mRNA_H-paniculata_contig1542.3178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1542.3178.1
Unique NamemRNA_H-paniculata_contig1542.3178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: D7G5S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S6_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 2.060e-133
Identity = 184/215 (85.58%), Postives = 195/215 (90.70%), Query Frame = 1 
Query:   28 MVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHLSLPQS 672
            MVDGGSYI+IGD YKGNKIILPDRWKGKGLSVPQ+PKNAENG+FSRLEY+SEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIME+HRD  K+    ++ EK   E R FP GL EIEHLYD+GR+Q+TEFDPKNSRDRFY LSIG EKRRGPYRTMAQDIGS AWGH YQSPE GPIHHVKFFYDKSHLSLPQS
Sbjct:    1 MVDGGSYISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEYRSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSIGQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHLSLPQS 215
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A836CAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI9_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.670e-87
Identity = 132/221 (59.73%), Postives = 164/221 (74.21%), Query Frame = 1 
Query:    1 YIVYRLNKNMVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHLSL 663
            Y   R+N  + +G  YI++GD Y+G K  LP RWKGKG  V Q+P NAENG+FS+LEYKS  + +ME++SKTQP   RK GFGTKDAFR GEFTATIRTEQYRD LR E+ IM +  D  ++  +I RAE++    RTF  GL E +HLYD+GR Q+T+FDPK+SRDRFY   I  E+R G +RTMAQDIG  AW HKY+SPEFGPIHH K F+D+SHL++
Sbjct:    2 YSTKRVNDKIAEG--YISVGDPYRGTKDTLPGRWKGKGFKVLQVPVNAENGNFSKLEYKSCAFQEMERYSKTQP--DRKKGFGTKDAFRRGEFTATIRTEQYRDQLRKEQTIMAKFCDPVRDSEIIRRAEEKQRSTRTFCEGLPETDHLYDVGRTQVTKFDPKHSRDRFYTPDINRERRMGGFRTMAQDIGDGAWSHKYKSPEFGPIHHTKLFWDRSHLTV 218
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: D7FNL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL0_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 7.740e-75
Identity = 114/221 (51.58%), Postives = 152/221 (68.78%), Query Frame = 1 
Query:    1 YIVYRLNKNMVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHLSL 663
            Y   R+NKN+V+G  +I++GD YK  +  LP RWKGK       P NA+NG+F++L+Y SEP+ + E+F+KTQPL KR LGFGTKDAF+ GEFTATIRT+QYR++LR E+ +M   R+ + E   + +A+ +    R F  G  EI+HLYD+GR+   EF+P    D FY       KR GPYRTMAQDIG+ AW H+  +PEFGPI H+K FYD+SHL +
Sbjct:    2 YSTKRVNKNIVEGNRFISVGDPYKELRR-LPGRWKGKQFQTEGCPANADNGNFAKLKYSSEPFQETERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEV 221
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A6V1R9I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9I1_HETAK)

HSP 1 Score: 214 bits (545), Expect = 7.560e-67
Identity = 112/219 (51.14%), Postives = 142/219 (64.84%), Query Frame = 1 
Query:    1 YIVYRLNKNMVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHL 657
            Y   R+NKN +D  SYI+I D Y  N+  LP RWK K  +V  +P     G+F++  Y  +PY +   F K QP D RKLGFGTKDA + GEFTATIRTEQYR+ L+ E+ I++  RD   E   +ERA K+  E+R+FP GL+E   LYDIGR  +T+FDP+ SRD FY L     KR G ++T A  +GS AW H+Y  PEFGPI +VK FYDK HL
