mRNA_H-paniculata_contig1535.3142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1535.3142.1
Unique NamemRNA_H-paniculata_contig1535.3142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.630e-32
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGE--ETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYY 770
            R V AA+++ FH RP HL+ ++ DE+S L+WSADL L+   V + P YTL  RRV  G+    +W+W YRG Y DGA+S WITE+EA DSF+PLQLDVFHALWE++HP    RP    T+       R  AL +      V +  +D E  S+ ++ +V+ +  PY+
Sbjct: 1472 RRVVAADVKPFHQRPAHLQLEYEDEFSHLIWSADLGLAGTSVAAVPPYTLMARRVGPGKGGADAWAWEYRGRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTFKAKVYDYCDPYW 1638          
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.720e-31
Identity = 78/173 (45.09%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEP-LVTSPLYTLEDRRVVIGE---ETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYH-PQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYYQCQI 782
            RTV A++M+ F+ RP  LR  F DE+S  VW  DL L E  +V +PLYTL DRR   G     T+W+W YRG Y DG  S W+TE+   DSF+PLQLDVFHALWE YH     PRP  + T+       R  AL    L   V K+L D++    L R +V  F  PY++ + 
Sbjct: 1499 RTVVASDMKQFYSRPLDLRLPFEDEFSHFVWGPDLGLVEDSVVAAPLYTLVDRRTTQGAGGASTAWAWEYRGKYQDGTTSSWLTEDTVKDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEF 1671          
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.760e-30
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGEET-SWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPY 767
            R V AA+++ FH RP HL+  F DE+S ++WSA L L++  V + PLYTL  RRV  G+   SW+W YRG Y DG +S WI E EA DSF+PLQLDVFHALWE++HP   P+P     +       R  AL +      V +   + E +S++++ +V+ +  PY
Sbjct:  982 RRVVAADIKPFHRRPTHLQLPFEDEFSHVIWSASLGLTDTSVLAVPLYTLTARRVGQGKSAGSWAWEYRGRYQDGIQSSWIPEAEARDSFSPLQLDVFHALWELHHPDSEPQPPGEPARGQRKVESRERALEMFPCGTVVGRIFTNAEGQSEVFKSKVYDYCDPY 1146          
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.330e-26
Identity = 69/168 (41.07%), Postives = 97/168 (57.74%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEP-LVTSPLYTLEDRRVVI--GEETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYH-PQFCPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWR-QVFHFRGPYY 770
            RTV+A++M+ F+ RP  +R  F DE++  VW  DL L E  +V +PLYTL DRR     G  T+W+W Y+G Y +G  S W+TE+   DSF+PLQL +FHAL E YH     PRP  ++++       R  AL    L   V ++LLD +    + R +V  F  PY+
Sbjct: 2045 RTVAASDMKPFYSRPLDVRLAFEDEFAHYVWEPDLGLVEDSVVAAPLYTLFDRRTTQAGGAPTAWAWEYKGKYQEGTPSDWLTEDTVKDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYW 2212          
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.310e-25
Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSE-PLVTSPLYTLEDRRVVIGEETS--WSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQF-CPRPAASMTKRNETN*PRRGALAVDSLR*SVHKKLLDREAESQLWRQV-FHFRGPYY 770
            R V+A + + +H RP+ LR  F DE++ ++WSADL L++  +V  PLYTL DRR V G + +  W+W Y+  Y DGA S W TEEE  DSF+PLQLDVFHAL+E+++ +   PRPA   T+       R  AL +  +   V ++  D +   ++++   F    PY+
Sbjct: 1748 RKVAAPDFKPYHGRPQDLRLSFEDEFAYVMWSADLGLADISVVAVPLYTLVDRRAVRGADNAPTWTWEYQDHYQDGALSPWPTEEEVGDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYW 1915          
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Match: A0A6H5JF54_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF54_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.900e-15
Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  282 RTVSAANMQLFHVRPKHLRHDFPDEYSQLVWSADLRLSEPLVTS-PLYTLEDRRVVIGEETSWSWVYRGLYHDGAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQ-FCPRPAASMT 629
            R V A +++ +HV+P  LR  + DE++ L WSADL L++  V + PLYT+ DRRV                 D A S  +TE+EA DSF+PLQLD FHAL+E YH +   PRP    T
Sbjct:  364 RKVRAPDLKPWHVQPHDLRLPYEDEFAHLGWSADLGLADTSVVAVPLYTVLDRRV-----------------DCALSSCMTEDEAGDSFSPLQLDAFHALYEAYHGEDAAPRPIGPPT 464          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1535.3142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KNQ8_9PHAE1.630e-3244.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNP4_9PHAE4.720e-3145.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K948_9PHAE2.760e-3043.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3V4_9PHAE5.330e-2641.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ3_9PHAE1.310e-2540.48RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JF54_9PHAE8.900e-1544.07Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1535contigH-paniculata_contig1535:7496..8334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size839
