mRNA_H-paniculata_contig15295.3111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15295.3111.1
Unique NamemRNA_H-paniculata_contig15295.3111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 3.480e-124
Identity = 211/265 (79.62%), Postives = 230/265 (86.79%), Query Frame = 1 
Query:  178 GHLRS-ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGR--------GHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQ---MSLLLNLERPQSAADYWEIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVLPQA 936
            G++ S ECLV+VNTLEAC  FA  LRE LERDA AAFGG         GHD ERV+SCLQGLG+T ALF RAASDCLEEVLNRLR V+RTV+SSHLGEKSAVSYQLSENQYA NEAEDP+AHALVEYLRLLLEPYRPP GLSESLFLELLTLVAGYLAKR+E+ALK+R FTQLG LQLDKDLRC+M FFTQQAGRGAREPF+RLAQ    MSLLLNLERPQ A DYWE GSPLQAQLTA+EVV+VL+QREDF REDL+ LVLP++
Sbjct:  631 GNMNSNECLVYVNTLEACSTFAVRLREMLERDASAAFGGXXXXXXXXAGHDAERVMSCLQGLGSTRALFTRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPYAHALVEYLRLLLEPYRPPGGLSESLFLELLTLVAGYLAKRMEIALKKRLFTQLGGLQLDKDLRCVMGFFTQQAGRGAREPFSRLAQASQGMSLLLNLERPQDAMDYWEPGSPLQAQLTANEVVSVLQQREDFAREDLASLVLPES 895
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BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.050e-37
Identity = 99/247 (40.08%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:  187 RSECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYWEIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            R  CLV++N LEAC + AA L   L R+    F   G   + +++CL  L      F + +   L    N        ++++    ++ VSY+L+E QYA NEA DP+A  L   L  LL PY PP GLS + F  LL L     A+R+E A +R+ F+QLG LQLDKD+R + +   ++ G   R PFARL QQ++LLL+L+    AAD+W  G  L+  L A EV  VL  REDF  E ++ L L
Sbjct:  281 RGACLVYLNDLEACGQCAARLGAELVREVPETFQ-EGRGAQLLLACLGELSGAADAFDQRSQRSLRHPCNT------DLVTTQPRARAQVSYKLTEAQYAVNEASDPWALELATGLLSLLRPYEPPTGLSAAAFARLLALACECAAQRVEAAARRKRFSQLGGLQLDKDVRALAAAAAERGGPALRAPFARL-QQIALLLSLDDVVDAADFWHGGGALRQHLAAGEVKEVLALREDFAPESVAELEL 519
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BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: UPI001FB14573 (conserved oligomeric Golgi complex subunit 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14573)

HSP 1 Score: 130 bits (328), Expect = 7.250e-28
Identity = 87/258 (33.72%), Postives = 142/258 (55.04%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  E    +N ++   ++A  L++ +E      F   G D ERV SCL  LG     F +A +  +E+++  + P VR ++ +     + +SY+LSE +YA NE  DP+   L+  +   +   +P   ++   +  L+ LV  ++ KRLE+ + ++ F+QLG LQLD+D+R ++SFF+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  +V  VL  R DF  E ++ L L
Sbjct:  501 FLGGVGVQKTGTEISAALNNIDVSSEYALKLKQEIEEQCAEVFPAPG-DRERVKSCLSELGEMNNSFKKALNAGVEQLVASVTPRVRPLLDN----VATISYELSEAEYADNEVNDPWVQRLLHAVETNVAWLQPSMTINN--YDSLIHLVLDFIVKRLEVIMMQKRFSQLGGLQLDRDIRALVSFFSSMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPADVRRVLGLRIDFKPEAIAALKL 750
