mRNA_H-paniculata_contig15738.3327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15738.3327.1
Unique NamemRNA_H-paniculata_contig15738.3327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.060e-20
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 GEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            G+MGD++  VDLG  R  V +  GRWHTCV++DN+ VKCFGV+T +DLGAGQLGLED  +RG    ++GD L
Sbjct:  341 GQMGDDMVGVDLGEGRHPVAVAAGRWHTCVLMDNDEVKCFGVNTVEDLGAGQLGLEDQISRGGSLDTIGDNL 412          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.520e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   10 EMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            +MGD++  VDLG  R  V +  GRWHTCV++DN+ VKCFG +T++DLG GQLGLED  NRG    ++GD L
Sbjct:  244 QMGDDMVAVDLGEGRHPVAVAAGRWHTCVLMDNDEVKCFGANTAEDLGGGQLGLEDTINRGGSLDTIGDNL 314          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A150FY78_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY78_GONPE)

HSP 1 Score: 80.5 bits (197), Expect = 8.550e-18
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDALEY 228
            PGEMGDNL  VDLGT RT   +  G +HTC VLDN   KC+G++     G G+LG  D  +RGD  G MGD+L Y
Sbjct:    8 PGEMGDNLFYVDLGTGRTVAALAAGAYHTCAVLDNGKAKCWGIN-----GNGRLGYGDTADRGDAPGEMGDSLPY 77          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A383F410_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383F410_9ZZZZ)

HSP 1 Score: 82.8 bits (203), Expect = 1.040e-17
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 GEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDALE 225
            GEMGD+LA VDLG+ RTA  I  G  HTC +LDN +VKC+G + S     GQLGL DD NRGD A  MGD L+
Sbjct:   22 GEMGDSLAIVDLGSGRTAKAIAAGNQHTCAILDNSSVKCWGANAS-----GQLGLGDDDNRGDGANEMGDDLD 89          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: UPI001056704E (hypothetical protein n=1 Tax=Legionella yabuuchiae TaxID=376727 RepID=UPI001056704E)

HSP 1 Score: 84.0 bits (206), Expect = 3.460e-17
Identity = 45/74 (60.81%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 EPGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            EPGEMGDNL  VDLGT RTA  +T G    C +LDN+ VKC+G +TS     GQLGL D  NRGD AG MGD L
Sbjct:  332 EPGEMGDNLPAVDLGTGRTAKQLTAGGGFNCTLLDNDTVKCWGRNTS-----GQLGLGDTTNRGDGAGEMGDNL 400          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A7S4Q2C5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q2C5_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 4.060e-17
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 EPGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDALEY 228
            +PGEMGDNL  VDLGT  T + +  G  H C +LD+  VKC+G  TS     G+LG EDD NRGD  G MGDAL Y
Sbjct:   28 QPGEMGDNLPSVDLGTGCTVLDLGAGEAHNCALLDSNRVKCWGRGTS-----GRLGYEDDRNRGDAPGEMGDALPY 98          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 8.980e-17
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            PGEMGDNL  +DLGT RTAV I  G  HTC +LD+ ++KC+G +TS      QLGL D  NRGD+ G MGD L
Sbjct:  204 PGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLKCWGANTS-----AQLGLGDAQNRGDQPGEMGDNL 271          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 1.260e-16
Identity = 42/73 (57.53%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            PGEMGD L  V+LGT RTA  I+ G WHTC +LDN +VKC+G +      AGQLGL D  NRGD    MGD L
Sbjct: 1851 PGEMGDTLPAVELGTGRTATAISAGGWHTCALLDNGSVKCWGYND-----AGQLGLGDTSNRGDGPSEMGDTL 1918          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A382ZHR9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ZHR9_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 1.660e-16
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   10 EMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDAL 222
            EMGDNL  +DLGT RTA  I  G  HTC +LDN ++KC+G + S     GQLGL D   RGD +G MGD+L
Sbjct:  103 EMGDNLTAIDLGTGRTATAIAAGNHHTCAILDNASIKCWGSNAS-----GQLGLGDTSTRGDGSGEMGDSL 168          
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE)

HSP 1 Score: 80.9 bits (198), Expect = 1.750e-16
Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQLGLEDDGNRGDKAGSMGDALEY 228
            PGEMGDNL  VDLGT RTAV +  G +HTC VLDN   KC+G +      A QLG  D  NRGD  G MGD+L +
Sbjct:   73 PGEMGDNLPFVDLGTGRTAVVLAGGHYHTCAVLDNGRAKCWGWNN-----AAQLGYGDTNNRGDNPGEMGDSLPF 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15738.3327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKP6_ECTSI7.060e-2058.33Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JPT1_9PHAE8.520e-1956.34Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A150FY78_GONPE8.550e-1853.33Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A383F410_9ZZZZ1.040e-1758.90Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI001056704E3.460e-1760.81hypothetical protein n=1 Tax=Legionella yabuuchiae... [more]
A0A7S4Q2C5_9DINO4.060e-1755.26Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7C1YKS1_9ACTN8.980e-1757.53Fibronectin type-III domain-containing protein (Fr... [more]
A0A835T094_9CHLO1.260e-1657.53Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A382ZHR9_9ZZZZ1.660e-1654.93Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A150G0E4_GONPE1.750e-1656.00Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15738contigH-paniculata_contig15738:1459..2147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue5.9e-16
Seed eggNOG ortholog2880.D7FKP6
Preferred nameRCCD1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15738.3327.1prot_H-paniculata_contig15738.3327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15738 1471..2147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.3538046-UTR-H-paniculata_contig15738:1458..14701622929255.3538046-UTR-H-paniculata_contig15738:1458..1470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15738 1459..1470 +
1691480789.5187418-UTR-H-paniculata_contig15738:1458..14701691480789.5187418-UTR-H-paniculata_contig15738:1458..1470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15738 1459..1470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.3658543-CDS-H-paniculata_contig15738:1470..15781622929255.3658543-CDS-H-paniculata_contig15738:1470..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15738 1471..1578 +
1691480789.5332057-CDS-H-paniculata_contig15738:1470..15781691480789.5332057-CDS-H-paniculata_contig15738:1470..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15738 1471..1578 +
1622929255.377166-CDS-H-paniculata_contig15738:2039..21471622929255.377166-CDS-H-paniculata_contig15738:2039..2147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15738 2040..2147 +
1691480789.5423331-CDS-H-paniculata_contig15738:2039..21471691480789.5423331-CDS-H-paniculata_contig15738:2039..2147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15738 2040..2147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15738.3327.1

>prot_H-paniculata_contig15738.3327.1 ID=prot_H-paniculata_contig15738.3327.1|Name=mRNA_H-paniculata_contig15738.3327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKCFGVSTSDDLGAGQ
LGLEDDGNRGDKAGSMGDALEY
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mRNA from alignment at H-paniculata_contig15738:1459..2147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15738.3327.1 ID=mRNA_H-paniculata_contig15738.3327.1|Name=mRNA_H-paniculata_contig15738.3327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=689bp|location=Sequence derived from alignment at H-paniculata_contig15738:1459..2147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGGGGGAGATGGGAGATAACCTAGCCGACGTTGATCTAGGTACCGA CAGAACGGCGGTCCATATCACATGTGGCAGGTGGCATACTTGCGTGGTTC TGGACAACGAAGCCGTGAAGGTGTGCTTTTGGGTTTTTCTCTGGACCAAA ATTCACAAACCGTGCGCTGAAGTAGGGCCGGGTGTTTGCGTCTGGGTCTG GGTTTGTGTCGCCACATAGTTGTAGGTGTATCTTCGTGTTCTCTTTCTGC ATCTCAAACCTCATCACTCCGTATTTCTATCTCACTCCGTCTGTAGCTCT GTCGCTCTGTCGTATCTCTCTGTCTCGCCGTATTTTCCTCGCTGCCTCGC TGTCTTCTTCTCTATCTCGCTATCTCTATCTGTCTCGTTTCCCCCTCTTT CTTTATCTCTCTCGGGGTCATGATGAATATAATGCTGCTGTTTGACCTCG CGTGGATCCTCTGGGCATCTATCGCACCTACTGTCCGTGTGTGATATCCA TGCTTCTCAACGCCCTTCTGTTTTTGATGCATACTCACATGGATTTGAGA GTTCTCTGCCCACCACTCATGAACTTGATAGTGTTTCGGCGTAAGTACCT CGGATGACCTCGGGGCGGGGCAACTAGGCCTGGAAGATGACGGGAACCGA GGCGACAAGGCTGGCTCGATGGGCGATGCCCTGGAGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15738:1459..2147+

>mRNA_H-paniculata_contig15738.3327.1 ID=mRNA_H-paniculata_contig15738.3327.1|Name=mRNA_H-paniculata_contig15738.3327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig15738:1459..2147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGATAACCTAGCCGACGTTGATCTAGGTACCGACAGAACGGCGGT
CCATATCACATGTGGCAGGTGGCATACTTGCGTGGTTCTGGACAACGAAG
CCGTGAAGATGGGAGATAACCTAGCCGACGTTGATCTAGGTACCGACAGA
ACGGCGGTCCATATCACATGTGGCAGGTGGCATACTTGCGTGGTTCTGGA
CAACGAAGCCGTGAAGTGTTTCGGCGTAAGTACCTCGGATGACCTCGGGG
CGGGGCAACTAGGCCTGGAAGATGACGGGAACCGAGGCGACAAGGCTGGC
TCGATGGGCGATGCCCTGGAGTACTGTTTCGGCGTAAGTACCTCGGATGA
CCTCGGGGCGGGGCAACTAGGCCTGGAAGATGACGGGAACCGAGGCGACA
AGGCTGGCTCGATGGGCGATGCCCTGGAGTAC
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