mRNA_H-paniculata_contig1537.3150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1537.3150.1
Unique NamemRNA_H-paniculata_contig1537.3150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 9.970e-87
Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 3 
Query:   93 MARFSAAFALAT-LSWASADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIG-DLAADVYDWRNPVAEVFLRR 752
            M +F+A FALA+ LS A    H  +++VRVRNLTY QPFSP L+VAHT D+ALFKEG  ASDA+KLMAEDGDNS L+++ +    + YICG V  +G +FPG+T+R T+ +D   C D PV+S+V MLIN+ND F GIDS+DL   G+ K FPP FDAGTE NNELC+H+PGPAC  DSGN+E  PGE FIHV RG HG+G DL    YDWRNPVAEVF+ R
Sbjct:    1 MVKFTAGFALASVLSLA----HATDFKVRVRNLTYLQPFSPMLVVAHTNDVALFKEGLPASDAIKLMAEDGDNSALLELAASDDVAPYICGAVAGEGPVFPGETWRGTLTIDESACPD-PVYSVVSMLINTNDAFVGIDSDDLNVYGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVPGEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 4.700e-86
Identity = 135/225 (60.00%), Postives = 173/225 (76.89%), Query Frame = 3 
Query:   93 MARFSAAFALATL-SWASA---DHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRRL 755
            M  F+AAFA+A+L S A+A   D++TV ++VRVRNLTY QPFSPPLIVAHTKD+ALFKEG  A+DA+KLMAEDGDNS L+++      + YICG VV +G +FPG+T+R  + VD  IC  NPV+S+V MLIN+ND F GIDS+ L   G+ K+FPP FDAGTE N+E CS++PGP C   SGN +  PGEG+IHV RG+HG+GDL    YDWRNPVAE+++++L
Sbjct:    1 MVNFTAAFAMASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTKDVALFKEGFPANDAIKLMAEDGDNSALLELSESSDVAPYICGVVVAEGPVFPGETWRGQLDVDPYIC-PNPVYSVVTMLINTNDAFVGIDSDTLEL-GSTKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGPGEGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQKL 223
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 2.450e-73
Identity = 120/194 (61.86%), Postives = 140/194 (72.16%), Query Frame = 3 
Query:  162 EYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIG-DLAADVYDWRNPVAEV 740
            E  VRVRNLTY QPFSP  +VAHT D+++F+EG  ASDAVK+MAEDGDNS L+++L+      YICG V+ +  LFPG T+R  M VD  IC D   +S+V MLIN+ND F GIDS  L   G  K FPP FDAGTE NNELC+H+PGPAC  DSGN+E  PGEGFI V RG HG+G DL    YDWRNPVAEV
Sbjct:    6 EVYVRVRNLTYLQPFSPMFVVAHTNDVSIFREGFPASDAVKIMAEDGDNSALVELLASEDVEPYICGGVMGEAPLFPGDTWRGVMTVDESICPDAQ-YSVVSMLINTNDAFVGIDSNRLV--GTEKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEV 196
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 5.760e-49
Identity = 94/197 (47.72%), Postives = 121/197 (61.42%), Query Frame = 3 
Query:  168 RVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPAC--EPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRR 752
            +VRV NLT++Q FSPP+IVAH K   LF  G  A  A+KLMAEDG+N    ++++        CG+   +G L PGKT+   +  DT+ C + PV+S+V  L N+ND F GID          K FPP FDAGTE+NNE C+ MPG AC   P S        EGFIHV RGI+G+GDL+   Y W+NPVAEV + +