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BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: A0A2J6KJ81_LACSA (Conserved oligomeric Golgi complex subunit 4 n=8 Tax=Asteraceae TaxID=4210 RepID=A0A2J6KJ81_LACSA)

HSP 1 Score: 128 bits (321), Expect = 5.110e-27
Identity = 94/265 (35.47%), Postives = 137/265 (51.70%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEE----VLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHAL---VEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  +    +N ++   ++A  LR  +E      F   G D ER+ SCL  LG     F +  +  LE     V +R+RPV+ TV        + VSY+LSE++YA NE  DP+   L   VE     L+P    +     + L     V  ++ KRLEL + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E ++ L L
Sbjct:  488 FLGGVGVQKTGIDISTALNNMDVSSEYALKLRHEIEEQCAEVFPTPG-DRERIKSCLSELGEMSNGFKKTLNSSLEHLVGTVTHRIRPVLDTV--------ATVSYELSESEYAENEVNDPWVQRLLHTVETNTSWLQPLMTANNYDSFVHL-----VIDFIVKRLELIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 737
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BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: B9GRR3_POPTR (Conserved oligomeric Golgi complex subunit 4 n=8 Tax=Saliceae TaxID=238069 RepID=B9GRR3_POPTR)

HSP 1 Score: 127 bits (318), Expect = 1.280e-26
Identity = 86/258 (33.33%), Postives = 140/258 (54.26%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  E    +N ++   ++   L+  +E     AF     D ERV SCL  LG   + F +A +  +E+++  + P +R V+ S     + +SY+LSE +YA NE  DP+   L+  +   +   +P   ++ + +   + LV  ++ KRLE+ + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E ++ L L
Sbjct:  514 FLGGVGVQKTGTEFATALNNMDVSGEYVLKLKHEIEEQCAEAFPATA-DRERVKSCLSELGDVSSTFKQALNAGMEQLVATVTPRIRPVLDS----VATISYELSEAEYADNEVNDPWVQRLLHSVETNVSWLQPL--MTANNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSHFSSMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAALKL 763
[Close]
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: A0A1U8AKK7_NELNU (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AKK7_NELNU)

HSP 1 Score: 125 bits (315), Expect = 2.850e-26
Identity = 88/261 (33.72%), Postives = 135/261 (51.72%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHAL---VEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  E    +N ++   ++   LR  +E      F     D ERV SCL  LG     F +  +  +E++++ + P +R V+ S     + +SY+LSE  YA NE  DP+   L   VE     L+P   P+     + L     +  ++ KRLE+ + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E ++ L L
Sbjct:  494 FLGGVGAQKTATEITTALNNMDVSAEYVLKLRHEIEEQCVEVFPAPA-DRERVKSCLSELGEMSNSFKQTLNVGMEQLVSTVTPRIRPVLDS----VATISYELSEADYAENEVNDPWVQKLLHAVETNAAWLQPLMTPNNYDSFVHL-----IIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAALKL 743
[Close]
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: B9RNK4_RICCO (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RNK4_RICCO)

