mRNA_H-paniculata_contig15411.3176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig15411.3176.1
Unique Name	mRNA_H-paniculata_contig15411.3176.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig15411.3176.1 vs. uniprot
Match: A0A6H5L3J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.970e-11
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 1

Query:  109 RGVVKKLRLRTEVGRMWPSSSATTTARTSLPSSLGFGRGATGAXXXXXGASDGFVSPLDMRRRAKLKTLVQFLVLEVVEAALARCVP 369
            RGVVKKLR RTEVGR  PS   T TA    P+S+        A     G  DGFVSPLD+RR+AKL+ L   LVL+ VEAALA+C P
Sbjct:  369 RGVVKKLRWRTEVGRTIPS---TRTAAARPPASV--------APVSSSGNDDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQCKP 444

[Close]

BLAST of mRNA_H-paniculata_contig15411.3176.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.490e-10
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 1

Query:  109 RGVVKKLRLRTEVGRMWPSSSATTTARTSLPSSLGFGRGATGAXXXXXGASDGFVSPLDMRRRAKLKTLVQFLVLEVVEAALARCVP 369
            RGVVKKLR RTEVGR  PS   T  A    P+S+        A     G  DGFVSPLD+RR+AKL+ L   LVL+ VEAALA+C P
Sbjct:  228 RGVVKKLRWRTEVGRTIPS---TRPAAARPPASV--------APVSSTGDDDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQCKP 303

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig15411.3176.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig15411.3176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L3J9_9PHAE	3.970e-11	55.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FHG7_ECTSI	2.490e-10	54.02	LNR domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig15411	contig	H-paniculata_contig15411:87..3103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	73.6
Seed ortholog evalue	1.8e-10
Seed eggNOG ortholog	2880.D7FHG7
KEGG ko	ko:K03514,ko:K11700
KEGG Pathway	ko03018,map03018
KEGG Module	M00393
Hectar predicted targeting category	other localisation
GOs	GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	RNA uridylyltransferase activity
EggNOG OGs	COG5260@1,KOG1906@2759
EC	2.7.7.19
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Exons	2
Model size	872
Cds size	870
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929234.5929024-CDS-H-paniculata_contig15411:87..799	1622929234.5929024-CDS-H-paniculata_contig15411:87..799	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig15411 88..799 -
1691480781.4192393-CDS-H-paniculata_contig15411:87..799	1691480781.4192393-CDS-H-paniculata_contig15411:87..799	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig15411 88..799 -
1622929234.60996-CDS-H-paniculata_contig15411:2945..3103	1622929234.60996-CDS-H-paniculata_contig15411:2945..3103	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig15411 2946..3103 -
1691480781.4292846-CDS-H-paniculata_contig15411:2945..3103	1691480781.4292846-CDS-H-paniculata_contig15411:2945..3103	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig15411 2946..3103 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig15411.3176.1	prot_H-paniculata_contig15411.3176.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig15411 88..3103 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig15411:87..3103-
coding sequence from alignment at H-paniculata_contig15411:87..3103-

protein sequence of mRNA_H-paniculata_contig15411.3176.1

>prot_H-paniculata_contig15411.3176.1 ID=prot_H-paniculata_contig15411.3176.1|Name=mRNA_H-paniculata_contig15411.3176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
KHGRSCAGGNGGVAEEGSEGGVCGGDEESPDDEEEQRGVVKKLRLRTEVG
RMWPSSSATTTARTSLPSSLGFGRGATGAGAGAAGASDGFVSPLDMRRRA
KLKTLVQFLVLEVVEAALARCVPGMKKPPSMSPEKRLKQQRSRRSGAGAS
VSASTTLSQTHNAVTAVAAVAAPSMPARTTSPTGKPSSAARIMSVAARVM
AAPGFSPKKTSAGVAGGAMDTQQSLPPPPPPPPPVSLTRAWPSPAESLSS
SPRPAWNIPTAGASAAVAVHRSTAGGGSRKDARPAMTLMP

