mRNA_H-paniculata_contig15376.3154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15376.3154.1
Unique NamemRNA_H-paniculata_contig15376.3154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A6H5KJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT5_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 3.200e-115
Identity = 165/226 (73.01%), Postives = 194/226 (85.84%), Query Frame = 1
Query:    1 QVCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTFQL 678
            QV D+LDFVPMD+FQK+FFL RQ EWL YK+ FP IKQGDL DPDYFDFISFAQ+AS+AEAMRNGR FFEEKVGAEGE+RTVQR+ D+ DNA LP EHARRVGD++LAY  E FGSTKLAPV  QGQ+ A L EGC++I+NLLRLNFY LDY+V+ +LDR++L  + R  APATIWGQ+VLA+R+DRP +DFEAKVI AYLRACG  GATYST+F++LD VHTF+L
Sbjct:   85 QVVDELDFVPMDDFQKQFFLFRQREWLGYKENFPRIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEKVGAEGEKRTVQRSADFKDNARLPEEHARRVGDRILAYCTEAFGSTKLAPVVTQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVL--TVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRACGLEGATYSTAFSSLDAVHTFRL 308          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: D8LI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI96_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 8.170e-89
Identity = 140/226 (61.95%), Postives = 162/226 (71.68%), Query Frame = 1
Query:    1 QVCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTFQL 678
            QV D+LDFVPMD+FQK+FFLLRQ EWL YK  FP IKQGDL DPDYFDFISFAQ+AS+AEAMRNGR FFEEK                                   AY  E FGSTKLAPV  QGQ+ A L EGC++I+NLLRLNFY LDY+V+ +LDR++L  + R  APATIWGQ+VLA+R+DRP +DFEAKVI AYLRACG  GATYST+F+ LD VHTF+L
Sbjct:   45 QVVDELDFVPMDDFQKQFFLLRQGEWLGYKQNFPRIKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEK-----------------------------------AYCTEAFGSTKLAPVVAQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVL--TVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRACGLEGATYSTAFSNLDAVHTFRL 233          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A836CM91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM91_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.870e-75
Identity = 123/229 (53.71%), Postives = 165/229 (72.05%), Query Frame = 1
Query:    4 VCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLA-PVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDR---RLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTFQL 678
            V D+LD+ PMD FQ++FFL RQ EW D++ Q PGI QGDLTDP+YFDFISFAQ+A+IA  MR+ +  F EKVGA+GE +TVQR P+ AD+ALLP EHARRVGD++  YI ETF S   A P        + +A G E++++  RLNF+ +D  V+ +  +    +L  +AR  APAT+W Q+VLA+R+D P +DFEAK + AYLRAC +V  TY+T+++ LDV HTF+L
Sbjct:  108 VADELDYTPMDGFQREFFLFRQGEWQDFQKQHPGILQGDLTDPNYFDFISFAQYATIAAGMRSAQLLFTEKVGADGETQTVQRAPELADDALLPGEHARRVGDRIFTYIMETFASVPEALPQVSVKPPLSIIARGVERVMDKFRLNFFCVDAKVAASTGKDGSAVLTVTAR--APATLWSQQVLAQRRDAPTNDFEAKAVAAYLRAC-QVPHTYTTTYSGLDVTHTFRL 333          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A7S2V3L1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L1_9STRA)

HSP 1 Score: 190 bits (482), Expect = 5.200e-56
Identity = 106/226 (46.90%), Postives = 143/226 (63.27%), Query Frame = 1
Query:    4 VCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGR-QFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTFQL 678
            V D++DF+PMDEFQK+FFL R DE+  Y ++  G+ QGDL DP YFDFISFAQ+A+++  M+N   Q F EK GAEGE   +QR  +YADN +LP  HA+ VGD+ML Y+  T    KLAP   +  S   L  G  Q + L++LN +MLD+ V     + +     R   PA++W Q+VL  ++    +DFEAK+I AYLR CG V   Y TSF   +VVH+F +