HSP 1 Score: 125 bits (314), Expect = 3.820e-26
Identity = 86/258 (33.33%), Postives = 137/258 (53.10%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  +S  E    +N ++   ++   L+  +E      F     D E+V SCL  LG     F +A +  +E+++  +   +R V+ S     + +SY+LSE +YA NE  DP+   L+  +   +   +P   ++ + +   + LV  Y+ KRLE+ + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E +S L L
Sbjct:  497 FLGGVGVQKSGTEIATALNNIDVSSEYVQKLKHEIEEQCAQVFPASA-DREKVKSCLSELGDMSNTFKQALNAGMEQLVATVTQRIRQVLDS----VTTISYELSEAEYADNEVNDPWVQRLLHAVETNVSWLQPV--MTANNYDSFVHLVIDYIVKRLEVIMMQKRFSQLGGLQLDRDIRALVSHFSSMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAISALKL 746
[Close]
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: A0A1J6I8W7_NICAT (Conserved oligomeric Golgi complex subunit 4 n=7 Tax=Solanaceae TaxID=4070 RepID=A0A1J6I8W7_NICAT)

HSP 1 Score: 125 bits (314), Expect = 3.830e-26
Identity = 82/247 (33.20%), Postives = 135/247 (54.66%), Query Frame = 1 
Query:  190 SECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            +E    +N ++   ++A  LR  +E      F     D ERV SCL  L      F +A +  LE+++  + P +R V+ +     + +SY+LSE++YA NE  DP+   L+  +   +   +P   ++ + +  L+ LV  ++ KRLE+ + ++ F+QLG LQLD+D+R ++S+F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E ++ L L
Sbjct:  509 TEIATALNNMDVSSEYALKLRHEIEEQCAEVFPAPA-DRERVKSCLSELNEMSNGFKKALNIGLEQLVATVTPRIRPVLDT----VATISYELSESEYADNEVNDPWVQRLLHAVESNVAWLQPL--MTANNYDSLVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSYFSNMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKSEAIAALKL 747
[Close]
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: UPI001CB981B5 (conserved oligomeric Golgi complex subunit 4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB981B5)

HSP 1 Score: 124 bits (312), Expect = 6.640e-26
Identity = 93/267 (34.83%), Postives = 138/267 (51.69%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEE----VLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHALVEYLRLLLEPYRPPDGLSESLFLE-----LLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  +    +N ++   ++A  LR  +E +    F     D ER+ SCL  LG     F +A    LE+    V +R+RPV+ +V        + VSY+LSE +YA NE  DP       +++ LL       G  +SL         + LV  ++ KRLEL + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E ++ L L
Sbjct:  492 FLGGVGVQKTGIDIATALNNMDVSSEYALKLRHEIEEECAEVFPAPA-DRERIKSCLSELGEMSNAFKKALVAGLEQLVGTVTHRIRPVLDSV--------ATVSYELSEAEYAENEVNDP-------WVQRLLHAVETNSGWLQSLMTSNNYDSFVHLVIDFIVKRLELIMMQKRFSQLGGLQLDRDVRVLVSHFSGMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 741
[Close]
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Match: UPI000901AD67 (conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901AD67)

HSP 1 Score: 124 bits (310), Expect = 1.190e-25
Identity = 89/261 (34.10%), Postives = 135/261 (51.72%), Query Frame = 1 