Sbjct:   76 KVRVTNLTFKQDFSPPIIVAHEKGSHLFPVGGKARPAIKLMAEDGNNR---NIMAIATREGGFCGFAAAEGPLLPGKTWNGEITFDTDKCKE-PVYSVVAKLTNTNDAFMGIDGSKFLDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKSRENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSK 268
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 8.610e-48
Identity = 92/200 (46.00%), Postives = 121/200 (60.50%), Query Frame = 3 
Query:  165 YRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSG---NLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRRL 755
            Y+VRV NLT++Q FSPP+IVAH K   LF +G  A  A+K MAE+G N   I++++  +     CG+   +G L PGKT+   +  D   C   PV+S+V  L N+ND F GID          K FPP FDAGTE+NNE C+ + G AC        NL     EGFIHV RGI+G+GDL+   YDW+NPVAEV + ++
Sbjct:    4 YKVRVTNLTFKQDFSPPIIVAHEKGSPLFSKGRKARGAIKRMAEEGVNRF-IEIIATREDG--FCGFAAAEGPLLPGKTWNGEITFDANKC-KRPVYSVVAKLTNTNDAFMGIDGSKFLDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSKV 199
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 6.440e-47
Identity = 94/199 (47.24%), Postives = 120/199 (60.30%), Query Frame = 3 
Query:  165 YRVRVRNLTYRQPFSPPLIVAHTKDIA-LFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPAC--EPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRR 752
            Y+VRV NLT++Q FSPP+IVAH K    LF  G  A  A+K MAE+G N + + V++  +     CG+ V +G L PGKT+   +  DT  C + PV+S+V  L N+ND F GID          K FPP FDAGTE+NNE C+ MPG AC   P +        EGFIHV RGI G+GDL+   Y W NPVAEV + +
Sbjct:   18 YKVRVTNLTFKQDFSPPIIVAHEKGSRPLFSMGGKARPAIKRMAEEGVNGM-VKVIATRESG--FCGFAVAEGPLLPGKTWNGEITFDTNKCKE-PVYSVVAKLTNTNDAFMGIDGSKFLDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKTRENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSK 212
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: UPI00145E4F1F (spondin domain-containing protein n=1 Tax=Candidatus Competibacter phosphatis TaxID=221280 RepID=UPI00145E4F1F)

HSP 1 Score: 144 bits (364), Expect = 1.690e-36
Identity = 86/222 (38.74%), Postives = 126/222 (56.76%), Query Frame = 3 
Query:   96 ARFSAAFALATLSWAS-ADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEI-CGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRRL 755
            A  + A A ++  +AS A H    Y V + NLT    F+P L+ +H   + LF  G++ASD +  MAE GD   L D+L     S  + G     G L PG++      V  E+  G+    S+  M++ +NDGF  ++  ++P +G+     P +DAG+E N+ELC+ +PGP C  + G+ +A  GEGF+H+  GIHGIGDL A  YDWRNPVA V + R+
Sbjct:   15 APLTGAQAQSSNDYASIARHGNPMYAVTITNLTRGSSFTPILVASHRPGVELFTLGQAASDELAAMAEGGDTMPLEDMLLS---SGRLVGTGHSAGLLGPGQS------VTVEVPAGNANRISLAAMILPTNDGFIALNGVEVPRAGSQTFRVPGYDAGSEPNDELCASIPGPLCGGEGGSPDAG-GEGFVHIHAGIHGIGDLNASAYDWRNPVATVTVERV 226
