mRNA_H-paniculata_contig15574.3250.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15574.3250.1
Unique NamemRNA_H-paniculata_contig15574.3250.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15574.3250.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.750e-5
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:    6 GCSTQPSYGSAGTRKAEFCAQHAKVGMVDVRKKACSH 116
            GC+  PSYG AG++K EFCAQHAK GMV++R + C H
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRCDH 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15574.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE1_ECTSI4.750e-562.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15574contigH-paniculata_contig15574:2860..4591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1716
Cds size1161
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15574.3250.1prot_H-paniculata_contig15574.3250.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15574 2943..4103 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.8603559-UTR-H-paniculata_contig15574:2859..29421622929245.8603559-UTR-H-paniculata_contig15574:2859..2942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15574 2860..2942 +
1691480785.4678953-UTR-H-paniculata_contig15574:2859..29421691480785.4678953-UTR-H-paniculata_contig15574:2859..2942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15574 2860..2942 +
1622929245.8893619-UTR-H-paniculata_contig15574:4119..45911622929245.8893619-UTR-H-paniculata_contig15574:4119..4591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15574 4120..4591 +
1691480785.4902039-UTR-H-paniculata_contig15574:4119..45911691480785.4902039-UTR-H-paniculata_contig15574:4119..4591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15574 4120..4591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.8774524-CDS-H-paniculata_contig15574:2942..41031622929245.8774524-CDS-H-paniculata_contig15574:2942..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15574 2943..4103 +
1691480785.4796822-CDS-H-paniculata_contig15574:2942..41031691480785.4796822-CDS-H-paniculata_contig15574:2942..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15574 2943..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15574.3250.1

>prot_H-paniculata_contig15574.3250.1 ID=prot_H-paniculata_contig15574.3250.1|Name=mRNA_H-paniculata_contig15574.3250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=387bp
MVDVRKKACSHEGCSRQPSYGSAGTRKTEFCARHAKAGMVDVRNKTCSRE
GCSTYSSYGSAGTRKAEFCARHAKAGMVDVRKKTCSHEGCSISSSYGSAG
TRKAEFCAEHAKAGMVDVRKKTCSHEDCSTSSSYGSAGTRKAEFCARHAK
AGMVNVRSKTCSHEGCSTQPSYGSAGTRKADFCVQHAKAGMVNVQSKACS
HEGCSTQRSYGSAGSRKAEFCARHAKVGMVNVQSKACSHEGCSTQPSYGS
