mRNA_H-paniculata_contig1540.3169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1540.3169.1
Unique NamemRNA_H-paniculata_contig1540.3169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: D8LJA8_ECTSI (Ribosomal protein L19 n=2 Tax=Eukaryota TaxID=2759 RepID=D8LJA8_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 1.720e-105
Identity = 172/189 (91.01%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKSXXXXXXXXXRKKQAAVIREQEASA 567
            VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARK K+         RKK AA  R  E SA
Sbjct:    2 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKLKAKQKNERKEDRKKAAAEARAAEVSA 190
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A835ZKQ0_9STRA (Ribosomal protein L19 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKQ0_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.180e-85
Identity = 142/187 (75.94%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKSXXXXXXXXXRKKQAAVIREQEA 561
            VSLKLQKRLAASVLKCGK KIWLDPNEVNEISLANSRQNIRKL KDGL+I+ P V+HSRARV  R+EAK+KGRHTGPGKR GTANARLPFKL+W RRMR+LRRMLRKYR+AKK+DKHLYH+LY+ CKGNQFKNKRVLMEAIHK K ET R +AL EQAEARKAK+         + ++AA   + EA
Sbjct:    2 VSLKLQKRLAASVLKCGKRKIWLDPNEVNEISLANSRQNIRKLKKDGLIIKKPTVIHSRARVLARNEAKRKGRHTGPGKRHGTANARLPFKLLWMRRMRVLRRMLRKYRDAKKVDKHLYHKLYMLCKGNQFKNKRVLMEAIHKMKAETLRERALVEQAEARKAKASAKKDRKAKKAEEAAAAAQPEA 188
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: K3X7E5_GLOUD (Ribosomal protein L19 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7E5_GLOUD)

HSP 1 Score: 257 bits (656), Expect = 5.250e-80
Identity = 135/192 (70.31%), Postives = 156/192 (81.25%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKSXXXXXXXXXRKKQAAVIREQEASA*PS 576
            VSLKLQKRLAASVLKCGK K+WLDPNE  E++LANSRQNIRKLVKDG +I+ P+V+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYREAKKIDKH+YHELY+  KGNQFKNKRVLME IHK K E AR K LKEQ+EARK K+         +   AA   + +A+A P+
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESTELALANSRQNIRKLVKDGFIIKKPEVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERAREKTLKEQSEARKEKAKNARDRKAQKAVAAATEEKPKAAAKPA 193
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A7S2V357_9STRA (Ribosomal protein L19 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V357_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.120e-79
Identity = 134/165 (81.21%), Postives = 148/165 (89.70%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKS 495
            VSL+LQKRLAASVLKCGK KIWLDPNE+NEIS+ANSRQNIRKLVKDGLVIR PQVVHSRARV  R+EAK KGRHTG GKR GTANARLPFKLIW RR R+LRR+LRKYR+AKKIDKHLYH+LY+  KGNQFKNK+VLMEAIH+ K E AR KAL +QAEARK ++
Sbjct:    2 VSLRLQKRLAASVLKCGKRKIWLDPNEINEISMANSRQNIRKLVKDGLVIRKPQVVHSRARVVERNEAKAKGRHTGYGKRHGTANARLPFKLIWMRRARVLRRLLRKYRDAKKIDKHLYHDLYMRSKGNQFKNKKVLMEAIHRMKAEKAREKALADQAEARKTRA 166
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A484E6K8_BRELC (Ribosomal protein L19 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6K8_BRELC)