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: A0A836W2I8_9GAMM (Spondin domain-containing protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A836W2I8_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 2.760e-36
Identity = 86/213 (40.38%), Postives = 123/213 (57.75%), Query Frame = 3 
Query:  120 LATLSWASADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSF-PPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRRL 755
            LA  + AS +HH   Y+V + NLT  Q F+P L+++H   +  F  GE ASDA   +AE GD   L  ++S    +  +       G L PG+T   T+ VD    G     S+  MLI +ND F G+++   P     K++  P +DAG+E N+ELC  +PGP C  + G+  A  GEG++H+  GIHGIGDLA + YDWRNPVA+V ++R+
Sbjct:   14 LAGTAQASDNHH---YKVTITNLTKAQVFTPILVLSHRNGVHPFVVGEPASDAFAALAEGGDIMPLEMMMSG---NSKVVDINNSGGLLMPGETV--TVFVDAS--GHARRISLASMLIPTNDSFIGLNNVVAPRGHGKKTYWVPAYDAGSEPNDELCVSIPGPVCGGEGGSPGAG-GEGYVHISSGIHGIGDLAPETYDWRNPVAKVVVQRV 215
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BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: A0A1Y1QLV8_9GAMM (Spondin domain-containing protein n=2 Tax=Thiothrix TaxID=1030 RepID=A0A1Y1QLV8_9GAMM)

HSP 1 Score: 143 bits (360), Expect = 4.750e-36
Identity = 89/222 (40.09%), Postives = 123/222 (55.41%), Query Frame = 3 
Query:  105 SAAFALATLSWASADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPV--FSMVGMLINSNDGFAGID--SEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASP-GEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRRL 755
            SA   L+   +A AD   + Y+V + N+T  Q FSPPL+V H+    LF  G++AS  +  +AE     LL + ++    +  +         + PGKT         E+ G N +   S+  ML+N+ND F  ++  S D  Y+         +DAG+E NNELC+H+PGPAC P S NL A+   EGFIHV  GIHG GDL+A  YDWRNPVA V +RR+
Sbjct:   12 SAGILLSLAPYAMADR-PITYQVEITNITQDQVFSPPLLVLHSPQQKLFSLGQAASPGLATLAETAGTDLLKEEITSLFRNAQV---TTGTAPIPPGKT------ATYELSGGNKLSRLSLASMLVNTNDAFLSLNAISPDGSYTAIA------YDAGSEANNELCTHVPGPAC-PGSANLRATDTAEGFIHVHNGIHGQGDLSAAKYDWRNPVALVNIRRI 216
[Close]
BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Match: A0A2A5G8K9_9GAMM (Spondin domain-containing protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A2A5G8K9_9GAMM)

HSP 1 Score: 142 bits (359), Expect = 7.380e-36
Identity = 81/211 (38.39%), Postives = 121/211 (57.35%), Query Frame = 3 
Query:  120 LATLSWASADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDIALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFPGKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKSFPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIGDLAADVYDWRNPVAEVFLRR 752
