mRNA_H-paniculata_contig15425.3181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15425.3181.1
Unique NamemRNA_H-paniculata_contig15425.3181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15425.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15425contigH-paniculata_contig15425:4369..5696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size487
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.9275324-CDS-H-paniculata_contig15425:4370..47211622929234.9275324-CDS-H-paniculata_contig15425:4370..4721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 4371..4721 -
1691480781.573243-CDS-H-paniculata_contig15425:4370..47211691480781.573243-CDS-H-paniculata_contig15425:4370..4721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 4371..4721 -
1622929234.9404478-CDS-H-paniculata_contig15425:5564..56961622929234.9404478-CDS-H-paniculata_contig15425:5564..5696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 5565..5696 -
1691480781.5844555-CDS-H-paniculata_contig15425:5564..56961691480781.5844555-CDS-H-paniculata_contig15425:5564..5696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 5565..5696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15425.3181.1prot_H-paniculata_contig15425.3181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15425 4371..5696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15425.3181.1

>prot_H-paniculata_contig15425.3181.1 ID=prot_H-paniculata_contig15425.3181.1|Name=mRNA_H-paniculata_contig15425.3181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
QGGVGGTGGRESDGGLRPLAEFVEGREAVSQDGVIEDLKSPQKEGEPSQG
GTGDAQYQNAAAQSNPATAAGATAAGGGEGDSIATPGDGIPQTAGWGDNA
ASGQEEEALAHFPDNNNDGGGGGGRPIKSPSSLGGPIAKSGGETGLQAFE
SGQQGDIKSER
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mRNA from alignment at H-paniculata_contig15425:4369..5696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15425.3181.1 ID=mRNA_H-paniculata_contig15425.3181.1|Name=mRNA_H-paniculata_contig15425.3181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-paniculata_contig15425:4369..5696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTGGCGTCGGCGGGACGGGGGGGCGGGAATCTGACGGCGGCTTGCG
ACCTCTGGCGGAGTTTGTGGAGGGACGGGAGGCGGTTAGCCAGGACGGGG
TGATCGAAGACTTGAAATCTCCGCAGAAGGAGGTGCGATGTACATGATGT
ATGAGAGGGTGCGGGAGAGAGGATTGGCGGGAGAGAGGATTGGCGGGACA
GGCGAGGGTAGGGGGTGTAACGTTGGGATGAAGCGAGTGGGGTTGCGTAG
TTGGGAGATCGCTCTACACTAAGGAGTCAACTTGATCAAGGCCTCCGTTC
CTTCTTGGTTATCTAGATGTTCGCATGCTTGTCCTAAAGTCTGAATACAA
GGACAGAGAGCCCCAACCAAGTATACGTGCGTGGGCTCAGACCCTACAGC
CCTTTCCCAGGTACACACTTTGCGGGCTTTGTCCTGACGAAAATGGGTGC
AGTTTTGAAGGAGCTGCAGCAATCCGCGTCAAGTTTTGGAAACAAAATCA
CGCGGTGTTTTGACCGTTTTTCTGTATTGGGATCCTTGTGGGTGAGGCGG
CAGTGAAAATCGGTTCTCCCCCAGTTATCAGCGAATTCAACGCAAACCGC
AAACTCATACACGACACTCAGTACGAAAAGGCCTACGGCTCAAGCCTAGA
TATAGGTTCATCTCCTCTCCTTCTGTTTTCCAGTTTCGACGATCCCCTGT
AGTGGCGACTTCTCGTAGATTTTTGCCTACGTAGATAACGACCAATCTAC
GAAATCCACGCCCCAAGTGAACAAAACACCCATGTCATGATCTTGTCTGC
ACCCCTTGCCGTTAGTTAGTGACTCTCACCGCCAGACGACGCGAGAGAGA
TATTTGATACATCTCCTGGACATTGTAGGTAGCACTAAATACTTGATACT
TACACCAGGCCAGTACCACCATTACCACGACTACCACTATGACCACCCCC
ATATCTCGATCGCTGAAAACGAAAGGGAGAACCGTCACAAGGAGGAACGG
GCGACGCGCAATATCAAAACGCAGCCGCGCAATCGAACCCGGCAACCGCG
GCGGGCGCTACCGCTGCTGGGGGTGGAGAAGGGGACAGTATCGCTACCCC
CGGCGACGGCATCCCTCAAACAGCCGGCTGGGGGGACAATGCTGCCTCGG
GACAAGAAGAAGAAGCACTCGCGCATTTCCCCGACAATAACAACGATGGC
GGCGGCGGGGGAGGTAGGCCAATCAAGAGCCCAAGCAGCCTTGGCGGGCC
AATTGCAAAAAGCGGCGGCGAGACAGGCCTGCAGGCGTTCGAAAGCGGGC
AGCAGGGCGACATCAAGAGCGAGAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15425:4369..5696-

>mRNA_H-paniculata_contig15425.3181.1 ID=mRNA_H-paniculata_contig15425.3181.1|Name=mRNA_H-paniculata_contig15425.3181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig15425:4369..5696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTGGCGTCGGCGGGACGGGGGGGCGGGAATCTGACGGCGGCTTGCG
ACCTCTGGCGGAGTTTGTGGAGGGACGGGAGGCGGTTAGCCAGGACGGGG
TGATCGAAGACTTGAAATCTCCGCAGAAGGAGCAGGGTGGCGTCGGCGGG
ACGGGGGGGCGGGAATCTGACGGCGGCTTGCGACCTCTGGCGGAGTTTGT
GGAGGGACGGGAGGCGGTTAGCCAGGACGGGGTGATCGAAGACTTGAAAT
CTCCGCAGAAGGAGGGAGAACCGTCACAAGGAGGAACGGGCGACGCGCAA
TATCAAAACGCAGCCGCGCAATCGAACCCGGCAACCGCGGCGGGCGCTAC
CGCTGCTGGGGGTGGAGAAGGGGACAGTATCGCTACCCCCGGCGACGGCA
TCCCTCAAACAGCCGGCTGGGGGGACAATGCTGCCTCGGGACAAGAAGAA
GAAGCACTCGCGCATTTCCCCGACAATAACAACGATGGCGGCGGCGGGGG
AGGTAGGCCAATCAAGAGCCCAAGCAGCCTTGGCGGGCCAATTGCAAAAA
GCGGCGGCGAGACAGGCCTGCAGGCGTTCGAAAGCGGGCAGCAGGGCGAC
ATCAAGAGCGAGAGGGGAGAACCGTCACAAGGAGGAACGGGCGACGCGCA
ATATCAAAACGCAGCCGCGCAATCGAACCCGGCAACCGCGGCGGGCGCTA
CCGCTGCTGGGGGTGGAGAAGGGGACAGTATCGCTACCCCCGGCGACGGC
ATCCCTCAAACAGCCGGCTGGGGGGACAATGCTGCCTCGGGACAAGAAGA
AGAAGCACTCGCGCATTTCCCCGACAATAACAACGATGGCGGCGGCGGGG
GAGGTAGGCCAATCAAGAGCCCAAGCAGCCTTGGCGGGCCAATTGCAAAA
AGCGGCGGCGAGACAGGCCTGCAGGCGTTCGAAAGCGGGCAGCAGGGCGA
CATCAAGAGCGAGAGG
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