HSP 1 Score: 254 bits (649), Expect = 4.190e-79
Identity = 131/165 (79.39%), Postives = 146/165 (88.48%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKS 495
            VSLKLQKRLAASVLKCGK K+WLDPNE NEI+LANSRQNIRKLVKDG VI+ PQV+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RR+R+LRR+LRKYREAKKIDKH+YH+LY+  KGNQFKNKRVLME IHK K E  R K LKEQ+EARK K+
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKA 166
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: M4C2P1_HYAAE (Ribosomal protein L19 n=26 Tax=Eukaryota TaxID=2759 RepID=M4C2P1_HYAAE)

HSP 1 Score: 253 bits (647), Expect = 8.630e-79
Identity = 136/182 (74.73%), Postives = 151/182 (82.97%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKSXXXXXXXXXRKKQAAVI 546
            VSLKLQKRLAASVLKCGK KIWLDPNE NEI+LANSRQNIRKLVKDG VI+ PQV+HSRAR   R+EAK+KGRHTG GKR GTANARLPFK+IW RR+R+LRR+LRKYREAKKIDKH+YHELY+  KGNQFKNKRVLME IHK K E  R K LKEQ++ARK K+          KK AAV+
Sbjct:    2 VSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRHGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSDARKEKAKSARERKS--KKTAAVL 181
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A067BLM6_SAPPC (Ribosomal protein L19 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLM6_SAPPC)

HSP 1 Score: 253 bits (645), Expect = 1.500e-78
Identity = 130/165 (78.79%), Postives = 146/165 (88.48%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKS 495
            VSLKLQKRLAASVLKCGK K+WLDPNE  EI+LANSRQNIRKLVKDG VIR PQV+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYR+AKKID+H+YH+LY+  KGNQFKNKRVLME IHK K E  R KALK+Q+EARK K+
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKA 166
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A6V1T3Z5_HETAK (Ribosomal protein L19 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T3Z5_HETAK)

HSP 1 Score: 252 bits (644), Expect = 5.430e-78
Identity = 130/165 (78.79%), Postives = 147/165 (89.09%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKS 495
            VSLKLQKRLAASVLKCGK KIWLDPNE+NEIS ANSRQNIRKL KDGL+++ PQVVHSRARV   +EAK KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+L+KYR+AKK+DKHLYHELY+  KGNQFKNKRVLME+IHK K E AR KAL +QAEA+K ++
Sbjct:   21 VSLKLQKRLAASVLKCGKRKIWLDPNEINEISSANSRQNIRKLFKDGLLVKKPQVVHSRARVLAYNEAKAKGRHTGYGKRRGTANARLPFKIIWMRRMRVLRRLLKKYRDAKKLDKHLYHELYMRSKGNQFKNKRVLMESIHKMKAEKARAKALVDQAEAKKTRA 185
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: A0A7S2G695_9STRA (Ribosomal protein L19 n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G695_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.660e-77
Identity = 134/192 (69.79%), Postives = 155/192 (80.73%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKSXXXXXXXXXRK-KQAAVIREQEASA*P 573
            VSLKLQKRLAASVLKCG+ K+WLDPNE NEIS+ANSRQNIRKL+KDG V + PQVVHSR+RV    +AK+KGRHTG GKR+GTA+ARLP K++W RRMR+LRR+LRKYREAKKID+HLYHELY+ CKGNQFKNKRVLMEAIHK K   AR KAL EQA+ARK K+         RK +Q  + RE +A   P
Sbjct:    2 VSLKLQKRLAASVLKCGRKKVWLDPNESNEISMANSRQNIRKLIKDGFVFKKPQVVHSRSRVMRHLDAKRKGRHTGYGKRKGTADARLPLKVLWMRRMRVLRRLLRKYREAKKIDRHLYHELYMRCKGNQFKNKRVLMEAIHKMKAGKAREKALMEQADARKNKAKAKTERKMKRKTEQDEMARELDAQEEP 193
[Close]
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Match: F0WQF6_9STRA (Ribosomal protein L19 n=2 Tax=Albugo TaxID=65356 RepID=F0WQF6_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.790e-76
Identity = 128/165 (77.58%), Postives = 145/165 (87.88%), Query Frame = 1 
Query:    1 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKAKS 495
            VSL+LQKRLAASVLKCGK KIWLDPNE NEI+LANSR+NIRKLVKDG VI+ PQV+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYREAKKID+ LYH+LY+  KGNQFKNKRVLME IHK K E  R K L+EQ+EARK ++
Sbjct:    2 VSLRLQKRLAASVLKCGKRKIWLDPNESNEIALANSRENIRKLVKDGFVIKKPQVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDRFLYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLREQSEARKERA 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1540.3169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA8_ECTSI1.720e-10591.01Ribosomal protein L19 n=2 Tax=Eukaryota TaxID=2759... [more]
A0A835ZKQ0_9STRA1.180e-8575.94Ribosomal protein L19 n=2 Tax=Tribonema minus TaxI... [more]
K3X7E5_GLOUD5.250e-8070.31Ribosomal protein L19 n=2 Tax=Pythiaceae TaxID=478... [more]
A0A7S2V357_9STRA1.120e-7981.21Ribosomal protein L19 n=1 Tax=Fibrocapsa japonica ... [more]
A0A484E6K8_BRELC4.190e-7979.39Ribosomal protein L19 n=1 Tax=Bremia lactucae TaxI... [more]
M4C2P1_HYAAE8.630e-7974.73Ribosomal protein L19 n=26 Tax=Eukaryota TaxID=275... [more]
A0A067BLM6_SAPPC1.500e-7878.79Ribosomal protein L19 n=4 Tax=Saprolegniaceae TaxI... [more]
A0A6V1T3Z5_HETAK5.430e-7878.79Ribosomal protein L19 n=2 Tax=Heterosigma akashiwo... [more]
A0A7S2G695_9STRA3.660e-7769.79Ribosomal protein L19 n=2 Tax=Dictyocha speculum T... [more]
F0WQF6_9STRA1.790e-7677.58Ribosomal protein L19 n=2 Tax=Albugo TaxID=65356 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1540contigH-paniculata_contig1540:21121..25043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D8LJA8
Preferred nameRPL19
KEGG rclassRC00002,RC00017
KEGG koko:K00844,ko:K02885,ko:K14780
KEGG ReactionR00299,R00760,R00867,R01326,R01600,R01786,R01961,R03920
KEGG Pathwayko00010,ko00051,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,ko03010,ko04066,ko04910,ko04930,ko04973,ko05230,map00010,map00051,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200,map03010,map04066,map04910,map04930,map04973,map05230
KEGG ModuleM00001,M00177,M00179,M00549
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001889,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030097,GO:0030684,GO:0030687,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2147@1,KOG1696@2759
Ec32 ortholog descriptionRibosomal protein L19/L19e domain
Ec32 orthologEc-02_005390.1
EC2.7.1.1,3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko04131
Exons5
Model size1539
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.6998034-UTR-H-paniculata_contig1540:21120..212461622929233.6998034-UTR-H-paniculata_contig1540:21120..21246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 21121..21246 +
1691480781.04639-UTR-H-paniculata_contig1540:21120..212461691480781.04639-UTR-H-paniculata_contig1540:21120..21246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 21121..21246 +
1622929233.7172024-UTR-H-paniculata_contig1540:22092..221751622929233.7172024-UTR-H-paniculata_contig1540:22092..22175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 22093..22175 +
1691480781.0620584-UTR-H-paniculata_contig1540:22092..221751691480781.0620584-UTR-H-paniculata_contig1540:22092..22175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 22093..22175 +
1622929233.7302291-UTR-H-paniculata_contig1540:22802..228841622929233.7302291-UTR-H-paniculata_contig1540:22802..22884Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 22803..22884 +
1691480781.0699172-UTR-H-paniculata_contig1540:22802..228841691480781.0699172-UTR-H-paniculata_contig1540:22802..22884Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 22803..22884 +
1622929233.7861612-UTR-H-paniculata_contig1540:24074..250431622929233.7861612-UTR-H-paniculata_contig1540:24074..25043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 24075..25043 +
1691480781.10847-UTR-H-paniculata_contig1540:24074..250431691480781.10847-UTR-H-paniculata_contig1540:24074..25043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1540 24075..25043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.7422814-CDS-H-paniculata_contig1540:22884..229581622929233.7422814-CDS-H-paniculata_contig1540:22884..22958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 22885..22958 +
1691480781.0781095-CDS-H-paniculata_contig1540:22884..229581691480781.0781095-CDS-H-paniculata_contig1540:22884..22958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 22885..22958 +
1622929233.7576802-CDS-H-paniculata_contig1540:23473..235791622929233.7576802-CDS-H-paniculata_contig1540:23473..23579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 23474..23579 +
1691480781.0877302-CDS-H-paniculata_contig1540:23473..235791691480781.0877302-CDS-H-paniculata_contig1540:23473..23579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 23474..23579 +
1622929233.773049-CDS-H-paniculata_contig1540:23975..240741622929233.773049-CDS-H-paniculata_contig1540:23975..24074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 23976..24074 +
1691480781.0979092-CDS-H-paniculata_contig1540:23975..240741691480781.0979092-CDS-H-paniculata_contig1540:23975..24074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1540 23976..24074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1540.3169.1prot_H-paniculata_contig1540.3169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1540 22885..24074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1540.3169.1