            L   S A+A +    Y V + NLT    F+P L+ +H   + LF+ G +AS+ +  +AE GD + L   LS       +       G L PG++   T+ + TE        S+  M++ +NDGF  I +  +P   +   + P +DAGTE N+E+C+++PGP C  +  + E S GEG++H+ RGIHGIGDLAADVYDWRNPVA++ + R
Sbjct:   18 LLASSSATAGNKVRVYDVTITNLTNSITFTPILVASHRNGVTLFEAGSAASEGLTAIAEGGDTAPLAASLSA---DNRVAEVKSSGGLLGPGESV--TVEIKTE--RHKRRISVASMMLPTNDGFIAIQNIKVPKKRSKTVYSPGYDAGTEPNDEVCANIPGPTCGGEGLSPEVS-GEGYVHINRGIHGIGDLAADVYDWRNPVAKITITR 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1537.3150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4K4_ECTSI9.970e-8761.26Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7FIE5_ECTSI4.700e-8660.00Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K3_ECTSI2.450e-7361.86Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G3Z4_ECTSI5.760e-4947.72Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G413_ECTSI8.610e-4846.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G405_ECTSI6.440e-4747.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00145E4F1F1.690e-3638.74spondin domain-containing protein n=1 Tax=Candidat... [more]
A0A836W2I8_9GAMM2.760e-3640.38Spondin domain-containing protein n=1 Tax=Thiotric... [more]
A0A1Y1QLV8_9GAMM4.750e-3640.09Spondin domain-containing protein n=2 Tax=Thiothri... [more]
A0A2A5G8K9_9GAMM7.380e-3638.39Spondin domain-containing protein n=1 Tax=Thiotric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1537contigH-paniculata_contig1537:17677..23199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue3e-71
Seed eggNOG ortholog2880.D7G4K4
Hectar predicted targeting categorysignal peptide
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1576
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1537.3150.1prot_H-paniculata_contig1537.3150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1537 18495..23107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.6081607-UTR-H-paniculata_contig1537:17676..184941622929230.6081607-UTR-H-paniculata_contig1537:17676..18494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1537 17677..18494 -
1691480779.6488948-UTR-H-paniculata_contig1537:17676..184941691480779.6488948-UTR-H-paniculata_contig1537:17676..18494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1537 17677..18494 -
1622929230.7116454-UTR-H-paniculata_contig1537:23107..231991622929230.7116454-UTR-H-paniculata_contig1537:23107..23199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1537 23108..23199 -