Query:  163 FLGGNGHLRS--ECLVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATGALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEAEDPFAHAL---VEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALKRRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLERPQSAADYW-EIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVL 927
            FLGG G  ++  E    +N ++   ++   LR  +E     AF    H  ERV SC+  L      F +A +  +E+++  + P +R V+ S     + +SY+LSE +YA NE  DP+   L   VE     L+P    +     + L     V  ++ KRLE+ + ++ F+QLG LQLD+D+R ++S F+    R  R+ FARL  QM+ +LNLE+     D+W E   P+  +LT  EV  VL  R DF  E +S L L
Sbjct:  498 FLGGVGVQKTGTEIATALNNMDVSSEYVLKLRHEIEEQCTEAFPAPAH-RERVKSCVSELNEMSNSFKKALNVGMEQLVATVTPRIRPVLDS----VATISYELSETEYADNEVNDPWVQRLLHGVESNVAWLQPLMTANNYDTFIHL-----VIDFIVKRLEVIMLQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLT-QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAISALKL 747
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15295.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE3.480e-12479.62Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836C9B0_9STRA4.050e-3740.08Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
UPI001FB145737.250e-2833.72conserved oligomeric Golgi complex subunit 4-like ... [more]
A0A2J6KJ81_LACSA5.110e-2735.47Conserved oligomeric Golgi complex subunit 4 n=8 T... [more]
B9GRR3_POPTR1.280e-2633.33Conserved oligomeric Golgi complex subunit 4 n=8 T... [more]
A0A1U8AKK7_NELNU2.850e-2633.72Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
B9RNK4_RICCO3.820e-2633.33Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A1J6I8W7_NICAT3.830e-2633.20Conserved oligomeric Golgi complex subunit 4 n=7 T... [more]
UPI001CB981B56.640e-2634.83conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
UPI000901AD671.190e-2534.10conserved oligomeric Golgi complex subunit 4 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15295contigH-paniculata_contig15295:466..5672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.8
Seed ortholog evalue3.4e-110
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
Ec32 ortholog descriptionConserved oligomeric Golgi complex, subunit 4
Ec32 orthologEc-06_003700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons6
Model size2097
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15295.3111.1prot_H-paniculata_contig15295.3111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15295 1624..5624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.91748-UTR-H-paniculata_contig15295:465..16231622929225.91748-UTR-H-paniculata_contig15295:465..1623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15295 466..1623 -
1691480777.4627216-UTR-H-paniculata_contig15295:465..16231691480777.4627216-UTR-H-paniculata_contig15295:465..1623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15295 466..1623 -