>prot_H-paniculata_contig1540.3169.1 ID=prot_H-paniculata_contig1540.3169.1|Name=mRNA_H-paniculata_contig1540.3169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGE
TARIKALKEQAEARKAKSKSKRERKEERKKQAAVIREQEASA*
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mRNA from alignment at H-paniculata_contig1540:21121..25043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1540.3169.1 ID=mRNA_H-paniculata_contig1540.3169.1|Name=mRNA_H-paniculata_contig1540.3169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3923bp|location=Sequence derived from alignment at H-paniculata_contig1540:21121..25043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCTCTTAAACTCCAGAAGCGGCTCGCCGCCTCCGTACTCAAGTGCGG
AAAGGGGAAGATCTGGCTCGACCCTAATGAGGTCAACGAGATCTCTCTCG
CCAATTCTCGTCAAAACATCCGCAAGGTAAGAAATTATAACCACCAGCTT
CGCCTCCAGGAGCCTTCCCTTCTCTATTGGCGGTAATTGTCTGTAGTGCT
GACGACAATTTTCTCAATTTATGAAAGAAGATACATGCTGTATCAGTCGA
AGGTGGAGCTCCTCGCAAAGGAGCACAATGTTTCGGATGATAGTTGGCTG
AGGGAATTGAAATTGGTTTATCCACACCCTGGAGCAATTTGTTATGGTAC
CTGTGTGTGACATGAATCTAAAGTAATCCGTTTAATCTAACGAAATGATA
TACCATGGATCACGAAAGCCCAGACATGGCGTGTCGAGCACGATTTGTCA
CAACCACTGTGGACTTTCGTAATAGGGAAACATGGGATGGACAAACTAGT
TGAGCTATTTTGTTGTAGATATACTCACACGAGTCAGAGAAAAACTCGTT
CAAGGCTTGAGCTTTTTGTGGAGTTCCCCTTTGGTGTCATGGCTGTCGCT
ATGTATGTCTTGTCCCGTCATGACCACTCCTAGTATGCTTTTTTGCAGCA
TCTGTCATTGGCGAGGAAAAATTTCAGCTAGTTCATGTCGCGTATAAAGA
AAGGCGTAGCTAGTTACAAGGTGAACGTCATCTGTCATTTCTGCCTTGGC
TGATGATGTTTGCCGGAAATATTACCGTGGAATTGTAGCTACGTAACAGG
CCCTTGAAAGTATTCGAGTGTTTTTTAGTATCACACATCGTGGCACCCTT
ATTAGTAGTTGTTCAGCATCGTTCTGGGCACAGTTCCCAGTAACGTTGCT
TGACGATATCCTTGTGCTAAACGTAAAACCCACGCCACTATTCGACATTT
GTTCTGTTTCCTTGGTCTACAGTTGGTCAAGGATGGATTGGTGATCCGAT
TGCCGCAGGTGGTGCACTCTCGCGCGCGTGTCAACTTGCGCCACGAGGCG
AAGAAGTGAGTTTTGAAAGGACAGAAACAGATGTTGTGTCGACCTGTTGA
AGCATGTATAAGGTCACTGATGTCAATACATTCAATCTGCTGGAGCTGTT
GTATTGACATGCGTGGTGACTTTGTATCTTGATGTCGATTCGTGTTGAAG
ATTTGTCTTCTGAAATCAAGTTTTCAACTACCCGATGTTCCCAATCGTGG
CATACACAAACAGTACGTTATCTGTATTTTTTATACCATTAAATATCGTG
TTGCCTCGGTTGTATCACCCTGATTGAGGTTCTCATCTCGGAATGAAATT
GACTAGAGCATCGGGGAAATGAGGTTGAAGTCAATTTCGCGTGTGACCTT
GGGAATGGATGTAAAGTGGAAATGATGAAGGGGGCGACTGGTCAGGAATA
ATTGTGGCTAACCCGTACCAGGGAGTGATGAAAGACCCAGCTCAGCAGTC
ATGTGCGTGGCCGGTTCGGATATCTCCACCAGTTATAGTCGTCCATTGTT
ACTCGAGTGTTGCACGTCTAGTATCGTCTTTTTGAGATGCCTTGTAACAT
ATATATATAATACTAATCTTGGATGGGTCTTTTTTGTGCGTGGACCGCTC
TATTTGCAATGTGGACCCCGCTCTGTGAGCAGGAAGGGACGGCACACTGG
TCCTGGTAAGCGGAGGGGTACAGCGAACGCTCGCCTCCCCTTCAAGCTCA
TCTGGCAACGCCGCATGCGCATCCTTCGCCGTATGCTTCGCAAGTACCGG
GAGGCTAAGAAAATCGACAAGCACCTGTACCATGAGCTGTGAGTAATATA
TAATCGAATCCTGTATTCGAAGTACAAATAAAATACGTGAGCCGTTTTCT
CAAAAGCCAATGTTTGAAATATTTCTCGTAAGTAGCCGTCTTGAGTTCTG
TGTGGGCTGTTCTATACGAGGTGCTTCGACTGATGGCGCGCGTGCAGGAA
