mRNA_H-paniculata_contig15414.3177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15414.3177.1
Unique NamemRNA_H-paniculata_contig15414.3177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: D7G3Y4_ECTSI (Trafficking protein particle complex subunit 2, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.110e-22
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  445 MSVFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            MSVFMIVGRNEPLYEAD+ +GG G SS       S EESAHLNQFI+HSALDMVERKQWSTPAT
Sbjct:    1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGR---SSEESAHLNQFIVHSALDMVERKQWSTPAT 61
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.010e-21
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  445 MSVFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            MSVFMIVGRNEPLYEAD+ +GG G SS       S EESAHLNQFI+HSALDMVERKQWSTPAT
Sbjct:    1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGR---SSEESAHLNQFIVHSALDMVERKQWSTPAT 61
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A4D9CUE9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUE9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.160e-9
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  445 MSVFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTP 630
            MS+F+IVG+NEP++EAD S       +       + E +A LNQFI+HS+LDM+E+  WS+P
Sbjct:    1 MSLFVIVGKNEPIFEADFSTSSTSTGASPNKVSAAEEGNAQLNQFILHSSLDMMEKAMWSSP 62
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.520e-9
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  451 VFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQW 621
            VFMIVGRNEPLYEA+      G  S       +  E++HL+QFIIHS+LD+VERKQW
Sbjct:    4 VFMIVGRNEPLYEAEF-----GLKSANPAQRAAERENSHLSQFIIHSSLDLVERKQW 55
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A433D798_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D798_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 7.240e-7
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  457 MIVG-RNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            +IVG R++P+YEAD+   G    +         EES HLNQFIIHSALD+VE  QW+T AT
Sbjct:    8 VIVGSRDDPVYEADL---GPSSKAPPVPEGTKKEESKHLNQFIIHSALDIVEEVQWNTTAT 65
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A7S2FMM3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMM3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-6
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:  388 CYQNFNLHC------GVPQYEQRRLMSVFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            C  N   +C      GV +  Q  L  +FMIVG  EPLY  ++SA              + E  +HLNQFI+HSALD+V+R  ++T AT
Sbjct:   29 CVLNIEYNCRPLQLGGVARRFQLGLHMLFMIVGSKEPLYSLELSA------------QAADESQSHLNQFIVHSALDLVDRMAYTTNAT 105
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A7S2SFI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFI4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.490e-6
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  451 VFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            +F+I+G+NEP+YE D++ G             S  ++AHLNQF+ HSALD+VE+  W+  +T