1622929226.014073-UTR-H-paniculata_contig15295:5624..56721622929226.014073-UTR-H-paniculata_contig15295:5624..5672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15295 5625..5672 -
1691480777.5388253-UTR-H-paniculata_contig15295:5624..56721691480777.5388253-UTR-H-paniculata_contig15295:5624..5672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15295 5625..5672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.9361403-CDS-H-paniculata_contig15295:1623..16981622929225.9361403-CDS-H-paniculata_contig15295:1623..1698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 1624..1698 -
1691480777.4748878-CDS-H-paniculata_contig15295:1623..16981691480777.4748878-CDS-H-paniculata_contig15295:1623..1698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 1624..1698 -
1622929225.9501193-CDS-H-paniculata_contig15295:2169..22651622929225.9501193-CDS-H-paniculata_contig15295:2169..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 2170..2265 -
1691480777.4834504-CDS-H-paniculata_contig15295:2169..22651691480777.4834504-CDS-H-paniculata_contig15295:2169..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 2170..2265 -
1622929225.9622607-CDS-H-paniculata_contig15295:2627..27141622929225.9622607-CDS-H-paniculata_contig15295:2627..2714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 2628..2714 -
1691480777.498203-CDS-H-paniculata_contig15295:2627..27141691480777.498203-CDS-H-paniculata_contig15295:2627..2714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 2628..2714 -
1622929225.9727132-CDS-H-paniculata_contig15295:4354..44991622929225.9727132-CDS-H-paniculata_contig15295:4354..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 4355..4499 -
1691480777.5090227-CDS-H-paniculata_contig15295:4354..44991691480777.5090227-CDS-H-paniculata_contig15295:4354..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 4355..4499 -
1622929225.9840016-CDS-H-paniculata_contig15295:4811..49601622929225.9840016-CDS-H-paniculata_contig15295:4811..4960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 4812..4960 -
1691480777.5195632-CDS-H-paniculata_contig15295:4811..49601691480777.5195632-CDS-H-paniculata_contig15295:4811..4960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 4812..4960 -
1622929226.0003762-CDS-H-paniculata_contig15295:5285..56241622929226.0003762-CDS-H-paniculata_contig15295:5285..5624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 5286..5624 -
1691480777.5293496-CDS-H-paniculata_contig15295:5285..56241691480777.5293496-CDS-H-paniculata_contig15295:5285..5624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15295 5286..5624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15295.3111.1

>prot_H-paniculata_contig15295.3111.1 ID=prot_H-paniculata_contig15295.3111.1|Name=mRNA_H-paniculata_contig15295.3111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MVGGVGVGGGAGMSGSTPGGGGMGGAGVGGGPGGVNGDFLGGNGHLRSEC
LVFVNTLEACCKFAAHLRESLERDAGAAFGGRGHDEERVVSCLQGLGATG
ALFARAASDCLEEVLNRLRPVVRTVISSHLGEKSAVSYQLSENQYATNEA
EDPFAHALVEYLRLLLEPYRPPDGLSESLFLELLTLVAGYLAKRLELALK
RRFFTQLGALQLDKDLRCIMSFFTQQAGRGAREPFARLAQQMSLLLNLER
PQSAADYWEIGSPLQAQLTADEVVAVLRQREDFTREDLSLLVLPQA*
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mRNA from alignment at H-paniculata_contig15295:466..5672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15295.3111.1 ID=mRNA_H-paniculata_contig15295.3111.1|Name=mRNA_H-paniculata_contig15295.3111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5207bp|location=Sequence derived from alignment at H-paniculata_contig15295:466..5672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACCGGTGCGGAGGCTGTAGCAGCTACGGGACTCCCCGCCACAGGCAT
GGTTGGAGGAGTAGGCGTCGGCGGAGGGGCGGGGATGTCGGGCAGCACAC
CTGGGGGGGGTGGTATGGGTGGAGCGGGGGTGGGGGGTGGCCCTGGGGGA
GTTAACGGTGACTTTTTGGGTGGGAATGGACACTTGCGATCAGAGTGTTT
GGTGTTCGTCAACACGTTGGAGGCGTGTTGTAAATTCGCCGCTCATCTGA
GGGAGTCATTGGAGAGGGATGCTGGAGCGGCGTTTGGCGGTAGGGGTCAC
GACGAGGAGCGAGTGGTGTCGTGTCTGCAGGGGTTGGGGGCGACGGGGGC
GCTGTTCGCTCGAGCCGCGAGCGACTGTTTGGAGGAGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCCTTTGTTTATCTTTTCAGGAAGTAAAAGAAATA
CCGTATACTCTTGTAATTTGTTTGAAGTTTCCCCTGGGGGTGTTGGCACA
ATGTTTGAAGAAGATTCAGAAAGTGAGGTGCGAAAAGATTTTGGCACACT
TGCGATTTCTTGTCTTGTAGCATATACCAAGCTGTAATGTATTGCGCTGT
TTGTTGCTTGTGTGTGCCTTGCTGCTTGTTTATTGACATTATTTCATCAT
TGTTATTTCTCGACGTGTTTATGTGGTGCTCATGTACCCCAATACCGCCG
GCCCCTCGGCAGGTGTTGAACAGGCTAAGACCAGTGGTGAGAACGGTTAT
ATCGTCTCACTTGGGCGAGAAGTCGGCGGTTTCGTACCAGCTGAGTGAGA
ATCAGTACGCGACGAACGAAGCCGAGGACCCTTTCGCGCACGCCCTAGTA
GAGTACCTGAGGTAAGTACGTCGTACACCGTAGTACCTACCCCTCGAGCA
GGGGGGGGATGGTACTTAAAATTTCGTAAATTTCTAGTTTGTGGAGCCCA
TATTGCGTAGCTGACATGCCACGGTACTCCGTTCTCTCTTGTGTTGAGTC
AATCAACGAGATGGGAACGTGTCAGTAATGGTCTTGACTTCCATTTTTAA
GGGTACTACATTTCAGTTTCAAGCATCTAAACGATAGCAATGAAGAGCAG
GTCTTGCAATGTTGGTGGTTTTCCTCACCCCCTTTTTTTTTTTTTTTTTT
CTCGCCACCAACGAAAAAAACAGGCTGCTGCTCGAGCCGTACCGCCCACC
CGACGGTCTGTCCGAGTCCCTGTTCCTTGAGCTCTTGACTCTCGTGGCCG
GCTACCTGGCGAAGCGCCTAGAACTGGCGCTGAAGAGGCGTTTCTTCACT
CAGCTGGGAGCTCTCCAGGTGCAAAGAAACGCCAAGACTTTTTGTTTTTT
GTCCGTTTTTTTCTCTTTTTTTTGCCTCAGGCTAAGTTATCATTTCTCCA
ATTCCCGATGGTCAAGGGGTACAGACGGTACCAGTACAAACCATCTCACA
TATAGCGTATTGTTGCAGCACTACAGCCAGTGGCCGGTGTTTCGCGTCCT
CCAACATTCGAGCGGTCACTTTCCACCGGGTATGTGTTGATCTATTTGTG
GGCTTCCAAGTAGCTCACTAGCAATAGCCAGACCAATTGATGGGGAATAA
GAAGGGAAGGGTACAGGGACGAAAAACAACTTGGAAATACTGGATATGCT
CGCACGTGATTCCTCGATGTGTGAGTTGCTACAGTATATATATATGAAAC
GCTGAAAAGAGTGTATCATGTTGGGTAACCGCTGCTATGCAAGAGGTGAA
CGTCGTACCAAGATCCATCGAAGACAGGTACCCGCTTTTTCATTGAGTGA
TTCTTCACACAATACTTTGTCGACATTGTCCGCACACACATTTAGTACAC
ATTATTTATTTTGTTTTTTTTACCTGCTATGCCATAATCGAGAACCGGAG
TAAATCTGCGTTTTTGTGACGCGGTCGGTCTTTACAGAGCAGTAACAGTT
