mRNA_H-paniculata_contig15425.3180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15425.3180.1
Unique NamemRNA_H-paniculata_contig15425.3180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.130e-45
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGNRVGFFAYLQVGARE 255
            EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQS AG RVGFFAY Q+ A E
Sbjct:  346 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSQAGERVGFFAYYQMEAVE 430          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: F0YC72_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC72_AURAN)

HSP 1 Score: 92.0 bits (227), Expect = 7.510e-20
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   16 ESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGNR 216
            E  VSPY+  GP+AKYVTFEPD  GWNN+RMAFETV VFA+ TGRTLVMPP  QRL+ L     GNR
Sbjct:  392 EPRVSPYADYGPSAKYVTFEPDNGGWNNIRMAFETVAVFAHATGRTLVMPPA-QRLYLLKVQHEGNR 457          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: D7FR32_ECTSI (GDP-fucose protein O-fucosyltransferase, family GT65 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR32_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.940e-19
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  106 MAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGNRVGFFAYLQVGARE 255
            MAFETVVVFAYVTGRTLVMPPVKQRLHGLPQS AG RVGFFAY Q+ A E
Sbjct:    1 MAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSQAGERVGFFAYYQMEAVE 50          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A8J2SM68_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM68_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.890e-17
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   16 ESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGN 213
            E+  SPY+  GP  KY+TFEPD  GWNN+RMAFET+ V A+ TGR LVMPP  QRL+ L  + AGN
Sbjct:  154 ETHASPYAGYGPKRKYLTFEPDAGGWNNIRMAFETLAVLAHATGRVLVMPP-PQRLYLLKVTHAGN 218          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: W7U3X1_9STRA (Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.240e-16
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    7 PGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 168
            P  E  V+P+++LGP  KYVTFEPD  GWNN+RMA E V+VFAY TGRTLVMPP
Sbjct:  164 PDLEKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPP 217          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A7S3H5B6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.320e-16
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   28 SPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 168
            SPY   GPA KYVTFEPD  GWNN+RM  E V+VFAY TGRTLV+PP
Sbjct:    1 SPYLHHGPAVKYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPP 47          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A482S0N0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0N0_9ARCH)

HSP 1 Score: 76.3 bits (186), Expect = 2.510e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGNR-----VGFFAYLQVGAR 252
            PY   GP  KYVTFEPD  GWNN+RM  E V+VFAY TGRTLV+PP  Q ++ L Q+G G++       FF + ++  R
Sbjct:   91 PYIDYGPRVKYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPP-DQPMY-LLQAGKGHQKAHSFADFFPFEKIQER 167          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A7S2KT07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KT07_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.180e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   13 DESWVSPYSSLGPA-AKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSGAGNRV-GFFAYLQV 243
            D ++VSP++S   +  +Y+TFEPD  GWNN+RMA ETV+VFA  TGRTLV+PP         QSG G +  GF  +L +
Sbjct:   55 DVNFVSPFASADTSETRYITFEPDRGGWNNIRMALETVLVFAAATGRTLVLPPNTPFYRLTDQSGKGAKHHGFADFLDL 133          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A7S2L6Y3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L6Y3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.270e-13
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQ 177
            ++P D  ++SP+   G   KY+TFEPD  GWNN+RMA ETV+V A+  GRTLV+PP K+
Sbjct:  137 DIPSDSKYISPFFEAG-NEKYMTFEPDGGGWNNIRMAMETVIVMAHAMGRTLVLPPEKR 194          
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Match: A0A6S7ZGN1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZGN1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.280e-13
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    4 VPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQS 201
            +P D+ W SPY +LGP  KY+ FEPD  GWNN+R+ FE  +  A+ TGRT V+PP + R++ L +S
Sbjct:  159 LPKDKVWESPYKNLGPKNKYLLFEPDEGGWNNLRLGFEANLALAFATGRTFVLPP-RDRVYLLKKS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15425.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L164_9PHAE1.130e-4592.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YC72_AURAN7.510e-2068.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FR32_ECTSI3.940e-1988.00GDP-fucose protein O-fucosyltransferase, family GT... [more]
A0A8J2SM68_9STRA6.890e-1760.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7U3X1_9STRA3.240e-1668.52Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S3H5B6_9STRA3.320e-1672.34Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A482S0N0_9ARCH2.510e-1450.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2KT07_9STRA1.180e-1349.37Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2L6Y3_9STRA2.270e-1354.24Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6S7ZGN1_9STRA2.280e-1350.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15425contigH-paniculata_contig15425:391..645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.8e-17
Seed eggNOG ortholog44056.XP_009038051.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GDP-fucose protein O-fucosyltransferase
EggNOG OGs2B2NM@1,2S0D4@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.9749517-CDS-H-paniculata_contig15425:390..6451622929234.9749517-CDS-H-paniculata_contig15425:390..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 391..645 -
1691480781.5962427-CDS-H-paniculata_contig15425:390..6451691480781.5962427-CDS-H-paniculata_contig15425:390..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15425 391..645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15425.3180.1prot_H-paniculata_contig15425.3180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15425 391..645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15425.3180.1

>prot_H-paniculata_contig15425.3180.1 ID=prot_H-paniculata_contig15425.3180.1|Name=mRNA_H-paniculata_contig15425.3180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGR
TLVMPPVKQRLHGLPQSGAGNRVGFFAYLQVGARE
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mRNA from alignment at H-paniculata_contig15425:391..645-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15425.3180.1 ID=mRNA_H-paniculata_contig15425.3180.1|Name=mRNA_H-paniculata_contig15425.3180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig15425:391..645- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGCCTGGAGATGAAAGTTGGGTGAGCCCCTACTCTTCGCTAGGACC GGCAGCGAAATACGTGACGTTTGAGCCGGATTGTGCCGGTTGGAACAACG TTCGGATGGCGTTTGAAACCGTAGTTGTGTTCGCCTACGTTACGGGGAGA ACGTTAGTCATGCCCCCAGTCAAACAACGCCTCCATGGGTTGCCACAGTC AGGGGCCGGAAATCGTGTGGGATTCTTCGCGTATCTTCAGGTGGGGGCAA GGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15425:391..645-

>mRNA_H-paniculata_contig15425.3180.1 ID=mRNA_H-paniculata_contig15425.3180.1|Name=mRNA_H-paniculata_contig15425.3180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig15425:391..645- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGCCTGGAGATGAAAGTTGGGTGAGCCCCTACTCTTCGCTAGGACC
GGCAGCGAAATACGTGACGTTTGAGCCGGATTGTGCCGGTTGGAACAACG
TTCGGATGGCGTTTGAAACCGTAGTTGTGTTCGCCTACGTTACGGGGAGA
ACGTTAGTCATGCCCCCAGTCAAACAACGCCTCCATGGGTTGCCACAGTC
AGGGGCCGGAAATCGTGTGGGATTCTTCGCGTATCTTCAGGTGGGGGCAA
GGGAAGAGGTGCCTGGAGATGAAAGTTGGGTGAGCCCCTACTCTTCGCTA
GGACCGGCAGCGAAATACGTGACGTTTGAGCCGGATTGTGCCGGTTGGAA
CAACGTTCGGATGGCGTTTGAAACCGTAGTTGTGTTCGCCTACGTTACGG
GGAGAACGTTAGTCATGCCCCCAGTCAAACAACGCCTCCATGGGTTGCCA
CAGTCAGGGGCCGGAAATCGTGTGGGATTCTTCGCGTATCTTCAGGTGGG
GGCAAGGGAA
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