mRNA_H-paniculata_contig15379.3156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15379.3156.1
Unique NamemRNA_H-paniculata_contig15379.3156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15379.3156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15379contigH-paniculata_contig15379:4540..5274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.242534-UTR-H-paniculata_contig15379:4539..47701622929231.242534-UTR-H-paniculata_contig15379:4539..4770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15379 4540..4770 +
1691480779.9580772-UTR-H-paniculata_contig15379:4539..47701691480779.9580772-UTR-H-paniculata_contig15379:4539..4770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15379 4540..4770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.2618732-CDS-H-paniculata_contig15379:4770..52741622929231.2618732-CDS-H-paniculata_contig15379:4770..5274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15379 4771..5274 +
1691480779.968937-CDS-H-paniculata_contig15379:4770..52741691480779.968937-CDS-H-paniculata_contig15379:4770..5274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15379 4771..5274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15379.3156.1prot_H-paniculata_contig15379.3156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15379 4771..5274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15379.3156.1

>prot_H-paniculata_contig15379.3156.1 ID=prot_H-paniculata_contig15379.3156.1|Name=mRNA_H-paniculata_contig15379.3156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MLTIHLNDDRPSRVPAAVHRGKSELNTSVGRLRADSLRFRARARPAGIGL
LGRRELFSRGGIARGEISLGCTDAAAGEAAGSTKLFPLLCMLARLLLTAV
LLLPLLLLLLLPVLKEADDSAEEEEEEEEDLRAAVLKRCWVVALLVAAMV
LDDMRCFVVDGWSIILL*
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mRNA from alignment at H-paniculata_contig15379:4540..5274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15379.3156.1 ID=mRNA_H-paniculata_contig15379.3156.1|Name=mRNA_H-paniculata_contig15379.3156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig15379:4540..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGAGCAGACCGCATCAGGAAGTACCCGCGCCCCTTTAACATGCAGC
ACCAACCACGGAGAGAGAACAGTACAACAGTACAGAGTACCGTACATTTA
CAACACATTTACCGGCATGTAAGAATGTATCTTATAGGAAATCAAGAGTC
AGTCAAGTTTGAAGTTTCCCCAACTTTTCAAAATCTGATTCTAGGAGTCA
CTTGCTTTTGGGATGACCCCGGATACTGTCTATGCTGACTATCCACCTCA
ATGATGATCGACCCTCTCGCGTACCTGCTGCAGTCCACCGAGGTAAGTCT
GAGTTGAATACGTCCGTCGGCCGCCTAAGAGCAGACTCTCTGCGCTTCCG
TGCTCGGGCGCGACCCGCCGGCATAGGTCTGCTGGGGCGGCGCGAGCTCT
TCAGTAGGGGCGGGATCGCGCGCGGTGAGATATCGTTGGGATGCACAGAT
GCAGCAGCAGGTGAGGCGGCTGGAAGCACCAAATTGTTTCCGTTGCTCTG
CATGCTGGCCCGCCTGCTACTGACGGCAGTACTGTTGCTTCCATTATTGC
TGTTGCTGCTGCTTCCTGTTTTGAAAGAGGCTGATGATAGTGCCGAAGAG
GAAGAGGAGGAGGAGGAGGACCTTCGAGCGGCGGTGCTGAAACGCTGCTG
GGTCGTCGCACTGTTGGTCGCAGCCATGGTGTTAGATGATATGAGGTGTT
TTGTTGTGGACGGGTGGTCTATTATTTTGCTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15379:4540..5274+

>mRNA_H-paniculata_contig15379.3156.1 ID=mRNA_H-paniculata_contig15379.3156.1|Name=mRNA_H-paniculata_contig15379.3156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig15379:4540..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGACTATCCACCTCAATGATGATCGACCCTCTCGCGTACCTGCTGC
AGTCCACCGAGGTAAGTCTGAGTTGAATACGTCCGTCGGCCGCCTAAGAG
CAGACTCTCTGCGCTTCCGTGCTCGGGCGCGACCCGCCGGCATAGGTCTG
CTGGGGCGGCGCGAGCTCTTCAGTAGGGGCGGGATCGCGCGCGGTGAGAT
ATCGTTGGGATGCACAGATGCAGCAGCAGGTGAGGCGGCTGGAAGCACCA
AATTGTTTCCGTTGCTCTGCATGCTGGCCCGCCTGCTACTGACGGCAGTA
CTGTTGCTTCCATTATTGCTGTTGCTGCTGCTTCCTGTTTTGAAAGAGGC
TGATGATAGTGCCGAAGAGGAAGAGGAGGAGGAGGAGGACCTTCGAGCGG
CGGTGCTGAAACGCTGCTGGGTCGTCGCACTGTTGGTCGCAGCCATGGTG
TTAGATGATATGAGGTGTTTTGTTGTGGACGGGTGGTCTATTATTTTGCT
ATGAATGCTGACTATCCACCTCAATGATGATCGACCCTCTCGCGTACCTG
CTGCAGTCCACCGAGGTAAGTCTGAGTTGAATACGTCCGTCGGCCGCCTA
AGAGCAGACTCTCTGCGCTTCCGTGCTCGGGCGCGACCCGCCGGCATAGG
TCTGCTGGGGCGGCGCGAGCTCTTCAGTAGGGGCGGGATCGCGCGCGGTG
AGATATCGTTGGGATGCACAGATGCAGCAGCAGGTGAGGCGGCTGGAAGC
ACCAAATTGTTTCCGTTGCTCTGCATGCTGGCCCGCCTGCTACTGACGGC
AGTACTGTTGCTTCCATTATTGCTGTTGCTGCTGCTTCCTGTTTTGAAAG
AGGCTGATGATAGTGCCGAAGAGGAAGAGGAGGAGGAGGAGGACCTTCGA
GCGGCGGTGCTGAAACGCTGCTGGGTCGTCGCACTGTTGGTCGCAGCCAT
GGTGTTAGATGATATGAGGTGTTTTGTTGTGGACGGGTGGTCTATTATTT
TGCTATGA
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