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1535.3142.1prot_H-paniculata_contig1535.3142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1535 7693..8145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.7140467-UTR-H-paniculata_contig1535:7495..76921622929229.7140467-UTR-H-paniculata_contig1535:7495..7692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1535 7496..7692 +
1691480779.2895594-UTR-H-paniculata_contig1535:7495..76921691480779.2895594-UTR-H-paniculata_contig1535:7495..7692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1535 7496..7692 +
1622929229.7717717-UTR-H-paniculata_contig1535:8145..83341622929229.7717717-UTR-H-paniculata_contig1535:8145..8334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1535 8146..8334 +
1691480779.3059945-UTR-H-paniculata_contig1535:8145..83341691480779.3059945-UTR-H-paniculata_contig1535:8145..8334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1535 8146..8334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.7582662-CDS-H-paniculata_contig1535:7692..81451622929229.7582662-CDS-H-paniculata_contig1535:7692..8145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1535 7693..8145 +
1691480779.298012-CDS-H-paniculata_contig1535:7692..81451691480779.298012-CDS-H-paniculata_contig1535:7692..8145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1535 7693..8145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1535.3142.1

>prot_H-paniculata_contig1535.3142.1 ID=prot_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MKCGPVLGKCIVLSCPTSASALSCGGKGRTVSAANMQLFHVRPKHLRHDF
PDEYSQLVWSADLRLSEPLVTSPLYTLEDRRVVIGEETSWSWVYRGLYHD
GAKSHWITEEEAMDSFTPLQLDVFHALWEVYHPQFCPRPAASMTKRNETN
*
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mRNA from alignment at H-paniculata_contig1535:7496..8334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1535.3142.1 ID=mRNA_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig1535:7496..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGAGGCAGTGGACCCCAGGCCTCAGCCCTGCGACCCATCACCGACG TCACTAGGGCTACCTTGCTCGACATCCCTCGGATTATCCAGTTGCAGAAG CTATCCCCCGGCGCCAAGGCCCAAGTGGGAGATTTGATGCTGGTAAAAGA GGCGGACAGTTCGATCGCTGAGGAAGGCATCCTTAATAAACTTGTACATG AAATGTGGACCGGTCCTTGGGAAGTGCATCGTATTGTCGTGCCCAACCTC AGCTTCCGCGTTATCATGCGGTGGCAAAGGACGGACGGTGTCAGCCGCTA ACATGCAGCTCTTCCACGTGCGGCCAAAGCATCTGCGGCACGATTTTCCG GACGAGTATTCACAGCTGGTATGGAGCGCGGACTTGCGGTTGTCGGAGCC CTTGGTAACATCCCCATTGTATACTCTGGAGGACCGGAGAGTCGTGATCG GAGAGGAAACTTCCTGGAGCTGGGTATATCGTGGTCTGTACCACGATGGA GCCAAGTCCCATTGGATCACTGAGGAGGAGGCGATGGATAGCTTCACCCC ATTACAACTGGACGTTTTCCACGCGCTATGGGAAGTTTACCACCCTCAGT TTTGCCCGCGGCCAGCCGCGTCTATGACGAAGCGGAACGAGACAAATTAG CCCAGGAGAGGAGCCCTTGCGGTCGATTCCTTGAGGTAGTCAGTGCACAA GAAATTATTGGACCGCGAAGCTGAGTCACAATTATGGAGGCAGGTTTTCC ATTTCCGTGGTCCGTATTATCAGTGTCAGATATGCAGAAGGTGATTAAGA GGAAGTGAACAAACTCCAGCTCGCCAAATGGAGCGTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1535:7496..8334+

>mRNA_H-paniculata_contig1535.3142.1 ID=mRNA_H-paniculata_contig1535.3142.1|Name=mRNA_H-paniculata_contig1535.3142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig1535:7496..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGTGGACCGGTCCTTGGGAAGTGCATCGTATTGTCGTGCCCAAC
CTCAGCTTCCGCGTTATCATGCGGTGGCAAAGGACGGACGGTGTCAGCCG
CTAACATGCAGCTCTTCCACGTGCGGCCAAAGCATCTGCGGCACGATTTT
CCGGACGAGTATTCACAGCTGGTATGGAGCGCGGACTTGCGGTTGTCGGA
GCCCTTGGTAACATCCCCATTGTATACTCTGGAGGACCGGAGAGTCGTGA
TCGGAGAGGAAACTTCCTGGAGCTGGGTATATCGTGGTCTGTACCACGAT
GGAGCCAAGTCCCATTGGATCACTGAGGAGGAGGCGATGGATAGCTTCAC
CCCATTACAACTGGACGTTTTCCACGCGCTATGGGAAGTTTACCACCCTC
AGTTTTGCCCGCGGCCAGCCGCGTCTATGACGAAGCGGAACGAGACAAAT
TAGATGAAATGTGGACCGGTCCTTGGGAAGTGCATCGTATTGTCGTGCCC
AACCTCAGCTTCCGCGTTATCATGCGGTGGCAAAGGACGGACGGTGTCAG
CCGCTAACATGCAGCTCTTCCACGTGCGGCCAAAGCATCTGCGGCACGAT
TTTCCGGACGAGTATTCACAGCTGGTATGGAGCGCGGACTTGCGGTTGTC
GGAGCCCTTGGTAACATCCCCATTGTATACTCTGGAGGACCGGAGAGTCG
TGATCGGAGAGGAAACTTCCTGGAGCTGGGTATATCGTGGTCTGTACCAC
GATGGAGCCAAGTCCCATTGGATCACTGAGGAGGAGGCGATGGATAGCTT
CACCCCATTACAACTGGACGTTTTCCACGCGCTATGGGAAGTTTACCACC
CTCAGTTTTGCCCGCGGCCAGCCGCGTCTATGACGAAGCGGAACGAGACA
AATTAG
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