mRNA_H-paniculata_contig15402.3171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15402.3171.1
Unique NamemRNA_H-paniculata_contig15402.3171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.720e-26
Identity = 55/94 (58.51%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 YQEWNKDSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLV 282
            Y++W  D  LPA+KEKMP L  + VV QQDGA+PHTG   P  LN  G   GW V LV QP QSPDLNIN LG F SLK RVW     +ID LV
Sbjct:  271 YKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 98.6 bits (244), Expect = 2.550e-22
Identity = 51/151 (33.77%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   19 DSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDRE 471
            +  +PA++   P    + +  QQD A PH  ID P  L E  +D G++++L+ QP QSPDLN+  LGFF ++++   +E   +++ LVE V ++Y +YD  I+   W        +++ V GGN+F+  H   K  QR+G     V++  E
Sbjct:   63 EEVMPAIRATWPENSCKTIWIQQDNARPHINIDDPEFLEEANKD-GFDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVEVSNE 212          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-20
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 YQEWNKDSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTK 414
            Y+ +  D  +PA++ + PG  G  +  QQD A PH  +D P  L   GR  GWN+ L+AQP QSPD N+  LGFF++++S   +     ID L++ V+  ++     +L++ + +L K   + +   G N +++ H K
Sbjct:  266 YRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLK 402          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI001F5D24F1 (uncharacterized protein LOC124671868 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D24F1)

HSP 1 Score: 97.1 bits (240), Expect = 1.610e-20
Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    4 QEWNKDSFLPALKEKMPGLE-GEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAA 486
            +EW  +  LPA+K K P  E G+ +  QQD A  H  +D P        D GW++ L+ QP  SPDLNI  LGFF +L+S   +   G++D +V  V   Y+ Y      R++ +L     ++LN+ G N ++V H +    QR+G     ++ DR   DAA
Sbjct:  296 REWLVNKVLPAIKAKWPASERGQTIYIQQDNARTHIPVDDPVFCAAAQAD-GWDIRLICQPPNSPDLNILDLGFFAALQSLFHKLFPGSLDEIVLKVFQAYEQYPTERTNRIFLTLQSCMREILNLKGSNHYKVPHMRKLALQRLGILPVRLQCDRIIVDAA 456          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 97.1 bits (240), Expect = 1.980e-20
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 1
Query:   19 DSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAV 489
            +  LPA++ K P    +E+  QQD A PH   +    L E  R+GG+ +N++ QP QSPDLNI  LGFF +++S   +     +D L++ V+  Y  Y+  I+   W  L     ++L V GGN+++  H   K+  R+G    +V+I  E  +  V
Sbjct:  338 NKLLPAIRAKWPENGCKEIWIQQDNARPHIQPNDAEFL-EACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVEISEELVNDTV 493          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI00053F2A94 (uncharacterized protein LOC104896197 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F2A94)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-20
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   22 SFLPALKEKMPGLEGEEVVAQQDGATPHT-GIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAVEW 495
            + LP++  K P    +++  QQD A PH  G D  +K        G+N+ L+ QP QSPDLN+  LGFF ++++ +++     ID L+  V+  YD +D ++++  W  L     ++L V GGN+++  H      +R+G   K+VK D+   D AV +
Sbjct:  317 NVLPSIMSKWPAGMSKDICIQQDNARPHIQGNDEAFKA--AATQNGFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDELITNVQDAYDRFDPSVMKYTWLQLQWIMVEILQVRGGNNYKNPHHGKARLERLGLLPKTVKCDQVIVDEAVHY 473          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 92.8 bits (229), Expect = 7.760e-20
