mRNA_H-paniculata_contig1535.3142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.630e-32 Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGE--ETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYY 770 R V AA+++ FH RP HL+ ++ DE+S L+WSADL L+ V + P YTL RRV G+ +W+W YRG Y DGA+S WITE+EA DSF+PLQLDVFHALWE++HP RP T+ R AL + V + +D E S+ ++ +V+ + PY+ Sbjct: 1472 RRVVAADVKPFHQRPAHLQLEYEDEFSHLIWSADLGLAGTSVAAVPPYTLMARRVGPGKGGADAWAWEYRGRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTFKAKVYDYCDPYW 1638
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.720e-31 Identity = 78/173 (45.09%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEP-LVTSPLYTLEDRRVVIGE---ETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYH-PQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYYQCQI 782 RTV A++M+ F+ RP LR F DE+S VW DL L E +V +PLYTL DRR G T+W+W YRG Y DG S W+TE+ DSF+PLQLDVFHALWE YH PRP + T+ R AL L V K+L D++ L R +V F PY++ + Sbjct: 1499 RTVVASDMKQFYSRPLDLRLPFEDEFSHFVWGPDLGLVEDSVVAAPLYTLVDRRTTQGAGGASTAWAWEYRGKYQDGTTSSWLTEDTVKDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEF 1671
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.760e-30 Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGEET-SWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPY 767 R V AA+++ FH RP HL+ F DE+S ++WSA L L++ V + PLYTL RRV G+ SW+W YRG Y DG +S WI E EA DSF+PLQLDVFHALWE++HP P+P + R AL + V + + E +S++++ +V+ + PY Sbjct: 982 RRVVAADIKPFHRRPTHLQLPFEDEFSHVIWSASLGLTDTSVLAVPLYTLTARRVGQGKSAGSWAWEYRGRYQDGIQSSWIPEAEARDSFSPLQLDVFHALWELHHPDSEPQPPGEPARGQRKVESRERALEMFPCGTVVGRIFTNAEGQSEVFKSKVYDYCDPY 1146
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.330e-26 Identity = 69/168 (41.07%), Postives = 97/168 (57.74%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEP-LVTSPLYTLEDRRVVI--GEETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYH-PQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYY 770 RTV+A++M+ F+ RP +R F DE++ VW DL L E +V +PLYTL DRR G T+W+W Y+G Y +G S W+TE+ DSF+PLQL +FHAL E YH PRP ++++ R AL L V ++LLD + + R +V F PY+ Sbjct: 2045 RTVAASDMKPFYSRPLDVRLAFEDEFAHYVWEPDLGLVEDSVVAAPLYTLFDRRTTQAGGAPTAWAWEYKGKYQEGTPSDWLTEDTVKDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYW 2212
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.310e-25 Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSE-PLVTSPLYTLEDRRVVIGEETS--WSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQF-CPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWRQV-FHFRGPYY 770 R V+A + + +H RP+ LR F DE++ ++WSADL L++ +V PLYTL DRR V G + + W+W Y+ Y DGA S W TEEE DSF+PLQLDVFHAL+E+++ + PRPA T+ R AL + + V ++ D + ++++ F PY+ Sbjct: 1748 RKVAAPDFKPYHGRPQDLRLSFEDEFAYVMWSADLGLADISVVAVPLYTLVDRRAVRGADNAPTWTWEYQDHYQDGALSPWPTEEEVGDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYW 1915
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5JF54_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF54_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 8.900e-15 Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGEETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQ-FCPRPAASMT 629 R V A +++ +HV+P LR + DE++ L WSADL L++ V + PLYT+ DRRV D A S +TE+EA DSF+PLQLD FHAL+E YH + PRP T Sbjct: 364 RKVRAPDLKPWHVQPHDLRLPYEDEFAHLGWSADLGLADTSVVAVPLYTVLDRRV-----------------DCALSSCMTEDEAGDSFSPLQLDAFHALYEAYHGEDAAPRPIGPPT 464 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1535.3142.1 >prot_H-paniculata_contig1535.3142.1 ID=prot_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp MKCGPVLGKCIVLSCPTSASALSCGGKGRTVSAANMQLFHVRPKHLRHDFback to top mRNA from alignment at H-paniculata_contig1535:7496..8334+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1535.3142.1 ID=mRNA_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig1535:7496..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1535:7496..8334+ >mRNA_H-paniculata_contig1535.3142.1 ID=mRNA_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig1535:7496..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |