mRNA_H-paniculata_contig15363.3146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15363.3146.1
Unique NamemRNA_H-paniculata_contig15363.3146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15363.3146.1 vs. uniprot
Match: D8LEH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.180e-31
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 3 
Query:    3 VTLRNGDVMARKGCGIVLHTKVEGRVDHVWLKCRSNQDRGALVDALVRWHESWTPELPELNVQQVPETTLSAHLSRVTRAQSGSSIRRKDTDCIIS 290
            VTLRNGDV+A++GCGIVLHT VEGR  ++WLKCRSNQDRGALV+ALV W E+ +P   ELNVQQVPE+ ++  L+R+  A     +RRKDTDC+IS
Sbjct:  425 VTLRNGDVVAKRGCGIVLHTSVEGREGNLWLKCRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGGSDVMRRKDTDCLIS 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15363.3146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEH6_ECTSI2.180e-3164.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15363contigH-paniculata_contig15363:1805..4041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004650.1
Exons2
Model size842
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15363.3146.1prot_H-paniculata_contig15363.3146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15363 1831..3492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.2831929-UTR-H-paniculata_contig15363:1804..18301622929230.2831929-UTR-H-paniculata_contig15363:1804..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15363 1805..1830 +
1691480779.526888-UTR-H-paniculata_contig15363:1804..18301691480779.526888-UTR-H-paniculata_contig15363:1804..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15363 1805..1830 +
1622929230.3393636-UTR-H-paniculata_contig15363:3492..40411622929230.3393636-UTR-H-paniculata_contig15363:3492..4041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15363 3493..4041 +
1691480779.5570748-UTR-H-paniculata_contig15363:3492..40411691480779.5570748-UTR-H-paniculata_contig15363:3492..4041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15363 3493..4041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.3041034-CDS-H-paniculata_contig15363:1830..19981622929230.3041034-CDS-H-paniculata_contig15363:1830..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15363 1831..1998 +
1691480779.539074-CDS-H-paniculata_contig15363:1830..19981691480779.539074-CDS-H-paniculata_contig15363:1830..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15363 1831..1998 +
1622929230.32089-CDS-H-paniculata_contig15363:3393..34921622929230.32089-CDS-H-paniculata_contig15363:3393..3492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15363 3394..3492 +
1691480779.54762-CDS-H-paniculata_contig15363:3393..34921691480779.54762-CDS-H-paniculata_contig15363:3393..3492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15363 3394..3492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15363.3146.1

>prot_H-paniculata_contig15363.3146.1 ID=prot_H-paniculata_contig15363.3146.1|Name=mRNA_H-paniculata_contig15363.3146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MARKGCGIVLHTKVEGRVDHVWLKCRSNQDRGALVDALVRWHESWTPELP
ELNVQQVPETTLSAHLSRVTRAQSGSSIRRKDTDCIIS*
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mRNA from alignment at H-paniculata_contig15363:1805..4041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15363.3146.1 ID=mRNA_H-paniculata_contig15363.3146.1|Name=mRNA_H-paniculata_contig15363.3146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2237bp|location=Sequence derived from alignment at H-paniculata_contig15363:1805..4041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTAACGCTTCGCAACGGCGACGTGATGGCGAGAAAGGGATGTGGCATC