mRNA from alignment at H-paniculata_contig15411:87..3103-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig15411.3176.1 ID=mRNA_H-paniculata_contig15411.3176.1|Name=mRNA_H-paniculata_contig15411.3176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3017bp|location=Sequence derived from alignment at H-paniculata_contig15411:87..3103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCATGGTCGTTCTTGCGCCGGAGGGAATGGAGGGGTAGCTGAAGAGGG
TAGTGAGGGTGGGGTCTGTGGAGGGGACGAGGAGTCGCCAGATGATGAGG
AGGAACAGCGAGGAGTCGTGAAGAAACTCAGATTGAGGACAGAGGTCGGG
CGCATGTGGTAAGAGGTTTATGATGGATACCTTTGGGAACCGGGCTTCAC
AACGGCCGCCGGAATGCAGTGTTTTATATATATATATATATATATATATA
ACCCCTATGGCACCGGATCCTGAAAAAGAATAAAGAAGGAAGTTGATTGT
TCCGCGGCCAAAACCGTTGTGATAGGGGGCGGCCAGGGGGAGGACGGGGG
AGCAGAACAAATATGAGGAGTATGACTATAACACGTGTCTCGTGGTTCCG
ACCCCTGTATGTTCGCGGATGCTTTGTATGTATGTTCAAATCTTCGTGCA
GGGCACCATTTCTAGGGCAGAGGTCGTACAGGGATTGTAAAGGGTTCGAT
GCCGTAGGGGTTAGCGACGAGCAGTCATTGTGAGTGCCAAGGCCGAAGAT
AGTCTACAGCATGCTTACGCCGTGAAAAAGAGAAATCGGCCGAAGAACGC
CAAAAAGTCAACGTTTCTTTTTTCCGAGTTTTATGGAGAAAATTCCTAAA
AAGGGCCTTTTTTTCAGCCGAGTACTTTTTTCACGGCGTGTGCTTTGATG
TTAAAAGTCAACTATTTGACCCCAAAAAACATGTAAAATTCCACTAATAT
TATCAATAATAATAATAATAATAATAATAATAATAAATCGGAGATGTTTT
TAAGTGCCTCTATAATCGTGACTGAATGTACTTTCAAGACAGAGGAAATA
TACATACTGTATCTGTATATGCGTGGGGCAAGAGCTACAGGCAGCCACTC
CCATAACTCCACGGTTGAACAATGGATCCACTTTCCGTGGCGTGGCACCA
CCCAATCAATGCCAACCATAGCACACACCGTGGACGAAAGTAACGAGCAT
ATATTATTTTCTGGCGTCTGGCAGGTCCCAGGCAGGGGGGCGTGTCGTTT
TTTTAAGTCGATGAAGGTCATGTTTTTCGTCGATTTTTGTGTGTTGGAGC
GAGATCAAGTAGGCACCAAGCTTGTGTGGTCACGACCAAACAATATAATA
CCCAAGCCTTATGCGGGAAAAGAGGTTTTGTCCTCTATAAACGATCGTGG
TGTAATTTACCCTGTCTATATGGTACCTCTTTACATCACCCGTCCCGTTT
TTATGAGTCTCGTTTTTGATACTTTTTTACCGAGTAGAGGTTCTAGAGGT
CAGTTTTTCGCCCACTAGCGGTGATGTGATAATTTTTATACCACCGTTGT