TTGGCGGACGTAGTTTTGTTCATAGTGAAGAAAAATGCGTTTAGTCTCGA
AATATGCATGTGTTCGTGATGTCGAATCGTGACTCACACAGTTAGTGTGA
GAGCCTCATGCGAAACAAAAAAGACACCCTGAAGTATGTTTCAGCTGTAA
TCGTAATGACAAACACGGAAAGCCACCCCTGTTTTAATGTTGACGCCACA
AATGTGAACCACATCTGATGAAGCCGAGTACAGACCAGATGGTACACGAC
ACGGGGAGGGTTAATGCCCAGGTATACTGCGTGCTGGGTCCGTGATCTAT
CCTTTTTTTTCACTCATCACTTGAGCAGTTTTACATTCCTTTTGTCCCGA
TAGGTACCTGGGCTGCAAGGGCAACCAGTTCAAGAACAAGCGTGTCCTGA
TGGAGGCCATCCACAAAAAGAAGGGGGAGACTGCGCGTATCAAGGCGCTC
AAGGAGCAGGTGAGCTAAACGCAGTCACGAGACTAGGACAGTCTTGGCAC
TGTATAATCCGTCATTTTCGATGTAACATGAATGAGTGTCTGATATGGTC
CCACAAACTCATGAGGCACTGGGCTTTGCCTGAAATTTCAGGCATCAGTG
ACCATAACTGCTTTTACAGCGGGACGTTACCGAATTTGATGGATACATGT
TCGCGGTCTTCCATGCTTCGTGCCACGTTAAAGAATGGGTTCTCTGACAT
ATCAAGTGTATCAGGTTGTATCCAATTGGAATCAATCCATGAATTAAACT
GTTTGAATATGTGTTGCTGGAGCAAAGGGTGTTTTTCAAGGAAAGGGTTG
TCTTGGAGCCATGACTAATGTAAAATCCTCAATTTTTCCGTAATCCCTTC
TCCAGGCGGAGGCGCGCAAGGCTAAGTCGAAGAGCAAGCGGGAGCGCAAG
GAAGAGCGCAAGAAGCAGGCCGCCGTCATTCGCGAGCAGGAAGCTTCGGC
GTAACCATCTTGAACTTCCAAACGCAATTATGTCGCACACGCAGCACTAG
GTCTCGACAAGCGCTTTGCGAACACGAGGGGTCCACATGCATGCACACAC
ATGTCTTGGATGTGTCACGCAATATCTGGTTTCCATGTCAGATGGCGTCC
TTTGAAAAGTCTGATTTTTGTCGAGAAGCATGGGTCGCAGTTTGTAACGT
GGAGGTCGTTTTATTGTTGTATATGATCCAGGTTGATGTTGGGGGAGGGC
ATGTGGGTGTTATAGGCTGATGAGCATAGCCGTATTCTTCGCCCCTCGTT
TTCTAATGTCGTGCTTGTGTTTTGATGAGACTACCGGGCTGCAGCAACAG
AAGCAACTAAGGTCCCACCCTGATGAAAACAAATAAAAAATTCAATACAA
GTCTCGGACTCGATAATAATCGTAGGTTGTGAAGGATGGTGTCAAGATAA
ATCTCATCCTCGCGTGAGTGTGGATCCACGTTCAACGTGATGCAGGCAAT
TCGGCACTCGCTGAACCTGGGTGGCTCTGGTGTTACAGCCTCATGATTTT
TTTTCTCGTCCTTGAGCGGTACCATCGTACTTGAAATGTTTCACCTTTAC
GAGTGGTTCAAAGGGACGCGATGAACAAGCTACAGTTTGAAGAGCTGTAT
GTGTCACAATCCACCAGCCATTCGAGCGTTCAAGTTCTTTTTCATGGAGA
CTCCAACTCACCACGGACGATTGAGGCTAATGGGTTAGCGAAATGAAGTG
AAGGACACAAAGCTAGGAAACTCTGTTCTGTTGAAAGAAATGTAGATATG
TTTGGGCGAAGGACTGGATGTGGAAGCAGCGGAAAAGGTTTTTACCTCAG
CCTTCCGGGGGTTGGAAAAAAAGACACAAAGCCTCAAAAGTTATGTTCAA
CTTAATCGACAATTCTTTTATCGTCATATGTGTAATTCCGTGGGGAGGAA
ATAGGAAAAAAAACAAATCGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1540:21121..25043+

>mRNA_H-paniculata_contig1540.3169.1 ID=mRNA_H-paniculata_contig1540.3169.1|Name=mRNA_H-paniculata_contig1540.3169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig1540:21121..25043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCATCCTTCGCCGTATGCTTCGCAAGTACCGGGAGGCTAAGAAAAT
CGACAAGCACCTGTACCATGAGCTATGCGCATCCTTCGCCGTATGCTTCG
CAAGTACCGGGAGGCTAAGAAAATCGACAAGCACCTGTACCATGAGCTGT
ACCTGGGCTGCAAGGGCAACCAGTTCAAGAACAAGCGTGTCCTGATGGAG
GCCATCCACAAAAAGAAGGGGGAGACTGCGCGTATCAAGGCGCTCAAGGA
GCAGGTACCTGGGCTGCAAGGGCAACCAGTTCAAGAACAAGCGTGTCCTG
ATGGAGGCCATCCACAAAAAGAAGGGGGAGACTGCGCGTATCAAGGCGCT
CAAGGAGCAGGCGGAGGCGCGCAAGGCTAAGTCGAAGAGCAAGCGGGAGC
GCAAGGAAGAGCGCAAGAAGCAGGCCGCCGTCATTCGCGAGCAGGAAGCT
TCGGCGTAAGCGGAGGCGCGCAAGGCTAAGTCGAAGAGCAAGCGGGAGCG
CAAGGAAGAGCGCAAGAAGCAGGCCGCCGTCATTCGCGAGCAGGAAGCTT
CGGCGTAA
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