Identity = 52/157 (33.12%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   28 LPALKEKMPGLEGEEVVAQQDGATPHT-GIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAVEW 495
             PA+  K P    +E+  QQD A  H  G D  +K        G+N+ L+ QP QSPDLN+  LGFF ++++ +++     ID L+E V+  YD +D  +++  W  L     ++L V GGN+++  H      +R+G   K+V+ D +  D AV++
Sbjct:  111 FPAIMSKWPAGLSKEIFIQQDNARAHIQGNDEAFKA--AATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFD-QIVDEAVQY 264          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI000B8A8B59 (uncharacterized protein LOC110790786 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8B59)

HSP 1 Score: 94.0 bits (232), Expect = 1.990e-19
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   19 DSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAVEW 495
            D   P ++ K P    + +  QQD A PH  +D P  L E  +D G++++L+ QP QSPDLNI  L FF +++S   +E   +++ L+E V  +Y+ YD  I+   W        ++L V GGN+++  H   K  QR+G     V++  E     V +
Sbjct:  283 DEVKPTIRAKWPRGACKTIWIQQDNARPHIEVDDPQFLEEAKKD-GFDMHLICQPPQSPDLNILDLSFFRAIQSIQHQEFPVSVEELIESVIKSYNNYDPNIINMTWLHSMYVMEEILKVKGGNNYKSPHKGKKRLQRLGVLPTYVEVPNELVQDTVHF 440          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-19
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   19 DSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAVEW 495
            +  LPA+K K P    +++  QQD A PH   +    L    +D G+N+ LV QP QSPD+NI  LGFF +++S  ++    ++  L+E V++ Y A D   +   W  L     ++L V GGN+++  H   K+ +R+G     +++  +  +    +
Sbjct:  125 EDLLPAIKSKWPSNACKDIWIQQDNARPHISPNDREFLEAATQD-GFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEIEVSEKLLEETTNY 282          
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 93.6 bits (231), Expect = 3.380e-19
Identity = 48/159 (30.19%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   19 DSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRDGGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKSTYDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSKSVKIDREAFDAAVEW 495
            ++ +PA+    P    +E+  QQD A PH     P +        G+N+ L+ QP QSPDLN+  LGFF ++++  ++     +D L+  V+  YD +D  +L+  W  L     ++L   GGN+F+  H   ++ +R+G   ++V +D+   D AV +
Sbjct:  348 NTIIPAIMRNWPEGVSKEIYIQQDNARPHIHASDP-QFIAAATQNGFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAVTY 505          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15402.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE9.720e-2658.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B778AD22.550e-2233.77uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
A0A6A5AA16_9STRA1.600e-2033.33Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
UPI001F5D24F11.610e-2035.19uncharacterized protein LOC124671868 n=1 Tax=Loliu... [more]
J3S7K7_BETVV1.980e-2033.76Mariner transposase n=2 Tax=Beta vulgaris subsp. v... [more]
UPI00053F2A943.490e-2032.70uncharacterized protein LOC104896197 n=3 Tax=Beta ... [more]
UPI00053F72367.760e-2033.12uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
UPI000B8A8B591.990e-1932.70uncharacterized protein LOC110790786 n=1 Tax=Spina... [more]
UPI000B8AF4992.600e-1930.19uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]
UPI00053F85273.380e-1930.19uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15402contigH-paniculata_contig15402:1922..2416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score96.3