TCACGGACCTACGCCCGATCGGGTAGGGTAGCTCGTGAACTGAGCATGAC
TGGAAGTCTAGTCAGAGGGCTTTAAGTGGGTGCAACCCCCACACTGCCTA
CTTGGTTCGGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGAATAAATAA
CTTTGTTCTGTAAAAGGAAATGTAGAAATACTTTGGTAACATACTGAAGT
ATAGAAGCATCGGTAAATGTTTTTTGCCTCAGCCTTCCGGGGGTTGAAAA
AAAATTAAATACCACCGTTGTTTATTTACATACCTCATGTGTGTGTTAAG
GTCAAAATTCTCCGCAGGAGACTAGTTCGTGAACCCTGTTGTGGGCCCTT
ACAGTTGTTGCGACTTTTGAGCATCGGCTTGACCCTTCGGTTTCTTTTTT
GGTCATCGCGGCGATTGGGGCTGGGTTTGAGCCCGTGACGTTGTGGTATC
TACCTAGACAGGGTTGTCTCTTGGTGTCGCGTTTGTGAAATAGGTGTTTT
GTCCTCTACAGATGGTTGTGATAATTTACCGATTATGCATGGTATCTCTT
CACACTTGGACTGTAGAGGAGATTGGGGGGCCATGGGCTCCTTTGTAAGG
GATTTCATAAAGAACATGTGTGTGTTCCATGCGTATCGTTTTTGTACGGA
AACGATACACGAAAGTACCACTTATATACAGGTATATATTACTGCTTGCA
TCTTTACATCTTTGTTCAAAAGTTGGTGGCATTATGCGGCGAGTTTCGGT
GGAAATGTTGATATTTTGCCGCTGTTTTGTTCGCACTTGTTGTTGCCCGC
TCATGTGTGTTTTTGTTGATCTTTTTTGCTTTTTAGCTTTTTTCTTGTTT
TTCATGAAAATTGCTCATTTCTGACAGACGGACGTGCGCCATTTCTTGAC
AAGTTGTGTCTCGTTCATGCGTCTGCCCCGTGCCCATCGTACCATTTGCT
GTAGGCCCAGCAGTAGCGCGACGACGACGGCACGAACGAGTCTTCCAAGC
TCTCTCGGGTTCGGTCGTGGTGCCACCGGTGCCGGTGCGGGTGCCGCCGG
GGCCAGCGACGGTTTCGTAAGCCCTCTCGATATGCGCCGAAGAGCCAAGC
TCAAGACCCTGGTGCAGTTTTTAGTTCTTGAAGTGGTGGAGGCCGCGCTC
GCGCGGTGCGTCCCCGGTATGAAAAAGCCTCCGTCGATGTCCCCAGAGAA
GCGTTTGAAGCAGCAACGCTCTCGTCGTAGTGGCGCCGGCGCTAGCGTGT
CAGCATCCACAACGTTATCCCAGACTCATAATGCGGTCACTGCTGTCGCC
GCCGTGGCAGCTCCATCAATGCCCGCTCGGACAACAAGCCCGACCGGCAA
ACCGTCGTCTGCCGCACGAATAATGAGCGTCGCGGCAAGAGTCATGGCGG
CGCCAGGATTTTCACCTAAAAAGACCTCTGCCGGGGTCGCCGGAGGGGCT
ATGGACACCCAACAATCCCTGCCTCCACCGCCGCCGCCGCCGCCGCCGGT
GTCTTTGACGCGAGCTTGGCCCTCTCCAGCAGAGTCTTTATCATCCTCTC
CTCGCCCTGCATGGAACATCCCGACCGCTGGTGCGTCGGCGGCCGTCGCT
GTGCATCGGAGCACCGCGGGAGGTGGATCTAGGAAAGACGCGCGGCCAGC
AATGACTCTGATGCCCC

Coding sequence (CDS) from alignment at H-paniculata_contig15411:87..3103-

>mRNA_H-paniculata_contig15411.3176.1 ID=mRNA_H-paniculata_contig15411.3176.1|Name=mRNA_H-paniculata_contig15411.3176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig15411:87..3103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCATGGTCGTTCTTGCGCCGGAGGGAATGGAGGGGTAGCTGAAGAGGG
TAGTGAGGGTGGGGTCTGTGGAGGGGACGAGGAGTCGCCAGATGATGAGG
AGGAACAGCGAGGAGTCGTGAAGAAACTCAGATTGAGGACAGAGGTCGGG
CGCATGTGAAGCATGGTCGTTCTTGCGCCGGAGGGAATGGAGGGGTAGCT
GAAGAGGGTAGTGAGGGTGGGGTCTGTGGAGGGGACGAGGAGTCGCCAGA
TGATGAGGAGGAACAGCGAGGAGTCGTGAAGAAACTCAGATTGAGGACAG
AGGTCGGGCGCATGTGGCCCAGCAGTAGCGCGACGACGACGGCACGAACG
AGTCTTCCAAGCTCTCTCGGGTTCGGTCGTGGTGCCACCGGTGCCGGTGC
GGGTGCCGCCGGGGCCAGCGACGGTTTCGTAAGCCCTCTCGATATGCGCC
GAAGAGCCAAGCTCAAGACCCTGGTGCAGTTTTTAGTTCTTGAAGTGGTG
GAGGCCGCGCTCGCGCGGTGCGTCCCCGGTATGAAAAAGCCTCCGTCGAT
GTCCCCAGAGAAGCGTTTGAAGCAGCAACGCTCTCGTCGTAGTGGCGCCG
GCGCTAGCGTGTCAGCATCCACAACGTTATCCCAGACTCATAATGCGGTC
ACTGCTGTCGCCGCCGTGGCAGCTCCATCAATGCCCGCTCGGACAACAAG
CCCGACCGGCAAACCGTCGTCTGCCGCACGAATAATGAGCGTCGCGGCAA
GAGTCATGGCGGCGCCAGGATTTTCACCTAAAAAGACCTCTGCCGGGGTC
GCCGGAGGGGCTATGGACACCCAACAATCCCTGCCTCCACCGCCGCCGCC
GCCGCCGCCGGTGTCTTTGACGCGAGCTTGGCCCTCTCCAGCAGAGTCTT
TATCATCCTCTCCTCGCCCTGCATGGAACATCCCGACCGCTGGTGCGTCG
GCGGCCGTCGCTGTGCATCGGAGCACCGCGGGAGGTGGATCTAGGAAAGA
CGCGCGGCCAGCAATGACTCTGATGCCCGCCCAGCAGTAGCGCGACGACG
ACGGCACGAACGAGTCTTCCAAGCTCTCTCGGGTTCGGTCGTGGTGCCAC
CGGTGCCGGTGCGGGTGCCGCCGGGGCCAGCGACGGTTTCGTAAGCCCTC
TCGATATGCGCCGAAGAGCCAAGCTCAAGACCCTGGTGCAGTTTTTAGTT
CTTGAAGTGGTGGAGGCCGCGCTCGCGCGGTGCGTCCCCGGTATGAAAAA
GCCTCCGTCGATGTCCCCAGAGAAGCGTTTGAAGCAGCAACGCTCTCGTC
GTAGTGGCGCCGGCGCTAGCGTGTCAGCATCCACAACGTTATCCCAGACT
CATAATGCGGTCACTGCTGTCGCCGCCGTGGCAGCTCCATCAATGCCCGC
TCGGACAACAAGCCCGACCGGCAAACCGTCGTCTGCCGCACGAATAATGA
GCGTCGCGGCAAGAGTCATGGCGGCGCCAGGATTTTCACCTAAAAAGACC
TCTGCCGGGGTCGCCGGAGGGGCTATGGACACCCAACAATCCCTGCCTCC
ACCGCCGCCGCCGCCGCCGCCGGTGTCTTTGACGCGAGCTTGGCCCTCTC
CAGCAGAGTCTTTATCATCCTCTCCTCGCCCTGCATGGAACATCCCGACC
GCTGGTGCGTCGGCGGCCGTCGCTGTGCATCGGAGCACCGCGGGAGGTGG
ATCTAGGAAAGACGCGCGGCCAGCAATGACTCTGATGCCC