1691480779.7100642-UTR-H-paniculata_contig1537:23107..231991691480779.7100642-UTR-H-paniculata_contig1537:23107..23199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1537 23108..23199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.6220152-CDS-H-paniculata_contig1537:18494..186881622929230.6220152-CDS-H-paniculata_contig1537:18494..18688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 18495..18688 -
1691480779.657885-CDS-H-paniculata_contig1537:18494..186881691480779.657885-CDS-H-paniculata_contig1537:18494..18688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 18495..18688 -
1622929230.633522-CDS-H-paniculata_contig1537:20093..201831622929230.633522-CDS-H-paniculata_contig1537:20093..20183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 20094..20183 -
1691480779.6652215-CDS-H-paniculata_contig1537:20093..201831691480779.6652215-CDS-H-paniculata_contig1537:20093..20183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 20094..20183 -
1622929230.6486487-CDS-H-paniculata_contig1537:20842..209961622929230.6486487-CDS-H-paniculata_contig1537:20842..20996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 20843..20996 -
1691480779.672585-CDS-H-paniculata_contig1537:20842..209961691480779.672585-CDS-H-paniculata_contig1537:20842..20996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 20843..20996 -
1622929230.6647654-CDS-H-paniculata_contig1537:21648..217321622929230.6647654-CDS-H-paniculata_contig1537:21648..21732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 21649..21732 -
1691480779.6798692-CDS-H-paniculata_contig1537:21648..217321691480779.6798692-CDS-H-paniculata_contig1537:21648..21732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 21649..21732 -
1622929230.6837618-CDS-H-paniculata_contig1537:22088..221541622929230.6837618-CDS-H-paniculata_contig1537:22088..22154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 22089..22154 -
1691480779.6874714-CDS-H-paniculata_contig1537:22088..221541691480779.6874714-CDS-H-paniculata_contig1537:22088..22154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 22089..22154 -
1622929230.6969466-CDS-H-paniculata_contig1537:23029..231071622929230.6969466-CDS-H-paniculata_contig1537:23029..23107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 23030..23107 -
1691480779.6968923-CDS-H-paniculata_contig1537:23029..231071691480779.6968923-CDS-H-paniculata_contig1537:23029..23107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1537 23030..23107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1537.3150.1

>prot_H-paniculata_contig1537.3150.1 ID=prot_H-paniculata_contig1537.3150.1|Name=mRNA_H-paniculata_contig1537.3150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MARFSAAFALATLSWASADHHTVEYRVRVRNLTYRQPFSPPLIVAHTKDI
ALFKEGESASDAVKLMAEDGDNSLLIDVLSDPKYSKYICGYVVDDGALFP
GKTYRDTMVVDTEICGDNPVFSMVGMLINSNDGFAGIDSEDLPYSGAVKS