GTGCTGCACACGAAGGTCGAGGGGCGGGTGGATCACGTTTGGCTTAAGTG
CCGATCGAATCAAGATCGAGGGGCCCTCGTGGACGCCTTGGTCCGATGGC
ACGAGTCTTGGACGCCGGAATTGCCGGAGCTGAACGTACAGCAGGCGAGA
GTGAGCGGGTCCCTTGAAAACACACACACACACACACACACACACACACA
CACACTTGCTCTCTACACGATATGCATGCACTACACCTCAGTCGTGGAGT
TAGGATACATGCCCCGCAGGAGATAGGAAAGGATAGAGCGAATATCCCTA
CATACGCTGGGAGCAGGAACGGTGCTGGAGGGGAAAGTGACCTGATGGTG
TGATAAAATTATTTTCTCCATATCGTGTCAGTACTATTCGGCATACGATA
CCACGTTACGGTATATTGATCTCTCGGTATTTACGCGGTAACCAGTATTT
GCCCGCCTCAGTGTTGTGGTACAGTAAGTTAGTGTTTGTTTTTTTTGTAG
TATCGTGTGGTGTGGTATCTGCTATTTGGTTTTTACGACTCGCCAGGCAC
CGACAGCCTGTTTACCCGAGTGCCGCACGTAGTTATGTTGGCACATACGT
GTCACACAACGTTGGAAAGTTTATTTAAAGGCGAAGTACCACGCACCACA
CGACGCTTGCGTACAATTCAATCATTGCGTTTGCCGGTGTGGTCATTACG
TGATGCACTTGTGTGACGGACGTATGATCGTCCCAAGAACAAGAAGAAAC
TTCTTGTTCTGTTAAAGGAAATGTAGACATGTTTGGGAGAAAATCTGAAT
GTGGAAACAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAA
AACAAAAACTTCTTGAAAGCAATGAACGTAAATCAACTGAAAACTCCCCG
ACAACAATACCCTGAACTACTGTCAGGCGAAGCGGTAGTGGTGACTACAG
AGCCAGCAGCACTCGCAGAGCCAGTGGTGTTCGAGCTGTCATGACTAGCA
GCTGCCGCGCTCGTATGTATAATCATGACATATGGTGCTGCCGTACACAA
ACACATTCAATCAGACCCGCAGTCGTGGCGACTTATTCCGCTTTTTGACG
GGACGGAAAAGGAGTTTGATCCCACTGTAATTAGGTCTTGCTGTATCGTG
TATGGTAACAGCAAACTGGAAATCGAGTTTTTCACGGTTACAGTACCGAA
TACCGAGTACTGGGGTGTACCGCGGTATTTTATGTGCAGTTTTGTTACGG
AGAACAGTCCTAGATTTCCCCCCCTGCTATGTGTGGTCCGACGATTTGCG
GATTCTATTGCTGATCGGATGCTGATCAAATAGAGGCAACATGATATTTG
ATCAGTCAAGAGAACGGTAGATAATTATCCTCGAGAAAGTTATCTGTTGT
GCACAACCAACCGAAACCGCGTTTGTTTCTTTTTTATTGTTTTTGGTTCC
TTCTTCCGTGTCGAAAATCAACAACCTGTATTCATTGGTTCGATCCGGTC
CGGTCTGATCCGGTATTTTCTTGTGTTTTGCGTTTTCAGGTACCGGAAAC
AACTCTATCGGCCCACCTTTCTCGAGTGACCAGAGCTCAAAGTGGATCAT
CCATCAGGAGAAAAGACACGGACTGCATCATATCTTGAGGAATACCGGGG
AGGCGGGGGCGTTTTTCAAGCGCGATAATGCTGATCGGATCGCGGGTGAA
TTGAACGTATTTGGTCGGGCGCGAAAAGAACGATACAAATAGGGCCGGGT
TTTGGATGAATCATCCATACCCTACCAACAATATATAGAGACTGCCACGA
GGACTGGCCAAGGGGGCGTGTGGACAAGTGTCGATCCGCTGGCCCGCGTA
TCTTGTATCTAGCAAACGATGATCAAATCCGGGTTGGCAAGATGTGCTGT
GTTTTATTTTACGGGCGAGCGCTGATGGGCGGAGCTCGCGTGTTTGTCTC
CTGTAGGCCGGTGAGCCGTCAGCGTCGTGCCGTCAAATAGTACCGGTTGC
GGTGGCGGAAGCGTCATTGTCGACACTTGAGCTTCCTCTTTTAGATAACG
TGCGCTATTGTAAATGCATGGCATCATTGCGAAAGACAACAAGAGGAAAA
TTGTCTTGAACCGGCAGTTTTGTTTTCCTAATGGGCGATTTATTTATTTT
TTTATTTTCTTTAAAAAGGAAGAACGTGATTAGTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig15363:1805..4041+

>mRNA_H-paniculata_contig15363.3146.1 ID=mRNA_H-paniculata_contig15363.3146.1|Name=mRNA_H-paniculata_contig15363.3146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig15363:1805..4041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGAAAGGGATGTGGCATCGTGCTGCACACGAAGGTCGAGGGGCG
GGTGGATCACGTTTGGCTTAAGTGCCGATCGAATCAAGATCGAGGGGCCC
TCGTGGACGCCTTGGTCCGATGGCACGAGTCTTGGACGCCGGAATTGCCG
GAGCTGAACGTACAGCAGATGGCGAGAAAGGGATGTGGCATCGTGCTGCA
CACGAAGGTCGAGGGGCGGGTGGATCACGTTTGGCTTAAGTGCCGATCGA
ATCAAGATCGAGGGGCCCTCGTGGACGCCTTGGTCCGATGGCACGAGTCT
TGGACGCCGGAATTGCCGGAGCTGAACGTACAGCAGGTACCGGAAACAAC
TCTATCGGCCCACCTTTCTCGAGTGACCAGAGCTCAAAGTGGATCATCCA
TCAGGAGAAAAGACACGGACTGCATCATATCTTGAGTACCGGAAACAACT
CTATCGGCCCACCTTTCTCGAGTGACCAGAGCTCAAAGTGGATCATCCAT
CAGGAGAAAAGACACGGACTGCATCATATCTTGA
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