Sbjct:   13 LFLIIGKNEPVYECDLAPG-------------SQRDAAHLNQFVAHSALDLVEQAAWTNNST 61
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A433QJ61_9FUNG (Trafficking protein particle complex subunit n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QJ61_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 2.690e-6
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  457 MIVG-RNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWSTPAT 636
            +IVG R++P+YEAD+   G    +         EES HLNQFIIHSALD+VE  QW+T AT
Sbjct:    8 VIVGSRDDPVYEADL---GPSSKAPPVPEGTKKEESKHLNQFIIHSALDIVEEVQWNTTAT 65
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: K0TLI7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLI7_THAOC)

HSP 1 Score: 55.1 bits (131), Expect = 9.000e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  451 VFMIVGRNEPLYEADISAG-GVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWST 627
            +F+IVG+NEPLYEA+I    G+  SS       SG+ S   N F++HSALD+VE+  W+T
Sbjct:    7 LFVIVGKNEPLYEAEIDTSTGIHSSS-------SGDLSTRQNYFVLHSALDLVEKSAWTT 59
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BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Match: A0A7R9WLH9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLH9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.200e-5
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  451 VFMIVGRNEPLYEADISAGGVGGSSXXXXXXXSGEESAHLNQFIIHSALDMVERKQWST 627
            +F+IVG+NEPLYEA+I+  G  G+S         +  A  N F++HSALD+VE+  W+T
Sbjct:    9 LFVIVGQNEPLYEAEITKRGAAGNS---------DAVARQNYFVVHSALDLVEKAVWTT 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15414.3177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G3Y4_ECTSI7.110e-2278.13Trafficking protein particle complex subunit 2, pu... [more]
A0A6H5KJU0_9PHAE6.010e-2178.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CUE9_9STRA5.160e-946.77Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z2S7_9STRA8.520e-957.89Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A433D798_9FUNG7.240e-752.46Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S2FMM3_9STRA2.130e-639.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SFI4_9STRA2.490e-641.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A433QJ61_9FUNG2.690e-652.46Trafficking protein particle complex subunit n=1 T... [more]
K0TLI7_THAOC9.000e-648.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9WLH9_9STRA1.200e-545.76Trafficking protein particle complex subunit n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15414contigH-paniculata_contig15414:313..3268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size965
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15414.3177.1prot_H-paniculata_contig15414.3177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15414 757..3095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.6550121-UTR-H-paniculata_contig15414:312..7561622929234.6550121-UTR-H-paniculata_contig15414:312..756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15414 313..756 +