FPPCFDAGTEENNELCSHMPGPACEPDSGNLEASPGEGFIHVQRGIHGIG
DLAADVYDWRNPVAEVFLRRL*
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mRNA from alignment at H-paniculata_contig1537:17677..23199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1537.3150.1 ID=mRNA_H-paniculata_contig1537.3150.1|Name=mRNA_H-paniculata_contig1537.3150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5523bp|location=Sequence derived from alignment at H-paniculata_contig1537:17677..23199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCCCCACCCTGACACCTTCACTTTCATCTCCAACTCCTTCAGCACA
AGAAGTATCTACGACCTACACCTCAAACTACCAAGATCGACAATGGCCCG
CTTTAGTGCAGCTTTCGCTCTCGCCACTCTCAGCTGGGCAAGCGCTGATC
ACCACACCGTGGAATACAGGGTATGTTTACTGTACAGCATGGGTTTCCTC
TAAGAAGTATTTGGTACCTGTCACTGACTCAAGTAAAGGATCCCATCGAG
TCCAACTCCTTTCGTAGCTGATACTTTCAAGTATATTGAAAGGTTCAACC
CTCCGCGACTGTCTCCCACGTGTGAGGCCCAGACCGGCGAGCTCGTTTCC
TGCAACGACGTAGTTTGTGTATTATCGCTTGTTGAGACACAATTTGTTAT
AAATAAGCGAAGGGAAAAAAGAGAGGCAGGTAGCGGTATTCGGCACCAAC
TACAAGTAGTGTTTATTTGAGAAGTTGGATCCCTTCTCTCATTTGCCCGC
GTGTTAATATACTGTCTTTTGTAAGGTGCACGTTCACAGTTGACGTGGTT
GATGCTTTGGAGCAAACGGGGTCGGGTCGAGACTTGCTTGTTTCGACAAA
GTTTGTTTATTTATGTAGAGGGGTGAAGTTTTGGTGAGGGTTAAGAGAGA
ATTCTGGTATGCCAAAAGGGAACGAGCGATAGTTGTCTTTCATGTTTTCG
TCGGTGCCCTCTTCGTGTTTTAGTGGAACCGTGGATTTGCCGGAAATGAC
TTACGATACGAGATAATATATATTAGGTGGCAATCTGTTTTTCCGATCGG
TGCAGACGAGCGTCACGATCCACACAGCATCCGTCGCGAGTAGTGCCTTA
CGGCTATATTCCTTCGTATATTTCTTGTGAATTTCCTCCTCACGCGCAAG
TTTCTTGCTTACCACCTCGTTGTTCGGCCGTCAACTCTTGAGGCCTCAGG
CAATCCACGCGCGATGTTCACTGAAAGACGCGATGCCAATCCTTTGACAG
AATCCCCTTGTCTCGCACCGTGCCGTCTTGCCAATGTGGCCATAGGTGCG
CGTGAGGAATTTGACCTACAGGCAGCCTTTCTCTCCCCCTCTTATCGTGG
CGCACACCAAGGTGAGTTTGCTTCATTAGGAGGAACTGGATCCAACACAT
GTTTTCAAGTATTATTTGGACAGCAAGTACAGTCCATAGCTCTAGCTGGT
GCGTGCCCGATCTTTTGTGTGTACATAACAACTCATCATATAAACGTTTG
ACGCAAGACAACCGTCAATTAATTACCGACGATCCACTCAACAAGGGGCG
CTCCTTTCGGTGGGTTTCTAATTGTTTTGAGTAAGACATAACTTATTGTG
ATTTCTTTAAACATGGTGCGATAAAAAGGCATTCTCTGGCTTGTGTATTA
TGCCCACTTCAGTCAAACTACATCCCTATTTAATTGCGTTTCTATTTTCT
ATACGCACTATACACAGGATATTGCGCTATTCAAGGAAGGGGAGTCTGCC
AGCGACGCCGTGAAGCTTATGGCAGAAGACGGCGACAACTCCTTACTTAT
TGTGAGAGGCCTCATCCCCCGTGTCGCGTATTTACTGAAAAATCTTTGCA
GGGGCGAGTAATCGGATTGACTCAAAAGGCGGTAGTGGTATTGCCGCGCG
TCATCGTTTATGGTTGATTTTCCAGCGTATCATCCCGTGGGCACCCATGC
CGATAATAGTGCTCCCGTAAATATGTCGCACAATCACCTAGGGTCGCAGG
TGTTAAGAGTTAGTCTGAGAATTCTGTCTTGGAGCCATTAGAATTGCATC
TGTCTTCAACTATATATACCATGGTATACAACACATGCGATTGATATAGT
TTTACAGTAATAGCAGTTTAGACTTACTCGTTCCCATAAACGGCGGTTGC
TTGTCGTTTTCTGGTGACGCTGCGAGCGCTATTATCAGTTGAATGAACTC
CTAAACGTGACAAAAATCGGTGCAAAACGACGCGTGTTCCTTAAAACGAC
GCCCCCCCCCGACAAGTAGTACTACGCGGTGAGCGCACCCAGCGGAGGAG