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog161934.XP_010695275.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37YIB@33090,3GP0P@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.961-CDS-H-paniculata_contig15402:1921..24161622929233.961-CDS-H-paniculata_contig15402:1921..2416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15402 1922..2416 +
1691480781.1703908-CDS-H-paniculata_contig15402:1921..24161691480781.1703908-CDS-H-paniculata_contig15402:1921..2416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15402 1922..2416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15402.3171.1prot_H-paniculata_contig15402.3171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15402 1922..2416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15402.3171.1

>prot_H-paniculata_contig15402.3171.1 ID=prot_H-paniculata_contig15402.3171.1|Name=mRNA_H-paniculata_contig15402.3171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
YQEWNKDSFLPALKEKMPGLEGEEVVAQQDGATPHTGIDTPWKLNELGRD
GGWNVNLVAQPVQSPDLNINGLGFFDSLKSRVWRERYGAIDGLVEGVKST
YDAYDEAILERVWQSLFKRYSQVLNVLGGNDFEVQHTKTKERQRVGSRSK
SVKIDREAFDAAVEW
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mRNA from alignment at H-paniculata_contig15402:1922..2416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15402.3171.1 ID=mRNA_H-paniculata_contig15402.3171.1|Name=mRNA_H-paniculata_contig15402.3171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at H-paniculata_contig15402:1922..2416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCAGGAGTGGAATAAGGACTCTTTTCTTCCGGCATTGAAGGAAAAGAT GCCGGGGTTGGAGGGTGAGGAAGTGGTCGCGCAGCAGGACGGAGCGACTC CCCACACGGGGATAGACACGCCGTGGAAGCTCAACGAACTCGGAAGGGAC GGGGGGTGGAACGTCAATCTCGTCGCTCAGCCTGTGCAGTCACCAGATCT CAACATCAACGGTTTGGGGTTCTTTGATTCCCTAAAAAGTAGGGTTTGGA GGGAGCGTTACGGTGCAATAGACGGCCTTGTTGAGGGGGTAAAGAGCACG TACGACGCGTACGACGAGGCAATCTTAGAGAGGGTATGGCAGAGCCTTTT TAAGCGGTATAGTCAGGTCTTGAATGTGCTAGGGGGTAACGATTTCGAGG TACAGCACACCAAAACCAAGGAAAGGCAGCGTGTGGGAAGTCGGTCAAAA TCGGTCAAGATCGACCGAGAGGCTTTCGACGCGGCAGTAGAATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15402:1922..2416+

>mRNA_H-paniculata_contig15402.3171.1 ID=mRNA_H-paniculata_contig15402.3171.1|Name=mRNA_H-paniculata_contig15402.3171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig15402:1922..2416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCAGGAGTGGAATAAGGACTCTTTTCTTCCGGCATTGAAGGAAAAGAT
GCCGGGGTTGGAGGGTGAGGAAGTGGTCGCGCAGCAGGACGGAGCGACTC
CCCACACGGGGATAGACACGCCGTGGAAGCTCAACGAACTCGGAAGGGAC
GGGGGGTGGAACGTCAATCTCGTCGCTCAGCCTGTGCAGTCACCAGATCT
CAACATCAACGGTTTGGGGTTCTTTGATTCCCTAAAAAGTAGGGTTTGGA
GGGAGCGTTACGGTGCAATAGACGGCCTTGTTGAGGGGGTAAAGAGCACG
TACGACGCGTACGACGAGGCAATCTTAGAGAGGGTATGGCAGAGCCTTTT
TAAGCGGTATAGTCAGGTCTTGAATGTGCTAGGGGGTAACGATTTCGAGG
TACAGCACACCAAAACCAAGGAAAGGCAGCGTGTGGGAAGTCGGTCAAAA
TCGGTCAAGATCGACCGAGAGGCTTTCGACGCGGCAGTAGAATGGTACCA
GGAGTGGAATAAGGACTCTTTTCTTCCGGCATTGAAGGAAAAGATGCCGG
GGTTGGAGGGTGAGGAAGTGGTCGCGCAGCAGGACGGAGCGACTCCCCAC
ACGGGGATAGACACGCCGTGGAAGCTCAACGAACTCGGAAGGGACGGGGG
GTGGAACGTCAATCTCGTCGCTCAGCCTGTGCAGTCACCAGATCTCAACA
TCAACGGTTTGGGGTTCTTTGATTCCCTAAAAAGTAGGGTTTGGAGGGAG
CGTTACGGTGCAATAGACGGCCTTGTTGAGGGGGTAAAGAGCACGTACGA
CGCGTACGACGAGGCAATCTTAGAGAGGGTATGGCAGAGCCTTTTTAAGC
GGTATAGTCAGGTCTTGAATGTGCTAGGGGGTAACGATTTCGAGGTACAG
CACACCAAAACCAAGGAAAGGCAGCGTGTGGGAAGTCGGTCAAAATCGGT
CAAGATCGACCGAGAGGCTTTCGACGCGGCAGTAGAATGG
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