AGTRKAEFCAQHAQDEMIVDRTPTSINRGHLSQEWSSFLQIKEEVPSGEA
DNHEGYPGTSENAGKRNRRTERLHSDSSVVRENCIVKRARSGAGLTISEQ
PALTMPAASMLSLDDVTNVKTEVTVSRCSSSDQASQ*
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mRNA from alignment at H-paniculata_contig15574:2860..4591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15574.3250.1 ID=mRNA_H-paniculata_contig15574.3250.1|Name=mRNA_H-paniculata_contig15574.3250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1732bp|location=Sequence derived from alignment at H-paniculata_contig15574:2860..4591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGGGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAG
GCAGAGTTCTGTGCGCAGCATGCCAAAGTCGGTATGGTAGACGTGCGGAA
AAAGGCGTGTTCTCACGAGGGCTGCTCTAGACAGCCGTCGTACGGGTCGG
CGGGCACGAGAAAGACAGAGTTCTGTGCGCGGCATGCCAAAGCCGGGATG
GTGGACGTGCGGAACAAGACGTGCTCCCGCGAGGGCTGCTCGACATATTC
GTCGTACGGGTCGGCGGGCACGAGAAAGGCAGAATTCTGTGCGCGGCATG
CCAAAGCCGGGATGGTAGACGTGCGGAAGAAGACGTGTTCTCACGAGGGC
TGCTCGATATCTTCGTCGTACGGGTCGGCGGGCACGAGAAAGGCAGAGTT
CTGTGCGGAGCATGCCAAAGCCGGTATGGTAGACGTGCGGAAAAAGACGT
GCTCCCACGAGGACTGTTCGACATCTTCGTCGTACGGGTCGGCGGGCACG
AGAAAGGCCGAGTTCTGTGCGCGGCATGCCAAAGCCGGCATGGTAAACGT
GCGGAGTAAAACGTGTTCTCACGAGGGCTGCTCTACACAGCCGTCGTACG
GGTCGGCGGGCACGAGAAAGGCAGATTTCTGTGTCCAGCATGCCAAAGCC
GGCATGGTAAACGTGCAGAGTAAGGCGTGTTCTCACGAGGGCTGCTCTAC
ACAGCGGTCGTACGGGTCGGCGGGCTCGAGAAAGGCAGAGTTCTGTGCGC
GGCATGCCAAAGTCGGCATGGTAAACGTGCAGAGTAAGGCGTGTTCTCAC
GAGGGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAGGC
AGAATTCTGTGCACAGCATGCCCAAGACGAGATGATCGTCGACAGAACCC
CGACGAGCATTAACCGCGGCCATCTTTCGCAGGAATGGTCAAGTTTTTTA
CAGATAAAAGAAGAAGTGCCTTCGGGTGAGGCGGACAATCATGAAGGGTA
TCCGGGAACTTCCGAGAACGCCGGAAAGCGAAACCGACGTACTGAGCGTT
TACACAGCGATAGTTCTGTGGTGCGCGAGAATTGCATAGTGAAAAGGGCT
CGCAGTGGCGCGGGATTGACAATCTCGGAGCAGCCTGCTCTTACGATGCC
CGCTGCTAGCATGTTGTCTCTCGACGACGTCACCAACGTCAAGACGGAGG
TGACTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCAGTGAGTGGCG
GAGGATCCAGATCATGGAGAAGGCGATTATGGAGGATCCAGATCATGGAG
AAGGCGATTATGGGTGGCTTTCTATGCGCGAGTAACAGCCGCTCGTGAAT
AATGGGAACCAAGCTTTTCGATGGAAACAGAGTGCCGTTGATTTTTCGTG
CTGGTCATTTTGAATGAAGGTTTCTGGTGGAGGTCAAAGGCAGGTCCCTC
TCGTACAAGAGGTCCTGTCGATGCCAATGCTCATTTTGACCGTTCAAAAA
GAAGAAAAATGAAATCCTCGTCGTTGGGCCGAAAGTAGCGGCCGAGTGGC
CGCGAAGCAAAACACAAGGCGCGACTTGCCTGACCTGCCCCCGGCGTTTA
CCACCAAAGTTCATTCACAGTGATCAGCCCTGAGTGTTGTATCATCATGT
TGCGCCATATTCTAAGTTTTCAATGTAAAATCAATATCACTTCGCTCGCA
TCGAATGACTTGGTGCTCAGTTTTCACGAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig15574:2860..4591+