TTACAGTGGCCGCGACGTCTCCGACTCCTTGCACCCTCGCTAGTATAAGC
TAAACCCGCTCACGCACGATAATTACAGCCCTAATTCGTGCATTTTCGCA
CACATGTCCTTTCTATGCGCTGTCGATGGACCTGTATCTCAACCGTCTCG
CAGGATGTCCTCAGTGACCCTAAGTACTCCAAGTATATCTGTGGATACGT
CGTGGATGACGGCGCACTATTCCCCGGAAAGACCTACAGGGACACAATGG
TGGTAGACACCGAGATCTGCGGGGACAACCCGGTGTTCTCGATGGTTGGC
ATGCTCAGTGAGTTTCTCTTTTAGAGGCGGTTTTATGCATTTGTTTATTT
CGTAAAGACATGTATGTTGACTTGAAGTCATGTGTTCATAATGGAAATCA
GCTCATTAAAAATGGTCGACTGGTTGTCTTTTCCTGCCTTGTCGGGCTTG
CGAAAGATCCAGCGCCAACATTGAGGGTTAGAATGTACACCAAAATATGC
CAATAAACGAACAGAATCCCAAAACAATGCGAGGAGTGTTGGGCTTCGCA
GTGTTCAGTCTTGGTCGCAAAATATCCACATTAATCCGAGGAAGGTGCGG
GGGTAGATACGCAGCCCGCACCGTCTCTTGGCGTTTTATTACCAACACAA
AACAAGAAAGTGCACGGTATCTTTTACTTGGCACAGACATGCGCCCCCCC
CCCCCCCCCTAATACCGTGTCATCCCTGGCTTCTGCCCGTTACCTTATAC
TATGTCTGGTGGAGAAACTTGTATTCGTGTACGAGTGGATCTTTAACGCC
TGCATTAGTCGTGAGATCCCACGAAATATGCACTGACTTACGGCGTGCCC
GAAACCCCAAACTCTCCGTGTTGCTTACACAACCTCGCCCCCCACCCTCC
TCGTGTCCTCCGCCCCCTCTTGCTCACATTTGATTGTTCTACCCCGGGTT
GCCTCGCCGCGAACAGTCAATAGCAACGACGGATTTGCGGGCATCGACTC
CGAAGACTTACCGTATAGTGGTGCGGTCAAGTCCTTCCCCCCGTGCTTCG
ACGCCGGTGAGAAAGCATTGATACTATCTGGCGTCGTTTCTGTCCAATGT
GCAGGACATTACATTGGACGGAAGTAACAAGAAAAATGTGTTGAGTTACA
TATTCTGAACAATGCGTTGTTGTTGCAGCGAACGGTTCCTACAAGAAATC
AAGAGTCGGTCGTTTGCAAATGGCGTCTACCAGCTAGTGTAAGTATTATG
TGTTCACCGGACAGCAGGGCAGAACGCCCGATCAGCCATTCTCTATCCGC
TGAGAAGGGATTCTCAGTCTATTTGTTCTGGAGATAAGAGTTTTGACCTA
CTCTGTTTAACCTGCTCTGATGCATAACGTACTTGTCGGGCACCAAGTAT
CTCTGTAATGGTGTCAGAAACCACCGGCAAAATCACACCTCGAAAATCCC
GAATACGTTTCGATATGTTGGGCGCAAAACGCCTGCTGTTGTTATTTGTG
TTTCTTTCAAGGGCCTCGATTCTTTTGTTTGCCAGTTCCAGCTGGTAGTT
TTAACGTGTTAACATATTTTTCCCTCACCCTTTTAAAGACACTAGGAAAC
AGAAACTGGCCTGAACACGCGAGAGTAGAGGGAGATAGGGTGGGTAAAAT
GGTTTTGAGCCACATTTGGCAACGTAGGAAATAGTGCTTGGATATCGGAA
ATCACTCTGATGGGAGCAAGCACCGCCCTCCCGAGGACCCGTGGCCAATT
GTCTAACAACTACGACATGCAAAGCATGAGTACCCCGCTCCCCCCCCTCT
AAAGATTCTAGCTCTAGGATACAAGGGAGATATGATCACGCGGTATGTTT
CGTGAGGTCGTTAACGTCAGTGGAAACGTTTACACCCTCGAGGTTATCCA
CCGTATACGGGGTACTTGGAACGCTCCAGAGCAAAATATGTTTCCGTTGT
ACCTTGTCTAGAGTTCATAAAGCGCGCTACCTTTGTGCGTCTACCTTGTG
TACGATGCGTTATTTACACGTGTGGGGGGGGAACAAAGTCCCTTGCGGTA
CTTTCGAATATAGCCACGCCTAACGAATGTACATCAATCTTCTATTTGCG
GGATGCCCAACGCACCTGTGGCACGCGCGGTTGGTGTAAAGCCGTACGGG
TGGTGACTAACTACTTGTATCAATCGCTCTTCTTTCTGGAACGCATCTTT
GCGCCCACGAAAATCCGGTAGAAAGGTCGATGCTCTTTGATTATGCAAGC
TTTGCAGTAAATCCCCCCCCCCCCCCTTGTGCCTTTTCATCATTTCAAGT
GGTAATAAAATGCCGATTATCACGAACACAACGCGTATCTGATTGCAACC
GCCTCTGGAGTTGTTGTTTACTCTGTGGCTGATCTTGTGGACTATGTCTA
TCTCTACGATATTCTATTTAAGCAACCCTCCCCTCCTCCTCGTGTATCAC
TACTGCAAAAGGAACCGAGGAAAACAACGAATTGTGCAGCCACATGCCCG
GTCCCGCCTGTGAGCCCGACAGTGGCAACCTCGAGGCATCTCCCGGGGAG
GGCTTTATCCACGTGCAGCGCGGTATCCACGGTATTGGCGACCTTGCTGC
GGATGTGTATGACTGGCGCAACCCCGTGGCCGAGGTGTTCCTCCGCCGCC
TTTGAGTTGATCTATTGATGTCATGAACCTTGTGAACCTTTGTATTTTTG
GGGGTCAACCCGGCACAATATCTGTTACTGTCTCTTCAGCATAGACCGCC
GACCGATCTGTTATTTGATTTCCAGTGACAATCTGTTTTCTGGCTCCCAT
ATGATACGTAAATTGAAGCTCGGTTCGCCGTAAAGGCCTGTCCTCTGATT
TTTCGTATCTGTCTCTTATAGGCGAGTATTAGTTAGATCTGGTCTGCTTT
CACATCGGTTGATTTGTCTTGTATCGAATGGACACAGCTAGTTGGCAGGA
TGTTTCGATTGATGCCTTTGTGAGCTGGATGTACTATTCCAATATATTTG
AGATTAGTACGCAAGTATGTCGATTTGGTATTCAAATGCCAAGCGACTAG
GCTGTATTCCTGAAATGTTACTATTAGGTCAAAGTATCGTGTGGGATACT
ACCGTGGAGGGATGTATCTTGCTTTGTTTGGGAGGGATGGAAGACGTTGA
TCACAGGATAACATCTTTTTCCTTGGTTGTTCTGCGTTACCTAAGAGTTG
CGTTGATTCTTGGCGACTTTGAAACGCCTGTATCGAACAGTAAGTGTGAT
AATAAAAATGAATCGAGTATTAAATTTCAGGGTTTGCCACTGGACCACGG
GACCCTCGCAGGACAGGACAGGATCGGACGGGACGGCGGTTCCGTCCCGT
CCGGTAGGTTTTCTGGGGCATAGTGTCCTATCCCGTTGAATATTTCACAT
ATCGGATGACTATGACTAACAGTCCGGGCAGTCGTAGTCGTAGTCGTTAT
GTGTTTTTTCTACTAGTCCACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1537:17677..23199-

>mRNA_H-paniculata_contig1537.3150.1 ID=mRNA_H-paniculata_contig1537.3150.1|Name=mRNA_H-paniculata_contig1537.3150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig1537:17677..23199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCGCTTTAGTGCAGCTTTCGCTCTCGCCACTCTCAGCTGGGCAAG
CGCTGATCACCACACCGTGGAATACAGGATGGCCCGCTTTAGTGCAGCTT
TCGCTCTCGCCACTCTCAGCTGGGCAAGCGCTGATCACCACACCGTGGAA
TACAGGGTGCGCGTGAGGAATTTGACCTACAGGCAGCCTTTCTCTCCCCC
TCTTATCGTGGCGCACACCAAGGTGCGCGTGAGGAATTTGACCTACAGGC
AGCCTTTCTCTCCCCCTCTTATCGTGGCGCACACCAAGGATATTGCGCTA
TTCAAGGAAGGGGAGTCTGCCAGCGACGCCGTGAAGCTTATGGCAGAAGA
CGGCGACAACTCCTTACTTATTGATATTGCGCTATTCAAGGAAGGGGAGT
CTGCCAGCGACGCCGTGAAGCTTATGGCAGAAGACGGCGACAACTCCTTA
CTTATTGATGTCCTCAGTGACCCTAAGTACTCCAAGTATATCTGTGGATA
CGTCGTGGATGACGGCGCACTATTCCCCGGAAAGACCTACAGGGACACAA
TGGTGGTAGACACCGAGATCTGCGGGGACAACCCGGTGTTCTCGATGGTT
GGCATGCTCAGATGTCCTCAGTGACCCTAAGTACTCCAAGTATATCTGTG
GATACGTCGTGGATGACGGCGCACTATTCCCCGGAAAGACCTACAGGGAC
ACAATGGTGGTAGACACCGAGATCTGCGGGGACAACCCGGTGTTCTCGAT
GGTTGGCATGCTCATCAATAGCAACGACGGATTTGCGGGCATCGACTCCG
AAGACTTACCGTATAGTGGTGCGGTCAAGTCCTTCCCCCCGTGCTTCGAC
GCCGTCAATAGCAACGACGGATTTGCGGGCATCGACTCCGAAGACTTACC
GTATAGTGGTGCGGTCAAGTCCTTCCCCCCGTGCTTCGACGCCGGAACCG
AGGAAAACAACGAATTGTGCAGCCACATGCCCGGTCCCGCCTGTGAGCCC
GACAGTGGCAACCTCGAGGCATCTCCCGGGGAGGGCTTTATCCACGTGCA
GCGCGGTATCCACGGTATTGGCGACCTTGCTGCGGATGTGTATGACTGGC
GCAACCCCGTGGCCGAGGTGTTCCTCCGCCGCCTTTGAGAACCGAGGAAA
ACAACGAATTGTGCAGCCACATGCCCGGTCCCGCCTGTGAGCCCGACAGT
GGCAACCTCGAGGCATCTCCCGGGGAGGGCTTTATCCACGTGCAGCGCGG
TATCCACGGTATTGGCGACCTTGCTGCGGATGTGTATGACTGGCGCAACC
CCGTGGCCGAGGTGTTCCTCCGCCGCCTTTGA
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