Sbjct:    2 YATKRINKNKIDV-SYISIQDPYVENRK-LPPRWKEKQFAVAHLPNPENGGYFAKKTYAPDPYKEAVHFIKEQPADSRKLGFGTKDASKRGEFTATIRTEQYRETLKKEQRILDHQRDPAAETMTLERARKR-EEERSFPEGLSETRRLYDIGRQNVTDFDPRQSRDTFYTLRKDRPKRLGHHQTAAAAVGSGAWDHEYSKPEFGPIPYVKNFYDKGHL 217
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A7S2XZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN8_9STRA)

HSP 1 Score: 209 bits (532), Expect = 7.510e-65
Identity = 109/223 (48.88%), Postives = 143/223 (64.13%), Query Frame = 1 
Query:    1 YIVYRLNKNMVD-GGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEI-TMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHLSL 663
            Y  +R +KN++D   SY+TIGD Y      +P RWK K   V   P   ++G+F   +Y+ E Y +ME + K+QP D+RK GFG+ DA R GEFT+TIRTEQYR+ L+ E  + E+ RD E E   M   AE++M   RTF  GL E  HLYDIG+ Q+TEFDP++SRD FY +     KR G + T +Q +G  AW HKY  PEFGPI +VK FYD+SHL +
Sbjct:    2 YRTHRTHKNLLDKDASYVTIGDPYIDPNRTIPPRWKEKQFVVQHKPALKQSGYFEEFKYQPEEYKEMESYLKSQPQDRRKNGFGSHDATRRGEFTSTIRTEQYRETLKQELRVHEKQRDPESERKVMAIAAEREMG--RTFTEGLTETRHLYDIGKKQVTEFDPRSSRDTFYVMRKDRPKRLGAHTTSSQAVGDGAWDHKYTKPEFGPIPYVKNFYDRSHLQI 222
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: F0YHZ6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHZ6_AURAN)

HSP 1 Score: 188 bits (478), Expect = 1.300e-56
Identity = 109/228 (47.81%), Postives = 135/228 (59.21%), Query Frame = 1 
Query:    1 YIVYRLNKNM-VDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFS----RLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGA--EKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHLSL 663
            Y    +NKN+ VD G YIT+GD Y G K  LP RWK K   VPQ+P NA  G+F        Y+SE Y +   + KTQP DKRKLGFGT DA R  EF+ TIRTEQYR+ L+ E        D   E  + E  +K+  + + F     EI +LYD+GR+  TEFDPKN RD+FY++  G   EKR G  RT +QDIG  AW  KY  PEF     VK F+D+SHL +
Sbjct:    2 YTTKFMNKNVTVDNGRYITVGDPYIGTKDKLPLRWKEKQFHVPQVPSNAGEGYFGFSGKAFSYQSELYTEQRPYMKTQPPDKRKLGFGTHDASRRDEFSQTIRTEQYRETLKKEGRANNNGYD---EDAIEELMKKENAKVKKFVETKKEIGNLYDVGRSIHTEFDPKNGRDQFYSMKHGYTYEKRMGNNRTASQDIGDGAWNFKYSKPEFSAPSQVKNFFDQSHLDI 226
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A7S2EF12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EF12_TRICV)

HSP 1 Score: 172 bits (435), Expect = 5.690e-50
Identity = 89/219 (40.64%), Postives = 135/219 (61.64%), Query Frame = 1 
Query:   43 SYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYKSEPYADM-EKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIE--RAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAE-----------KRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHL 657
            +Y +IGD Y+ +   LP RWK K    P+ PKNA NG F + +Y  +PY +  E++SKTQPL+KR+LGFG+ DAF+PGEFT+   TE+YR+++R E+ +++  RD  +E  +I+  R   + T +      L E + LYD+GR  +T + P+++RD FY L   A            +R G +R M+  IG +AW HKY  PEFG + +++ FYD+ H+