Sbjct:  100 VADEMDFIPMDEFQKQFFLYRADEYELYLEENRGVTQGDLADPVYFDFISFAQYATLSRFMKNPPGQVFVEKRGAEGEDFVIQRPQEYADNKVLPIVHAQLVGDRMLEYLS-TEKYEKLAPKVPEKPSVETLLSGIVQAVGLMKLNSFMLDFQVKPVSPKEI---EVRLQGPASLWSQQVLRGQQTVLTNDFEAKLICAYLRKCG-VKPVYRTSFTKTEVVHSFSI 320          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: R1CRK3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CRK3_EMIHU)

HSP 1 Score: 180 bits (456), Expect = 1.050e-51
Identity = 107/223 (47.98%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    7 CDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYA-DNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTF 672
             D+LDF+PMDEFQK+ FLLRQD+W  Y+   P +KQGD++DP+YFDF+S+ Q+A+IA  MR+GR  FEE + A G    V R+P    DNA LPA  + RVGDK+L  I E +    LAP      S A L EG + +  +   N Y+L  S       R    SA  IAPAT+W Q+VL+ R D  V+DFEAK I AYLR C  V A+Y+T +   +VVH F
Sbjct:  141 ADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPPVKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL--SARLEPSERGFQLSA--IAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLRRCA-VDASYTTRYEGSEVVHIF 355          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A7S0ETJ5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETJ5_9EUKA)

HSP 1 Score: 177 bits (448), Expect = 1.430e-51
Identity = 94/224 (41.96%), Postives = 140/224 (62.50%), Query Frame = 1
Query:    4 VCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTFQ 675
            V D+LD+ PMD+FQ+  FL RQDEW  Y++  PG++QG LT+P YFDFISF Q+A+IA  M+  +  F+E + A G    V R P+ A++ALLP  H+ RVG+ +LA++ + +   K+ P      + A + +G + ILN+  +N YML     + L+          +APAT+W Q +L  R+D P +DFEAK ++AYL+ CG + AT ST+    +V HTF+
Sbjct:   46 VADELDYYPMDKFQQDQFLFRQDEWELYREALPGVQQGFLTEPAYFDFISFVQYATIATTMKEPKMIFDELIDANGTSIVVTRPPELANDALLPMRHSERVGEAVLAWMDDRY--NKIRPKVPSVLTAAAVRDGVQAILNIYEINGYML----LSKLEPTSHGVKITLVAPATLWSQSMLRNRRDLP-NDFEAKTVVAYLKQCG-LPATVSTNIAGNNVEHTFE 261          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: R1DSH8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSH8_EMIHU)

HSP 1 Score: 180 bits (456), Expect = 3.900e-51
Identity = 107/223 (47.98%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    7 CDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYA-DNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNALDVVHTF 672
             D+LDF+PMDEFQK+ FLLRQD+W  Y+   P +KQGD++DP+YFDF+S+ Q+A+IA  MR+GR  FEE + A G    V R+P    DNA LPA  + RVGDK+L  I E +    LAP      S A L EG + +  +   N Y+L  S       R    SA  IAPAT+W Q+VL+ R D  V+DFEAK I AYLR C  V A+Y+T +   +VVH F
Sbjct:  196 ADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPPVKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYNNYLL--SARLEPSERGFQLSA--IAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLRRCA-VDASYTTRYEGSEVVHIF 410          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A6U4J7M3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4J7M3_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.210e-49
Identity = 104/239 (43.51%), Postives = 144/239 (60.25%), Query Frame = 1
Query:    1 QVCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPG-IKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSV-------STNLDRRLLMASARTIAPATIWGQRVLAKRKDR----PVSDFEAKVILAYLRACGEVGATYSTSF-NALDVVHTFQL 678
