGATTGTTCTCGATCTCAAGCATTGACGAGTCTGGGAGCGGGAAGCAG
CGCTGATGCGCAGCCGAAATATTCAGGAGAGGGCGATTCCCCTGGTGTGG
AGATGAGAAGTAGAACAGCAGGAGGGGCGATGGTAGGGGGGAGGCGAGGA
GACGAAGATTTGCTGGGGAGGGGCGGCGGCAACAAAGGCGTCGAACGACT
AGGGGATTTGTTATCAGTCTATGAGCGTAATGGAGATACTCAAGGAGAGC
GCAAAAACGGGGCAGCGGTTACATCGACCAGCGCTACAGCTGGGACGAAA
AGCACCACTTCTTCTCAGATGGGCCCTGAGCGACACGCGGCCGCAAAAGC
ATTGACCAGCACGAAGGAGATACTCAAGGAGAGCGCAAAAACGGGGCAGC
GGTTACATCGACCAGCGCTACAGCTGGGACGAAAAGCACCACTTCTTCTC
AGATGGGCCCTGAGCGACACGCGGCCGCAAAAGCATTGACCAGCACGAAG
GTTGCCCTCCCGCATCATTTGGCGCCGATGGCCGGCTTGGAAGACAAGCT
CCGCAAGATGCGACTGGACATGGAAAACGGGAGGGGGGAAGGCGATGCTC
CTTGGGGTGCTTTTGGCAGGCCGCGAACGACTCTCGGTGGAGCCAAGGCT
CACAAATAAGTTGCCCTCCCGCATCATTTGGCGCCGATGGCCGGCTTGGA
AGACAAGCTCCGCAAGATGCGACTGGACATGGAAAACGGGAGGGGGGAAG
GCGATGCTCCTTGGGGTGCTTTTGGCAGGCCGCGAACGACTCTCGGTGGA
GCCAAGGCTCACAAATAA
back to top