Sbjct:   18 TYTSIGDPYRNSVEELPSRWKKKQFVTPKCPKNAYNGLFVKPQYTPDPYTERAEQYSKTQPLEKRRLGFGSHDAFKPGEFTSDKATERYRNVVRQEQKLLDSVRDEMRERELIQKLRDRPRTTPKDKLGKDLKEPKFLYDVGRTHVTLYSPQSTRDSFYKLPKHAPVDPKLKGLDPIRRLGSHRPMSASIGEQAWRHKYAKPEFGQVKYIEKFYDRGHI 236
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A8J2SVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.220e-44
Identity = 92/221 (41.63%), Postives = 124/221 (56.11%), Query Frame = 1 
Query:   34 DGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLE----YKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEIT-MIERAEKQMTE------QRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYAL--SIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHL 657
            + G YI+IGD Y      LP RWK K +     PKNA NG+F  +     Y  + Y +   ++KTQP D RKLGFGT DA +  EFT  +RTEQYRDLL+ EK I++++      +   I +A K++ E      ++    GL+    LYDIGR++ T+FDPK   D FY    +   E RRG YR+M+QDIG  AW  + +   FG  H    FY KSH+
Sbjct:   43 EAGRYISIGDPYVDEAERLPARWKEKQMGTTMYPKNAGNGYFGNMGKPFMYMPDKYVEQLPYAKTQPYDTRKLGFGTHDASKRDEFTDRVRTEQYRDLLKREKRILQRNEQKRGGLAEQIRKAHKKLAEAAVEEERQREVCGLSAAPFLYDIGRSRETQFDPKTKTDCFYNAYQARKREMRRGGYRSMSQDIGDGAWDLQQKRETFGRSHATAAFYSKSHI 263
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A8K1FR81_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR81_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 2.250e-40
Identity = 95/232 (40.95%), Postives = 132/232 (56.90%), Query Frame = 1 
Query:    1 YIVYRLNKNMVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIP-KNAENG--HFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGA---EKRRGPYRTMAQDIG--SEAWGHKYQSPEFGPIHHVKFFYDKSHLSLPQS 672
            Y    LNKN+   GSY+TIGD Y+   +I     + KG  +  IP KN  NG  +F +  Y S+P  D   + KTQP+DKRK GFG+KDA R  EF + +RTEQYR+ L  E  I+++ + +  E    E  E  + EQRTFP GL E + LYDIGR Q TEF+ K+ RD FY +  G    ++  GP+   ++ IG  ++   +   +P+       K FYD+SHL + QS
Sbjct:    2 YTTKVLNKNIA--GSYLTIGDPYRDPHLIDGKGPRHKGKQMTTIPAKNTCNGIGYFEKKTYSSDPLQDTTMYLKTQPMDKRKSGFGSKDASRREEFMSHVRTEQYRETLTKEMEIVDKQKKALSEEGRFEELEA-LEEQRTFPEGLTETKFLYDIGRTQNTEFNQKSHRDTFYTMRTGNSQYKRNNGPFMLTSESIGIGADDVSNNRPTPKGAS---TKQFYDRSHLHVGQS 227
[Close]
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Match: A0A482RVI8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVI8_9ARCH)

HSP 1 Score: 140 bits (354), Expect = 6.990e-38
Identity = 94/230 (40.87%), Postives = 134/230 (58.26%), Query Frame = 1 
Query:   16 LNKNMVDGGSYITIGDTYKGNKIILPDRW--KGKGLSVPQ---IPKNAENGHFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEQHRDSEKEITMI--ERAEKQMTEQ----RTFPAGLNEIEHLYDIGRNQITEFDPKNSRDRFYALSIGAEKRRGPY-----RTMAQDIGSEAWGHKYQSPEFGPIHHVKFFYDKSHL 657
            ++K+MV   +YIT+GD Y   K   P R   KG+ L+  Q   IP+NAE G+F++  Y  E Y +  K+  TQPLD+RKLGFGTKDA +  EF++  RTEQYR+ LR EK + E     ++++T +  ERA      Q     T   G   I   YDIGR Q+T+F+PK +RD+FY      ++  G Y     + ++ ++G+ AW  +Y+ P FG    VK F+DKSHL