>mRNA_H-paniculata_contig15574.3250.1 ID=mRNA_H-paniculata_contig15574.3250.1|Name=mRNA_H-paniculata_contig15574.3250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2322bp|location=Sequence derived from alignment at H-paniculata_contig15574:2860..4591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGACGTGCGGAAAAAGGCGTGTTCTCACGAGGGCTGCTCTAGACA
GCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTGCGCGGC
ATGCCAAAGCCGGGATGGTGGACGTGCGGAACAAGACGTGCTCCCGCGAG
GGCTGCTCGACATATTCGTCGTACGGGTCGGCGGGCACGAGAAAGGCAGA
ATTCTGTGCGCGGCATGCCAAAGCCGGGATGGTAGACGTGCGGAAGAAGA
CGTGTTCTCACGAGGGCTGCTCGATATCTTCGTCGTACGGGTCGGCGGGC
ACGAGAAAGGCAGAGTTCTGTGCGGAGCATGCCAAAGCCGGTATGGTAGA
CGTGCGGAAAAAGACGTGCTCCCACGAGGACTGTTCGACATCTTCGTCGT
ACGGGTCGGCGGGCACGAGAAAGGCCGAGTTCTGTGCGCGGCATGCCAAA
GCCGGCATGGTAAACGTGCGGAGTAAAACGTGTTCTCACGAGGGCTGCTC
TACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAGGCAGATTTCTGTG
TCCAGCATGCCAAAGCCGGCATGGTAAACGTGCAGAGTAAGGCGTGTTCT
CACGAGGGCTGCTCTACACAGCGGTCGTACGGGTCGGCGGGCTCGAGAAA
GGCAGAGTTCTGTGCGCGGCATGCCAAAGTCGGCATGGTAAACGTGCAGA
GTAAGGCGTGTTCTCACGAGGGCTGCTCTACACAGCCGTCGTACGGGTCG
GCGGGCACGAGAAAGGCAGAATTCTGTGCACAGCATGCCCAAGACGAGAT
GATCGTCGACAGAACCCCGACGAGCATTAACCGCGGCCATCTTTCGCAGG
AATGGTCAAGTTTTTTACAGATAAAAGAAGAAGTGCCTTCGGGTGAGGCG
GACAATCATGAAGGGTATCCGGGAACTTCCGAGAACGCCGGAAAGCGAAA
CCGACGTACTGAGCGTTTACACAGCGATAGTTCTGTGGTGCGCGAGAATT
GCATAGTGAAAAGGGCTCGCAGTGGCGCGGGATTGACAATCTCGGAGCAG
CCTGCTCTTACGATGCCCGCTGCTAGCATGTTGTCTCTCGACGACGTCAC
CAACGTCAAGACGGAGGTGACTGTGTCGCGATGTTCGTCGTCTGACCAGG
CCTCGCAGTGAATGGTAGACGTGCGGAAAAAGGCGTGTTCTCACGAGGGC
TGCTCTAGACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTT
CTGTGCGCGGCATGCCAAAGCCGGGATGGTGGACGTGCGGAACAAGACGT
GCTCCCGCGAGGGCTGCTCGACATATTCGTCGTACGGGTCGGCGGGCACG
AGAAAGGCAGAATTCTGTGCGCGGCATGCCAAAGCCGGGATGGTAGACGT
GCGGAAGAAGACGTGTTCTCACGAGGGCTGCTCGATATCTTCGTCGTACG
GGTCGGCGGGCACGAGAAAGGCAGAGTTCTGTGCGGAGCATGCCAAAGCC
GGTATGGTAGACGTGCGGAAAAAGACGTGCTCCCACGAGGACTGTTCGAC
ATCTTCGTCGTACGGGTCGGCGGGCACGAGAAAGGCCGAGTTCTGTGCGC
GGCATGCCAAAGCCGGCATGGTAAACGTGCGGAGTAAAACGTGTTCTCAC
GAGGGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAGGC
AGATTTCTGTGTCCAGCATGCCAAAGCCGGCATGGTAAACGTGCAGAGTA
AGGCGTGTTCTCACGAGGGCTGCTCTACACAGCGGTCGTACGGGTCGGCG
GGCTCGAGAAAGGCAGAGTTCTGTGCGCGGCATGCCAAAGTCGGCATGGT
AAACGTGCAGAGTAAGGCGTGTTCTCACGAGGGCTGCTCTACACAGCCGT
CGTACGGGTCGGCGGGCACGAGAAAGGCAGAATTCTGTGCACAGCATGCC
CAAGACGAGATGATCGTCGACAGAACCCCGACGAGCATTAACCGCGGCCA
TCTTTCGCAGGAATGGTCAAGTTTTTTACAGATAAAAGAAGAAGTGCCTT
CGGGTGAGGCGGACAATCATGAAGGGTATCCGGGAACTTCCGAGAACGCC
GGAAAGCGAAACCGACGTACTGAGCGTTTACACAGCGATAGTTCTGTGGT
GCGCGAGAATTGCATAGTGAAAAGGGCTCGCAGTGGCGCGGGATTGACAA
TCTCGGAGCAGCCTGCTCTTACGATGCCCGCTGCTAGCATGTTGTCTCTC
GACGACGTCACCAACGTCAAGACGGAGGTGACTGTGTCGCGATGTTCGTC
GTCTGACCAGGCCTCGCAGTGA
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