            +V D+LDFV MDEFQK+F+L RQDEWL YKD+    + QGDL +PDYFD+ISF Q+A I ++MR+GR  F EK+GAEGE+RTV+R     DN LLP EH RRVG  +L+++ E F            +S+A L  G EQ L  + +  Y   ++V       S ++  RL +  + +  P T WGQ+ LA+  +R    PV+DFE KV  A+L+  G       T+F    DV+H+ +L
Sbjct:   59 EVADELDFVAMDEFQKRFYLFRQDEWLSYKDRVQRFMTQGDLANPDYFDYISFCQYAVIGDSMRSGRLEFIEKIGAEGEQRTVRRAEGLRDNNLLPREHERRVGALLLSHLIERFPGRFPLLEGINARSSADLCGGVEQALRCMAICGYGTQWTVLPEASIGSDDIVPRLRLTISGSSLP-TAWGQKRLARDAERFPGLPVNDFEVKVARAWLQRQGVASRLLRTTFLRDADVIHSIEL 296          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A0G4F5D5_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D5_VITBC)

HSP 1 Score: 165 bits (418), Expect = 2.740e-46
Identity = 98/233 (42.06%), Postives = 140/233 (60.09%), Query Frame = 1
Query:    4 VCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPG--IKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYIGETFGSTKLAPVTGQGQSTAR-----LAEGCEQILNLLRLNFYML--DYSVSTNLDRRLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFNA-LDVVHTF 672
            V D+LDFVPM++FQK FFL RQ+EW  Y+++     I QGDL D +YFDFISFAQ+ ++   M +G+Q F EK GA GE + V+R    ADN+LLP+EH+RRVGD++L ++ + F + +        ++ AR     +    +QI NL+ +  Y    +  ++   D          + PAT+WGQ+VL+ R     +D+EAK+ +AY R CG   ATY TSF     VVHTF
Sbjct:   89 VADELDFVPMNDFQKDFFLYRQNEWERYRERLKPMPITQGDLADANYFDFISFAQYLTLYTEMCSGQQLFVEKTGATGEEQLVRRPAFLADNSLLPSEHSRRVGDRLLDFLIDRFNTDESGKTCCIIRAAARPSPSFVVSNVQQIANLMTILGYAEKGEAKLTGERDDGKFSFEMMLVLPATLWGQQVLSIRGAGLPNDYEAKIAMAYTRRCG-YRATYRTSFEGGSSVVHTF 320          
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Match: A0A0M0K8A7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K8A7_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 2.730e-44
Identity = 101/223 (45.29%), Postives = 131/223 (58.74%), Query Frame = 1
Query:    4 VCDDLDFVPMDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAEAMRNGRQFFEEKVGAEGERRTVQRNPDYAD-NALLPAEHARRVGDKMLAYIGETFGST--KLAPVTGQGQSTAR-LAEGCEQILNLLRLNFYMLDYSVSTNLDRRLLMASART----IAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGATYSTSFN 648
            V D+LDF+PMDEFQK+ FL RQ EW  Y+++ P + QGDLTDP YFDFISF Q+ASIA  MR GR  FEE + A G    V R P     N LLP  H+ RVGD++L ++ E +      + P T      A  L EGC+++ ++  LN + L  +V+       L + A      +APAT+WG +VL  R D P +DFE   +LAYLR CG V AT  T F 
Sbjct:  469 VADELDFMPMDEFQKEQFLFRQREWDTYREKLP-VMQGDLTDPAYFDFISFCQYASIASGMRRGRMIFEELIDANGTSVIVSRAPTLPQRNELLPEAHSIRVGDRLLNWMLERYDGVLRPVIPPTSSALPRAPVLVEGCQRVADIFTLNEFALTSTVTP------LASGAGVAWTLVAPATLWGAQVLQLRGDEPKNDFEVMAVLAYLRRCG-VPATSITRFE 683          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15376.3154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJT5_9PHAE3.200e-11573.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI96_ECTSI8.170e-8961.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM91_9STRA1.870e-7553.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V3L1_9STRA5.200e-5646.90Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
R1CRK3_EMIHU1.050e-5147.98Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S0ETJ5_9EUKA1.430e-5141.96Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R1DSH8_EMIHU3.900e-5147.98Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A6U4J7M3_9STRA6.210e-4943.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4F5D5_VITBC2.740e-4642.06Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A0M0K8A7_9EUKA2.730e-4445.29Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15376contigH-paniculata_contig15376:155..1933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog2880.D8LI96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGs2S59I@2759,COG0220@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_003680.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size681