Sbjct:    7 VHKSMVANNAYITVGDPYHDPKA-NPFRQGKKGEKLTPFQSKGIPQNAELGYFTKKSYVPEGYKEGIKYITTQPLDQRKLGFGTKDAHKRDEFSSNNRTEQYRETLRKEKEMAESPEVVKEKLTKLLAERATMDFATQTRYTNTLSGGPKRIRQ-YDIGRTQVTDFNPKATRDKFYRF----DEEHGRYFGDLAQPISCEVGAAAWETQYRPPAFGGKGEVKNFFDKSHL 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1542.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G5S6_ECTSI2.060e-13385.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAI9_9STRA1.670e-8759.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FNL0_ECTSI7.740e-7551.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1R9I1_HETAK7.560e-6751.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZN8_9STRA7.510e-6548.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YHZ6_AURAN1.300e-5647.81Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2EF12_TRICV5.690e-5040.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J2SVQ1_9STRA6.220e-4441.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1FR81_PYTOL2.250e-4040.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482RVI8_9ARCH6.990e-3840.87Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1542contigH-paniculata_contig1542:18976..23931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue7.1e-57
Seed eggNOG ortholog2880.D7FNL0
Hectar predicted targeting categoryother localisation
EggNOG OGs290NK@1,2S4NB@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_008940.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size675
Cds size648
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.7783985-CDS-H-paniculata_contig1542:18975..190861622929234.7783985-CDS-H-paniculata_contig1542:18975..19086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 18976..19086 -
1691480781.4709566-CDS-H-paniculata_contig1542:18975..190861691480781.4709566-CDS-H-paniculata_contig1542:18975..19086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 18976..19086 -
1622929234.789436-CDS-H-paniculata_contig1542:21075..211711622929234.789436-CDS-H-paniculata_contig1542:21075..21171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 21076..21171 -
1691480781.4828565-CDS-H-paniculata_contig1542:21075..211711691480781.4828565-CDS-H-paniculata_contig1542:21075..21171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 21076..21171 -
1622929234.8028622-CDS-H-paniculata_contig1542:21364..214511622929234.8028622-CDS-H-paniculata_contig1542:21364..21451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 21365..21451 -
1691480781.4952478-CDS-H-paniculata_contig1542:21364..214511691480781.4952478-CDS-H-paniculata_contig1542:21364..21451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 21365..21451 -
1622929234.8129416-CDS-H-paniculata_contig1542:22385..225181622929234.8129416-CDS-H-paniculata_contig1542:22385..22518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 22386..22518 -
1691480781.504764-CDS-H-paniculata_contig1542:22385..225181691480781.504764-CDS-H-paniculata_contig1542:22385..22518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 22386..22518 -
1622929234.825046-CDS-H-paniculata_contig1542:23098..232261622929234.825046-CDS-H-paniculata_contig1542:23098..23226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 23099..23226 -