1691480781.4372468-UTR-H-paniculata_contig15414:312..7561691480781.4372468-UTR-H-paniculata_contig15414:312..756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15414 313..756 +
1622929234.742443-UTR-H-paniculata_contig15414:3095..32681622929234.742443-UTR-H-paniculata_contig15414:3095..3268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15414 3096..3268 +
1691480781.4611082-UTR-H-paniculata_contig15414:3095..32681691480781.4611082-UTR-H-paniculata_contig15414:3095..3268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15414 3096..3268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929234.6782084-CDS-H-paniculata_contig15414:756..9471622929234.6782084-CDS-H-paniculata_contig15414:756..947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15414 757..947 +
1691480781.4455347-CDS-H-paniculata_contig15414:756..9471691480781.4455347-CDS-H-paniculata_contig15414:756..947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15414 757..947 +
1622929234.6915689-CDS-H-paniculata_contig15414:2938..30951622929234.6915689-CDS-H-paniculata_contig15414:2938..3095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15414 2939..3095 +
1691480781.4534607-CDS-H-paniculata_contig15414:2938..30951691480781.4534607-CDS-H-paniculata_contig15414:2938..3095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15414 2939..3095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15414.3177.1

>prot_H-paniculata_contig15414.3177.1 ID=prot_H-paniculata_contig15414.3177.1|Name=mRNA_H-paniculata_contig15414.3177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MSVFMIVGRNEPLYEADISAGGVGGSSGNSGGKSSGEESAHLNQFIIHSA
LDMVERKQWSTPATCNTVCAFGTLTGPRTCIASIERSQPVGQRQQHNTGS
RVAHGLKEIDNGMLQ*
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mRNA from alignment at H-paniculata_contig15414:313..3268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15414.3177.1 ID=mRNA_H-paniculata_contig15414.3177.1|Name=mRNA_H-paniculata_contig15414.3177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2956bp|location=Sequence derived from alignment at H-paniculata_contig15414:313..3268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGTCTTCCAAGGTGAAAAGGTAGTGATTCGCACAGGATCCCCAGCTT
AGTAGTTAGAATCACATTTTTTTAAACGGCCGTTGTTCATTCTTTTGTGC
TGGTCTTTTTTTTTGCGTTCTAAGCAGAGGTCGAGATGGATGCAAGAGGA
GCGGCGTAAACTGCATCTCCTTGCCCTCCCATTGCACAACCATGGAGGGG
GTGTTATTCATCATCACAAGATGTATCACTCCACCAGTGCTTTGCCATTA
TTCAGACAAGCTTGTATTTGGGAATTGTGTCCATACAGAGGAGCACGAAG
CTGTGTAACCCGAGAACGGTCAGTATCATCAAGGGTAATTGTAAGCAGGT
GTTTGCCCGCTCTTCCTTCCGGTTTCATCCAAGATCTTGCTACCAGAATT
TCAACTTGCATTGCGGTGTACCGCAGTACGAACAACGTCGTCTGATGTCC
GTGTTCATGATCGTGGGCCGAAACGAGCCATTGTACGAGGCGGATATCAG
CGCTGGTGGGGTTGGAGGCAGCAGCGGTAACAGTGGGGGAAAGTCGTCCG
GGGAGGAGTCGGCGCACCTCAACCAGTTCATCATTCACTCCGCACTAGAT
ATGGTGGAGCGTAAACAGTGGTCTACGCCGGCTACGTGAGTGTCGCTATA
TATTCTTCTGCCACGGTTGGCAGACGGCTTCATCTCTTGTAGAAACACCG
TAATGCCACCCTACATTGCATACATACAGTGGTTTCCACAAGAGTAGTCA
CAGGCAGCCAAGTGAGTGTGCTCCTAGCCGTGTTCCATACACCGCTGACC
GCTGACTTTATGTGAAAGTAAGAAATTGGATTAATTATACGTCCATACCA
AGAATGTGTCTTCCATGTCATTGGCTGGGCGAGAACAAAAATGGATCCAA
TATCGAGGTGGCGTGCAGCACCAAGTCGATTACCCGTCTGTGCTGCATGT
TATTGGCTGTACCGCCCTTACTAGCTGTCTGAATAGCGGCAGCTCCTTTT