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15376.3154.1prot_H-paniculata_contig15376.3154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15376 185..1933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.0718327-UTR-H-paniculata_contig15376:154..1841622929231.0718327-UTR-H-paniculata_contig15376:154..184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15376 155..184 +
1691480779.8835368-UTR-H-paniculata_contig15376:154..1841691480779.8835368-UTR-H-paniculata_contig15376:154..184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15376 155..184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.0869823-CDS-H-paniculata_contig15376:184..2581622929231.0869823-CDS-H-paniculata_contig15376:184..258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 185..258 +
1691480779.8963773-CDS-H-paniculata_contig15376:184..2581691480779.8963773-CDS-H-paniculata_contig15376:184..258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 185..258 +
1622929231.102398-CDS-H-paniculata_contig15376:752..9691622929231.102398-CDS-H-paniculata_contig15376:752..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 753..969 +
1691480779.9057562-CDS-H-paniculata_contig15376:752..9691691480779.9057562-CDS-H-paniculata_contig15376:752..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 753..969 +
1622929231.1188645-CDS-H-paniculata_contig15376:1243..14271622929231.1188645-CDS-H-paniculata_contig15376:1243..1427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 1244..1427 +
1691480779.9139266-CDS-H-paniculata_contig15376:1243..14271691480779.9139266-CDS-H-paniculata_contig15376:1243..1427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 1244..1427 +
1622929231.1331558-CDS-H-paniculata_contig15376:1757..19331622929231.1331558-CDS-H-paniculata_contig15376:1757..1933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 1758..1933 +
1691480779.924442-CDS-H-paniculata_contig15376:1757..19331691480779.924442-CDS-H-paniculata_contig15376:1757..1933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15376 1758..1933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15376.3154.1

>prot_H-paniculata_contig15376.3154.1 ID=prot_H-paniculata_contig15376.3154.1|Name=mRNA_H-paniculata_contig15376.3154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MDEFQKKFFLLRQDEWLDYKDQFPGIKQGDLTDPDYFDFISFAQHASIAE
AMRNGRQFFEEKVGAEGERRTVQRNPDYADNALLPAEHARRVGDKMLAYI
GETFGSTKLAPVTGQGQSTARLAEGCEQILNLLRLNFYMLDYSVSTNLDR
RLLMASARTIAPATIWGQRVLAKRKDRPVSDFEAKVILAYLRACGEVGAT
YSTSFNALDVVHTFQL*
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mRNA from alignment at H-paniculata_contig15376:155..1933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15376.3154.1 ID=mRNA_H-paniculata_contig15376.3154.1|Name=mRNA_H-paniculata_contig15376.3154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1779bp|location=Sequence derived from alignment at H-paniculata_contig15376:155..1933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTGCGACGACCTCGATTTCGTTCCCATGGACGAGTTTCAGAAGAA GTTCTTCTTGCTGCGGCAGGACGAATGGTTAGACTACAAGGACCAGTTTC