1691480781.5123827-CDS-H-paniculata_contig1542:23098..232261691480781.5123827-CDS-H-paniculata_contig1542:23098..23226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 23099..23226 -
1622929234.836777-CDS-H-paniculata_contig1542:23811..239041622929234.836777-CDS-H-paniculata_contig1542:23811..23904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 23812..23904 -
1691480781.5199904-CDS-H-paniculata_contig1542:23811..239041691480781.5199904-CDS-H-paniculata_contig1542:23811..23904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1542 23812..23904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.8497536-UTR-H-paniculata_contig1542:23904..239311622929234.8497536-UTR-H-paniculata_contig1542:23904..23931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1542 23905..23931 -
1691480781.5286684-UTR-H-paniculata_contig1542:23904..239311691480781.5286684-UTR-H-paniculata_contig1542:23904..23931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1542 23905..23931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1542.3178.1prot_H-paniculata_contig1542.3178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1542 18976..23904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1542.3178.1

>prot_H-paniculata_contig1542.3178.1 ID=prot_H-paniculata_contig1542.3178.1|Name=mRNA_H-paniculata_contig1542.3178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MVDGGSYITIGDTYKGNKIILPDRWKGKGLSVPQIPKNAENGHFSRLEYK
SEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAE
KNIMEQHRDSEKEITMIERAEKQMTEQRTFPAGLNEIEHLYDIGRNQITE
FDPKNSRDRFYALSIGAEKRRGPYRTMAQDIGSEAWGHKYQSPEFGPIHH
VKFFYDKSHLSLPQS*
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mRNA from alignment at H-paniculata_contig1542:18976..23931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1542.3178.1 ID=mRNA_H-paniculata_contig1542.3178.1|Name=mRNA_H-paniculata_contig1542.3178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4956bp|location=Sequence derived from alignment at H-paniculata_contig1542:18976..23931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACATTGTATACAGGCTGAACAAGAACATGGTAGATGGTGGGTCGTACAT
TACTATCGGAGACACCTACAAGGGGAACAAGATAATTCTACCGGATAGAT
GGAAGGGCAAGGGGCTGTCGGTAAGCAAACTCGGCTATTTTAGCCATTCT
CACCGACCGACGAAATGTTTGCAACGACTCGTTACATTCCTCTAAACCAA
GCATCAACACTCCTACGGAAAAAAACATTGAGGGATGACTTGTCACTGGC
GGTGGAAACGACTTAGGTGTTGGTATACGATAGCTCCTTTTAATGACGCC
CGAACCCCTGTGGCAGCATCGTGCCCAATTTACAACAATTCGAGGAGCGG
GCCGATATCTCACCCTTACCAATCAAAATACCCTTGCTGAGAACCAGGTG
CAATCCATGTAGAACTGCAAACATTTTCGCCCATACTCAGTTACGAGTTG
CATTTTTTATCATTTAATGTTGTAATCCGATGGTAGAGTACTTCACAAGA
ACTTTTCACATTAAACGGGGAATTTCAACAGGCGGAAGCAGCAATACAGT
ATGCTTCAGGACATCATCAGTTACAATAATAATACCCTGATCGCTTGGGT
TTATTATTGTCTGCGTAACGGATTTGGAGAGTAAAAATCGCGGATTGCTT
ATAGTTTTTGGCAACACATCTACCTCCAATACTCGTTTGCCATCGGCTTA
TCCAGGTACCTCAAATCCCAAAGAACGCAGAAAATGGGCACTTCTCGAGA
CTTGAGTACAAGAGCGAGCCGTACGCGGACATGGAAAAGTTCTCCAAAAC
