mRNA_H-paniculata_contig15329.3125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15329.3125.1
Unique NamemRNA_H-paniculata_contig15329.3125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 82.4 bits (202), Expect = 4.300e-16
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    7 ELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHR-GKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPV 318
            +  RS  DPC+Y  ++   E +I + +Y DD+++A     +V++ K  LSR F  KDLG  SR+LGI++  +R  GT+ +SQ GY+++V++ ++ GE + V TP+
Sbjct: 1009 KFTRSGHDPCVYV-KEVGDEEFIYLLLYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPI 1112          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0WR72_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WR72_9BILA)

HSP 1 Score: 80.5 bits (197), Expect = 1.830e-15
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + ET++ V VY DDL+I + +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:  179 LNRLKNEPCIYFLR--KNETFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQERYIEELLHRFRMSDCKGVKTPLD 281          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0W0C4_9BILA (26S protease regulatory subunit 8 n=2 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W0C4_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 3.760e-15
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + ET++ V VY DDL+I + +    +E K  L  RFR +DLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:  374 LNRLKNEPCIYFLR--KNETFLAVGVYVDDLLILSNNESSKNELKMALCERFRMEDLGRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLYRFRMSDCKGVKTPLD 476          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1NVJ2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1NVJ2_9BILA)

HSP 1 Score: 77.0 bits (188), Expect = 5.100e-15
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + E ++ V VY DDL ++ +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:   44 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNESSKNELKMALCERFKMKDLGRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 144          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1FL71_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FL71_TRIPS)

HSP 1 Score: 79.0 bits (193), Expect = 6.920e-15
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + +T++ V VY DDL+I + +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:  548 LNRLKNEPCIYFLR--KNKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 650          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1APU2_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1APU2_TRISP)

HSP 1 Score: 79.0 bits (193), Expect = 7.030e-15
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + +T++ V VY DDL+I + +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:  888 LNRLKNEPCIYFLR--KNKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 990          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V0UXA3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0UXA3_9BILA)

HSP 1 Score: 78.2 bits (191), Expect = 8.330e-15
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVI-AGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + E ++ V VY DDL+I + +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:   44 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQERYIEELLHRFRMSDCKGVKTPLD 146          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1C4L5_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1C4L5_TRIBR)

HSP 1 Score: 74.7 bits (182), Expect = 3.930e-14
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + E ++ V VY DDL ++ +    +E K  L  RF+ KDL      LGI ++ D  NGT+SI Q  YI E+L  +   + +GV TP++
Sbjct:  114 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNESSKNELKMALCERFKMKDLNRAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLD 214          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 75.9 bits (185), Expect = 8.500e-14
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    4 IELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPV 318
            I   RS  D C Y      G    L+    D LV A ++  + + K  LS+RF  KDLG   R+LG+E++ +R   T+ +SQ GY+ ++L+ Y+  E + V+TP+
Sbjct:  985 IGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPL 1089          
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Match: A0A0V1AJ61_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1AJ61_TRIBR)

HSP 1 Score: 71.6 bits (174), Expect = 9.980e-14
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   10 LQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNLSRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYRGVLTPVE 321
            L R   +PC+YF R  + E ++ V VY DDL ++ +    +E K  L  RF+ KDLG     LGI ++ D  NGT+SI Q   I E+L  +   + +GV TP++
Sbjct:   11 LNRLKNEPCIYFLR--KNEIFLAVGVYVDDL-LSNNVSLKNELKMALCERFKMKDLGRAHWCLGIRIVQDVENGTLSIDQEQCIEEMLHRFRMSDCKGVKTPLD 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15329.3125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2J0E6_9BRAS4.300e-1638.10Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
A0A0V0WR72_9BILA1.830e-1540.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0W0C4_9BILA3.760e-1540.9526S protease regulatory subunit 8 n=2 Tax=Trichine... [more]
A0A0V1NVJ2_9BILA5.100e-1539.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1FL71_TRIPS6.920e-1540.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1APU2_TRISP7.030e-1540.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0UXA3_9BILA8.330e-1540.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1C4L5_TRIBR3.930e-1438.46Retrovirus-related Pol polyprotein from transposon... [more]
Q9SJT2_ARATH8.500e-1435.24Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A0V1AJ61_TRIBR9.980e-1438.46Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15329contigH-paniculata_contig15329:5715..6035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.8539212-CDS-H-paniculata_contig15329:5714..60351622929227.8539212-CDS-H-paniculata_contig15329:5714..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15329 5715..6035 -
1691480778.4064078-CDS-H-paniculata_contig15329:5714..60351691480778.4064078-CDS-H-paniculata_contig15329:5714..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15329 5715..6035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15329.3125.1prot_H-paniculata_contig15329.3125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15329 5715..6035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15329.3125.1

>prot_H-paniculata_contig15329.3125.1 ID=prot_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
GIELQRSSTDPCLYFSRDERGETYILVAVYGDDLVIAGHRGKVDEFKHNL
SRRFRTKDLGFLSRVLGIEVLGDRPNGTISISQGGYIREVLKIYSFGEYR
GVLTPVE
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mRNA from alignment at H-paniculata_contig15329:5715..6035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15329.3125.1 ID=mRNA_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig15329:5715..6035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATAGAACTCCAGCGTTCCAGTACCGACCCATGCTTATACTTCTCTCG CGACGAAAGGGGGGAGACATACATTCTCGTGGCCGTCTATGGCGACGACC TAGTCATCGCTGGACATCGTGGGAAAGTAGACGAGTTCAAGCACAACCTA AGTCGGCGTTTTAGGACGAAAGACTTGGGCTTCCTCTCGCGCGTGTTGGG AATAGAAGTACTAGGTGACCGCCCCAATGGTACCATATCAATATCCCAAG GTGGCTACATACGCGAGGTACTGAAAATATACAGTTTTGGCGAGTATCGA GGCGTGCTCACCCCTGTAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15329:5715..6035-

>mRNA_H-paniculata_contig15329.3125.1 ID=mRNA_H-paniculata_contig15329.3125.1|Name=mRNA_H-paniculata_contig15329.3125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig15329:5715..6035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATAGAACTCCAGCGTTCCAGTACCGACCCATGCTTATACTTCTCTCG
CGACGAAAGGGGGGAGACATACATTCTCGTGGCCGTCTATGGCGACGACC
TAGTCATCGCTGGACATCGTGGGAAAGTAGACGAGTTCAAGCACAACCTA
AGTCGGCGTTTTAGGACGAAAGACTTGGGCTTCCTCTCGCGCGTGTTGGG
AATAGAAGTACTAGGTGACCGCCCCAATGGTACCATATCAATATCCCAAG
GTGGCTACATACGCGAGGTACTGAAAATATACAGTTTTGGCGAGTATCGA
GGCGTGCTCACCCCTGTAGAGGGGATAGAACTCCAGCGTTCCAGTACCGA
CCCATGCTTATACTTCTCTCGCGACGAAAGGGGGGAGACATACATTCTCG
TGGCCGTCTATGGCGACGACCTAGTCATCGCTGGACATCGTGGGAAAGTA
GACGAGTTCAAGCACAACCTAAGTCGGCGTTTTAGGACGAAAGACTTGGG
CTTCCTCTCGCGCGTGTTGGGAATAGAAGTACTAGGTGACCGCCCCAATG
GTACCATATCAATATCCCAAGGTGGCTACATACGCGAGGTACTGAAAATA
TACAGTTTTGGCGAGTATCGAGGCGTGCTCACCCCTGTAGAG
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