CCCTGTAACCATACCATGGGCATTGTTCGCTTTGTCTTTTCGGGTGGCGA
TCCATGGCCTGGCAAAACAAGGACCTTTATTTTTCATCCTGTTCACGTCA
CCATCGCGAACCGGGCGAGAACCGCACACATGACCAACCGCGAACCGGTT
CGTGACATGTGTTGAAATGCCCGGTTATGGGTAAGGCCGCGGTGCGTTAT
TGACCATGAATAAAAAAAGTCGAAGATGAAAAAATATATTTGTCTTCGGC
TCTCTGATTTTACCCATACTCTGTGCCCCTACGACCACCGCAGGAAGCTA
TTGGGAAAAGTTCGATATCGTATTATTTCCATAAAACGAGTCACGGTGGA
CTTATTTATCATGAACTTTATTAAATCGAAATTGAAAGAGGATAATCAAA
ACCGAATTTGTACGGGAACAAAAATTGCGACCGAGGAGATGGATAGTGAA
GTGTGCCATAGGGCTGGTGGTACATCTGAGAGCTCCACGCCCCCGGGTAC
AACCAGATGTGACTCGAGGTGAAGCTCTCAATTACCTGAGGAGGATGTAC
GTGGTATTGGTTGAATCCGTTCCAAACTGACGGAGAGCCGCGGTTTTGCG
TGCGTCGACATCAAGTCTGACACAGAAACTTTGTTACGAACCGTTGAACC
CGTTCCAAATTGATGGAGAGCCGCCGTTTTTGGGTACGTCGCGTCGCCAA
GTCTGACAGAAACAATTTGTCACAAATAGTTGAATCCGTTCCAAACTGAT
GGAGAGCCCCCGTTTTTGGGTGCGTCGCCTCCAAGTCTTGAAAAGGTCAT
ATGTTACAAGCAAAGACCATGCGCACTAGCTCTGATGATAGCCCTTGTTC
AGCTGCACGCACCAGGCTTTGTTTAGCGGAAATCGGTTCTGTACTGCGGG
AGCTATGTGAAACAATTCGCGTGACGCCGGCATTATAAATAGTGTGGTTT
TTTTTTACGTTTTGTAAAAAACTGCGTGTTGCAGACTTGGTGGCGACGCT
AAGCACGAAAAAATGGCGGCTCTACATCAGTGTGGAACGTATTCAACAGT
TTATAACAAACTGTTTGTGCCAGACTTAGCGGCGACGCGACGAACGCGAA
ATGGTTACTCCACATCAGTTCGGAACGGACCCAACCATTTGTAGCATGTA
TCTATGGTAGACTTTGGCGGCGACGCGACGCACCCAAATACGGTGTCTCT
CCATCAGTTTGGAATTTCCTGTATCTGTTGGTGTCTCGCATGCATCTCGT
GCCGGGCAACCTCTCTGAGCCCAATAGCCCGTGCCAATAGTCAACTATGA
ACGATCATATTTTCGCCGTCAAGCTGCGTATCGTTAACGCTTTCACTGGT
GAGGGGATCTAGTGTGACTAACCTCTTCCGACACAAGTGCTCTCATAGTC
CCCTGTCCCAAAATGAGAGGGGGTGCAATTTGAGGGGGGGGATACGGCGA
GGATGACATCATATCAGTCTTTCACAGGGCTACCACGAAATTAATAGCAT
CGTCGGACATGAAATGACAAAATGTATTGCTAAACGAACAGAATCAAGGA
CCACTAGGGGCTAGAGAGTGAATGTGACCATTTTCATTTCAATCATTGCA
CATCCACGGCTGGTGGTGTGCTACAGGTGCAACACGGTGTGCGCTTTTGG
TACCCTAACAGGACCCAGAACATGTATTGCTTCCATCGAGCGGTCTCAGC
CAGTTGGACAGCGCCAACAGCACAATACAGGCAGCAGAGTTGCGCACGGG
TTGAAAGAAATAGACAATGGCATGCTGCAGTAGTACAATAGGTGTTGCTC
TGCTGCAGCACCATCTCTTCTGCGGGCGTGGTGATACTATGTAGGAGTAA
CACAACGAAGAGCGGGAGACATGTTTGCAGGCACCAGCACACCGAGAGTT
CCGTAGCGAGTGATACACTGCATGTGTGGCGTCCTGTTATGCGTGGTAGA
CTCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig15414:313..3268+

>mRNA_H-paniculata_contig15414.3177.1 ID=mRNA_H-paniculata_contig15414.3177.1|Name=mRNA_H-paniculata_contig15414.3177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig15414:313..3268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGTGTTCATGATCGTGGGCCGAAACGAGCCATTGTACGAGGCGGA
TATCAGCGCTGGTGGGGTTGGAGGCAGCAGCGGTAACAGTGGGGGAAAGT
CGTCCGGGGAGGAGTCGGCGCACCTCAACCAGTTCATCATTCACTCCGCA
CTAGATATGGTGGAGCGTAAACAGTGGTCTACGCCGGCTACATGTCCGTG
TTCATGATCGTGGGCCGAAACGAGCCATTGTACGAGGCGGATATCAGCGC
TGGTGGGGTTGGAGGCAGCAGCGGTAACAGTGGGGGAAAGTCGTCCGGGG
AGGAGTCGGCGCACCTCAACCAGTTCATCATTCACTCCGCACTAGATATG
GTGGAGCGTAAACAGTGGTCTACGCCGGCTACGTGCAACACGGTGTGCGC
TTTTGGTACCCTAACAGGACCCAGAACATGTATTGCTTCCATCGAGCGGT
CTCAGCCAGTTGGACAGCGCCAACAGCACAATACAGGCAGCAGAGTTGCG
CACGGGTTGAAAGAAATAGACAATGGCATGCTGCAGTAGGTGCAACACGG
TGTGCGCTTTTGGTACCCTAACAGGACCCAGAACATGTATTGCTTCCATC
GAGCGGTCTCAGCCAGTTGGACAGCGCCAACAGCACAATACAGGCAGCAG
AGTTGCGCACGGGTTGAAAGAAATAGACAATGGCATGCTGCAGTAG
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