ACAGCCGTTAGACAAGAGAAAGCTTGGCTTCGGGTGAGAAACGGCAGCTA
GAGACTGTTACGAAACATTTGTTTAACTATGTAACCGTCGTGATCAGGTT
GTTTCGGAGGTGTTAGGAACCTTCGAGAAATAGAAGGACACGTGCTTGGT
GTTTGAGTCGTGAGGGTGCACGGCGGTGTTGTCAATGCCCCAACCCGTTA
GTGAATAATTGCCAGTGTCAGTATTTGTATTTTGTTCCATGAGGCTGCAA
GAGCAACGGACAACCATCGCCTCCACTTAACAACAAAGTTCACTGTCAGG
TTTTCATAGGATTAGGATTGCACAATAGACGTTGCTTTACAGGAAAAATC
GGACCAATCCGGCTGACTGTTCTAATCCGGCTGACTAACCGTGCTTTTGC
TGCTTGCTTAGACAGCTTCAATTTTTCCACAGCGCCGCGTTTAGTTAGAG
CCCAACCAACCAAAACCGGAACCACACTTGACCTCTCTTCATACTCTCCC
CTTTCAGTAGACCACGGACAGTTAGCAAAACCAAAAACCAATGTTCTCGA
CTTTTCCTGTGGGCTCCTAGACCCTCCTTACTGACTTTATTTTGTTTCTA
TCTTGTGTTGCAGAACTAAGGATGCCTTCAGACCCGGGGAATTCACTGCA
ACTATCCGTACCGAGCAGTACCGCGATCTTCTACGAGCAGAAAAAAACAT
AATGGAGCAGCACCGGGACTCTGAAAAGGAGATAACAATGATCGAGGTAT
ACACCTTTCTTAGGGACAATATAGGGTTATACTTCGGATCAGGACTTAGT
GTGGGAAGGACTTTAGGATTATCGAAGGAGTAACAGAGACCAACAGATAT
TTAGTAGAGTAACTTTGAACTATGGGGCGAGGAGACGGGGTGACATCCTT
CCACATTCTCGCGATTGCACACGTGTTATTCGCAATGCACTGGGGAGTAT
TGCGTTAAATATTTCCGGAAAGTTTCAGAGCACAAGGCACAGGCGACTGG
AATCTTTGGCACCCTTCGACGGTAGCCGTACGTGAGCTGGGTTTCGAATC
CTTGGTCGTTCAGGTCGTTAGAGAGGGGCTTTCGCCACATGTGCTCCTTG
GGCAGTGGGGCACAGGATAGATAATCCAATGCGCATTTATTTTTTATTCC
GTGGGCTCTTATTATACAGACAGCCGCGATTCTATCTCTAGCGTTTTGCT
CGTGAAATTGTCTGTCGTCAAACGTGAGGAGGACGACTCATGCGCAACGG
ATTCGGAACGTTACCTAGGTGTTGTAACCATAGCTCTCCACGGGATAACA
TAACAATAGTCTGGTTTGGCGTGTAATCTTTCTGCGGTGTGAGGTCTATC
TCTCTATCGGCATGAAAGAAACACCGAGAAATCTGGTTAGTGTTGACCGG
GGTTGCTACCACGACGATAAGCAGCAACCACACGGGCCAGTAGGAGTGCG
ACGGCAGTTCGGCCGCGGAACGATGTTATCGGCACGCCGCTTCCGAACGA
TTTACGCTGAGCATGTACCGCTCGTTTTTTTTTCTACATTTACCTTGCGT
TTAGCCATCATCAGATCTTCCGAGGCTCTGACATTAAGGTACAAATAAAC
CACGCGCCCACGATCCATGGAAATCTCCAGAGTATTTTTTTAGGCAGTTC
GCGGGGTCTTGTCTCTATCGTTTGTCGCAGCGGGCCGAAAAGCAAATGAC
CGAGCAACGCACCTTTCCTGCCGGACTCAATGAGATCGAACACCTCTACG
ACATCGGTCGCAACCAGGTGCGTCACGCCATACTACAAAGGCACTTACGT
TGAACTTAAATCCGTCACGCAAGGAAGTTGTTTGAGTTCGGGCACATATT
TCCGCAGGAGGATCAAAGTAATAAATAGGAATTTGATGTCAAAGAGGACC
ACAGAATGCCCCAAGACACGTGACAACGTTAAGCTCAGCCTTCACTTTTT
CATGTTTCAGATTACGGAATTCGACCCCAAGAATTCACGGGATAGATTCT
ACGCGCTGTCGATCGGCGCGGAGAAGAGGAGAGGCCCTTACCGCACCATG
GCACAGGTAAAAGTGATGTACTTTATGGGGTACTGATAGAGCTTGGCACA
TCGGGAAAAACTGTTCCAAACAGTATATTGGTGAGATTGAGATCCACCTT
TGAAATGGAGATTCTGGGTTATATTGGAAATAGGCTGTACCCTGACGATC
AATTTCGAGGTGAAGCTTTTCGAATGTTCGATTTTTGGACAGATCGAATC
TGAACTGACTGAGCGCTTGCCTGGGGAAGGCTTTCTTCTTACGGTCATGC
GTACAGAATAACCGGAAAAGAATAAGTCAGATTCCAAAATATCCCGAACG
GGTTCTTCAAGTTATTGAACTATTGGTCTTATCAACAGTAGGGATATCAA
TGCAGAGGTGCGAAATAAACCGTTCACGCATGGACTCCGAATAGTTCCGA
AATGTTCCTGATCTGCTCGGCCCTTTCAGCTATGGTTTATGCTACTGGTC
TAATTCATTGTGCCTGAAAAAGCACATTCTTGTTCCGATATAAATAACCC
CGACCGGCTTATACCCCGAGGAGTTTAAAGTAATCGTGGATTTATGAACG
GCGGCATTTTCACCCGAAATCAGTTTGTTTCACGAACGCTTCCCCTCACT
TTCGAAAAACAGCTCCCACACCTACTTTCGTTTTCCAAGCGACAAAAGTG
TTGGTCCTGTTGAGGACTGTTGTACTCTCTGTCTGTGGTGTAAAACACTC
CAAAAGTATGTAACAGCGTATTGGTGAAACGGGGACCCAACTTTGAGATG
GGGACCCAACTTTGAGATGGCGACCTTGGGTTATATTGGAAATAGCCCGT
ATCCTGAAGATCCGAAATTGATTTTCAGGAGAAGGCCTATTTCCAATAGA
ACCCAGGGTCCCCATCTCAAAGTTGGGTTCCCATTTCACCAATATGCTGT
TATGTGTAGAACGCCCCATCACCATGCATGATGATCAGATCTCGCGAAAT
GGTACCTACCGTAGCTGTGTTGCAGGCAGTTCAAAAGCGATCTGTTCAAA
ATTCGAGCATTGGAAAGCTCTCACCCCGAAATTGATCTTCAGGATACAGC
CTATATCCAATATAACCCAGGATCTCCATCTCGAAGTCGGATCTCAATCT
CACCAATATACTGTTTCCACGGATAGTTTGTCCTGTTGCATCACGTGTGC
TAGGTGCGGCACAGCTGGTAAATAATCCACACACAAGTTACAGTGCCTGT
ATTAAGTTCGGACTATGGATCACCGCAAGTGTAGACTACGTCCTGTGGTA
GCCGTTGCGCACTAGGGCAGCATCTGGCGCAAATTTTAGTGGACAACCCC
CTAGATGGCAGCGTGTTCCCAGATCGATTTTCTCGACAGACATGATGCGT
CAAATAACGAAAGAGCCCATATATCCAATGACGGATATCGACGGAGACAT
TTACAGGACACGGCATTGGGACCCCGGCATCACAATTTTTGAAAAAAAGG
AGTAAGAATTTTTCTTTCACCTGTTATGCCCTGTATGCTCGGCATAATCT
GTATGCGCTGTACGCGATGTACAGTATGAATGTTCTATATGCACGGCATG
TTCTGTACGCTCTATATGTGCTGTATGATCTTATGCTCTGTATGCTCTGT
AACTTCAAGTCCAACGTTACAACCTAAGGTTATTAGGATTAGGGTTCTCT
GCAGCCAAAGCCATGGCAAGAAGCCATACGTTGAAGCTACACTTAAAATC
GAAATACCCTCGGGTGAAGGCTTTGGGGAAAAGTACTCGGTGTTCCCTCT
TGTTCCACTGCTGCACACTGGAAACATCACTTCTCGTTAGGCGCGTGCTC
GACAACGGCGCTTTAATCATGCTAACGAGTTTTTACGTTTACGACAAAGC
TTGCGACACGTTAGTTATTAAGCACATATGACTCTCCGGATACAGTAAGA
GCATTTCTACCCCTGTGTCGTCCATTCTCCGCTTCCTCTCTGTGCAACGA
GAGGACGTACATAACTTCGTTCGACTGGTCCATTGTTTTGCACAGGACAT
TGGATCAGAGGCCTGGGGACACAAGTACCAATCTCCGGAGTTTGGGCCCA
TTCATCATGTCAAGTTCTTCTACGACAAGAGCCATCTCTCCTTGCCGCAG
AGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1542:18976..23931-

>mRNA_H-paniculata_contig1542.3178.1 ID=mRNA_H-paniculata_contig1542.3178.1|Name=mRNA_H-paniculata_contig1542.3178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig1542:18976..23931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGATGGTGGGTCGTACATTACTATCGGAGACACCTACAAGGGGAA
CAAGATAATTCTACCGGATAGATGGAAGGGCAAGGGGCTGTCGATGGTAG
ATGGTGGGTCGTACATTACTATCGGAGACACCTACAAGGGGAACAAGATA
ATTCTACCGGATAGATGGAAGGGCAAGGGGCTGTCGGTACCTCAAATCCC
AAAGAACGCAGAAAATGGGCACTTCTCGAGACTTGAGTACAAGAGCGAGC
CGTACGCGGACATGGAAAAGTTCTCCAAAACACAGCCGTTAGACAAGAGA
AAGCTTGGCTTCGGGTACCTCAAATCCCAAAGAACGCAGAAAATGGGCAC
TTCTCGAGACTTGAGTACAAGAGCGAGCCGTACGCGGACATGGAAAAGTT
CTCCAAAACACAGCCGTTAGACAAGAGAAAGCTTGGCTTCGGAACTAAGG
ATGCCTTCAGACCCGGGGAATTCACTGCAACTATCCGTACCGAGCAGTAC
CGCGATCTTCTACGAGCAGAAAAAAACATAATGGAGCAGCACCGGGACTC
TGAAAAGGAGATAACAATGATCGAGAACTAAGGATGCCTTCAGACCCGGG
GAATTCACTGCAACTATCCGTACCGAGCAGTACCGCGATCTTCTACGAGC
AGAAAAAAACATAATGGAGCAGCACCGGGACTCTGAAAAGGAGATAACAA
TGATCGAGCGGGCCGAAAAGCAAATGACCGAGCAACGCACCTTTCCTGCC
GGACTCAATGAGATCGAACACCTCTACGACATCGGTCGCAACCAGCGGGC
CGAAAAGCAAATGACCGAGCAACGCACCTTTCCTGCCGGACTCAATGAGA
TCGAACACCTCTACGACATCGGTCGCAACCAGATTACGGAATTCGACCCC
AAGAATTCACGGGATAGATTCTACGCGCTGTCGATCGGCGCGGAGAAGAG
GAGAGGCCCTTACCGCACCATGGCACAGATTACGGAATTCGACCCCAAGA
ATTCACGGGATAGATTCTACGCGCTGTCGATCGGCGCGGAGAAGAGGAGA
GGCCCTTACCGCACCATGGCACAGGACATTGGATCAGAGGCCTGGGGACA
CAAGTACCAATCTCCGGAGTTTGGGCCCATTCATCATGTCAAGTTCTTCT
ACGACAAGAGCCATCTCTCCTTGCCGCAGAGCTAGGACATTGGATCAGAG
GCCTGGGGACACAAGTACCAATCTCCGGAGTTTGGGCCCATTCATCATGT
CAAGTTCTTCTACGACAAGAGCCATCTCTCCTTGCCGCAGAGCTAG
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