CAGGGTACGTGTCTGCTGAGTGCTCCAAAGTCGCAGTTTGTCGTGTTCCA ACTATGGACCACATGAGTACTTTCTTTTCAAACTTTGGGGAGGGGGGTAC CCGTGTTGAGGTTATGCAGCTGACTGCAACCTTCGGTTGTTTTACATATA TGAGCAAAAGTAGATCACCAGGGAAACAGCAGGATTGCCTGCGGAAGGTG GAAGAATACCCTTTGTAAGGGTGTACCGCCGTCAATTTCAACGTTAACGA GCGAGTGGGATTGCTGCCCCCCACACCGCGATAATACAAGGCACGCACCG AAGTATTATATTTCCAACATTTGGACCGCGCGTCCCAGTACAGAAGGGTG CCGATGCAGCGAGCTGCCTTAAATTCTTGAACGTAACAAAAGGACACGGT CACCATAACCTCACATTGGCCGCTGGTGTTTCCCATTTTCCCCTCGATCC ACGGAATGTGCTGCGTTCTCAACGCTATGTGCGCTCGTTTTTTCACAGAA TTAAGCAGGGGGATTTGACAGATCCAGACTATTTTGACTTCATTAGCTTT GCGCAGCATGCTAGCATAGCGGAAGCCATGCGAAACGGGCGGCAGTTTTT TGAAGAGAAGGTTGGGGCGGAGGGCGAGAGGAGAACAGTGCAACGTAACC CCGATTACGCTGACAACGCTCTGTTACCAGCAGAGCATGCAAGAAGGGTT GGGGATAAGATGTTGGTAAGCACAAGGTTCTCGCAGATGAAGCAACGAGG CGCGGGGGGGGGGAGAAGTAAAGTGCACATTTCGGTGCCGTGTGAAGCGT AGCATGTCCCGTCCACTGTTGTGAAATTAAGAAACATCCGGACATGATCC ATGATTTCAACTGCAATAGCGAAGTACCTGAGTGTGTTGTTGTTGTGTTC ACAATGTGACCTTAATTTCCACGATACATTATTAGTAAAACATATTATTC ACACCCTACACGTACCCCCGCACGCGATGATCGGTTAAGGCGTATATTGG TGAGACATTTGGTTCCACGAAGCTAGCTCCAGTCACTGGCCAAGGACAAT CTACTGCCAGGCTGGCGGAGGGATGTGAGCAGATCCTGAATCTACTGCGG CTGAACTTCTACATGCTAGATTACTCCGTGTCTACCAACCTAGATCGACG CCTCCTTATGGCAAGTGCACGCAGTAATCATGTGTTGCTTTACACGTAGA TACCGATCCTGAAAACTTGTGTCCAGCCATGCGGAAATGATGTGTTACCC TCTTCTGATTTTCTTTCCATTTGTGAGAGGGCCGACGCCACCAGAATATG GAAAGGTCAAGAATATTATTATCGGAAGGTTTGCAACTTGCAATGTTTTA ACGTAGATGGTTTGCGGAGTGGCACATGAGATATTTCGCACATATCGATA CCAACATACGAGTACCTGATATACTCGTGTAAGCTTGTCCGTGCGTCGCG CTCGGTCTTGGGTTTGTTTCACCCTCCGTGTGTCATGACTACTCAGGTGA AAGCGATTGCCCCGGCAACCATTTGGGGGCAACGGGTGTTGGCGAAGCGG AAAGATCGACCGGTCAGCGATTTTGAAGCCAAAGTAATATTAGCCTACCT CAGAGCCTGCGGAGAAGTCGGGGCGACGTACTCTACCAGTTTCAATGCGT TAGATGTGGTCCACACTTTCCAGCTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15376:155..1933+

>mRNA_H-paniculata_contig15376.3154.1 ID=mRNA_H-paniculata_contig15376.3154.1|Name=mRNA_H-paniculata_contig15376.3154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig15376:155..1933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAGTTTCAGAAGAAGTTCTTCTTGCTGCGGCAGGACGAATGGTT
AGACTACAAGGACCAGTTTCCAGGATGGACGAGTTTCAGAAGAAGTTCTT
CTTGCTGCGGCAGGACGAATGGTTAGACTACAAGGACCAGTTTCCAGGAA
TTAAGCAGGGGGATTTGACAGATCCAGACTATTTTGACTTCATTAGCTTT
GCGCAGCATGCTAGCATAGCGGAAGCCATGCGAAACGGGCGGCAGTTTTT
TGAAGAGAAGGTTGGGGCGGAGGGCGAGAGGAGAACAGTGCAACGTAACC
CCGATTACGCTGACAACGCTCTGTTACCAGCAGAGCATGCAAGAAGGGTT
GGGGATAAGATGTTGAATTAAGCAGGGGGATTTGACAGATCCAGACTATT
TTGACTTCATTAGCTTTGCGCAGCATGCTAGCATAGCGGAAGCCATGCGA
AACGGGCGGCAGTTTTTTGAAGAGAAGGTTGGGGCGGAGGGCGAGAGGAG
AACAGTGCAACGTAACCCCGATTACGCTGACAACGCTCTGTTACCAGCAG
AGCATGCAAGAAGGGTTGGGGATAAGATGTTGGCGTATATTGGTGAGACA
TTTGGTTCCACGAAGCTAGCTCCAGTCACTGGCCAAGGACAATCTACTGC
CAGGCTGGCGGAGGGATGTGAGCAGATCCTGAATCTACTGCGGCTGAACT
TCTACATGCTAGATTACTCCGTGTCTACCAACCTAGATCGACGCCTCCTT
ATGGCAAGTGCACGCAGCGTATATTGGTGAGACATTTGGTTCCACGAAGC
TAGCTCCAGTCACTGGCCAAGGACAATCTACTGCCAGGCTGGCGGAGGGA
TGTGAGCAGATCCTGAATCTACTGCGGCTGAACTTCTACATGCTAGATTA
CTCCGTGTCTACCAACCTAGATCGACGCCTCCTTATGGCAAGTGCACGCA
CGATTGCCCCGGCAACCATTTGGGGGCAACGGGTGTTGGCGAAGCGGAAA
GATCGACCGGTCAGCGATTTTGAAGCCAAAGTAATATTAGCCTACCTCAG
AGCCTGCGGAGAAGTCGGGGCGACGTACTCTACCAGTTTCAATGCGTTAG
ATGTGGTCCACACTTTCCAGCTTTGACGATTGCCCCGGCAACCATTTGGG
GGCAACGGGTGTTGGCGAAGCGGAAAGATCGACCGGTCAGCGATTTTGAA
GCCAAAGTAATATTAGCCTACCTCAGAGCCTGCGGAGAAGTCGGGGCGAC
GTACTCTACCAGTTTCAATGCGTTAGATGTGGTCCACACTTTCCAGCTTT
GA
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