TATCGCATGATATACCGTACCATATCGCACGAAGAAGCGTTGGACTCGGT
ACATGACGTCTTTTTCTCTCTGTCGAATCAGCAGTAGCGCCGTGCCAGAG
CTACTTCGACCCATATTAGAGGCACACGGGCATTACGCCAGCTCCTAGGA
GCGTTTGCTCAACTGCTTCCACCGTCGTGTCGGTGGGTAGCGTGGGGGGG
GGGGGTCATGGACCGGACGACCCGGGGCGGTGGTGAGCGGGAGGATGGAA
GAGTACGAAAGATATATCATACAAACAGTGGCAACAAATAACCACTTTAA
ACAGCTTTTTTTATCCTCTTTCCCTAAGATACGCGAGTGTAACATGCCAT
GTGCCGCCTTTCAGAGGGGGAGGTGTGGTTATGGGGGACCTCTCCTTTCT
TTCTTGCCCTCAGGTATCAACCTTTTCCTATGGCAGCCTCCTCCTCCAAC
ATAAGGGAGCACCGTCTTTCACACACAAGCTTCCCTACCGACCCTCTCGT
TGCTGGTGAAAACAGCTGTTGGTCAAATCGAGCAAACGGCTTTTCAGTAC
GTACACATCGGAAAAATGCACCAAAATACAGGGTAAACGTGGTCAAGTTG
TTTGAGCAGCCACGCTCAGGAGAGAGATCAAGCGCCAACAGTGACTAGAG
TACCCCTGTCGTAGAGCTACTCCTCACACGAACACGCTAGCGCTGGCACC
GGAGTGTTACCTCTAGTAGGACACCGACAAACGATTGCGCTACATGTGAT
GCGCAACGGCGGAAGGTTGAGCTTGGCATGCGTCTTTCCCTTCCAGAACC
ATCGCACTATTGGCTCGGAAACATACGTTTCGATTCACTCAAGGAATGCT
AGAGGCGATTCATTCACTGCAAGGTCCAATGTGCAAAGGCCAGTGTGCAA
TCCCCCCCCCCCCCCCCACCGTACCCCCCTGTACTTCCCCCAGCCTCTTT
TTTACGCACGCTATCGTTTTCCCGTTGTCTTCGCGATGTGATGTTGTATT
TTGTACAGTTAGACAAAGACCTTCGGTGTATCATGAGTTTCTTCACACAG
CAGGCAGGAAGAGGGGCGCGAGAGCCGTTTGCCAGATTGGCCCAGGTACG
TTTTGTTCAGGTGTTGAGTAGTTTTGCGAATGCGATGCAGAAGGCACAGC
TTGTAAGAAGTAGGCTCATGAGTGGTTTTGGGTCTGTTTGTGGCAACTGG
ATTTCGTTCCAAGGAAAACTGGTGGATAGGTAGTTTTCATATTGTGTTAT
ATGATTCGTTGGGTTCTCGATGAATTGCTAGCAGTCATGTCACTCTTGAT
ATTTGTACGACAATCTGTGGAGAGCCATCTTCACCGTGGGTGTGCCGCAC
TATTACATTTGCTAGTTCTCTAGCTGCCTCAACTGAGCTCTAGAACTCCA
CCCAAGTTTAAAAGGGTGTGAAGCTAACTGCGAATTTCTCCTGCTTGTGT
GTGTGAGCAGATGTCTCTCTTGCTCAACCTGGAACGACCACAAAGCGCTG
CGGATTACTGGGAAATCGGGTCGCCCCTCCAGGCGCAGCTCACGGCAGAT
GAAGTGAGAAAGTGACGGGAACAATACAACCGTTCGTTTTCCTTATTTCG
TATCAAGAAAAACCGGAGTTTGCGAAGATCAGGATAAAGCCCTCAGCGAT
CCTTCTGCACTCGGTTTTTGGGTCCTAACTGATCCGATTTGCGGGACATT
TGAATGTAAATTGTTGCACGGTCGGTTGATATATAGGCAAGCGGTTTGCA
CCACGCTGTTGGTACATCGGTGACATCATCCATGCGCGCGAGGTTGCCCT
TATCTGATCCGTCTTATTTTTGGTTTACCCCAATGTTTTGCCCATGTCAA
CTTGTTTTCTTCTCTTTAGGTGAGGGATTAAATGCCATGAGAGTTATTTT
TTCACTTGCTTGCGTATTTTCCTGCTGCAATATTGACCCTCTATCTTCCG
TTTGTTCCTACCCACGCCCTTCTCCTCCTCCCCCGTGTGTTTCTCTGCGC
GTGTGATGATGCATGCAAAAAAAGGTGGTGGCGGTGCTTCGCCAAAGAGA
GGACTTCACTCGAGAAGACCTGTCTTTGCTAGTTTTGCCACAAGCGTGAG
AAAAGACGCCGTATTAGCATGGTTCCAGAGCAACTTAAGAACTGTCACTG
AAAGCGAAAATCGTTCGGTGTATCCTGCCGGCGGCTGATACGCCCATCTC
CTGTCCTGTAAAGCTATAATGTTTTAGTTGATGAGGAAGAAAGGATAGCA
ACACAACTGCCCAATTACCGTCTGAAGCGAATTATAACCGGAAAGCACAG
TGGTCAAAGTGCCACACGTCCTTTAGGCCTGAGGATGCCCGCAAGCGGTA
CCTATCTGTGTTGTTGATGAATGTAACGACGCGTCGAAGACAATCAGTTC
GTATACTGAAGATTGCTGCTTGGTGTGGCGTTGTTTTCAGTCATACTTGG
GTGCTCAAAACATAGGGTGCCAAAGAGAGAGAAAGGGTGCTTGCAATGCG
TTGAGAAGAGTATGTGCCCCGCCCTCCCCCCCCTCCCTCCCTGCGCGCTC
CTGACTCGGGACGTTGAATATTTGAACTTGGATATGGAGATAGGTAGCGT
AATGAAGGAACCTGTGACTTCTAAAAATACGGACATGGCTTCCATGTTCA
AAGTGAAATAATGCGCCGGAGCGTCGCTATGCGCTCGTGTTGGGGGAGTG
TAAAGAGAGGGAGTGTCAACAATCAATTTTATGTGCAGTGTGCATCCCGA
TATATTCTCATGAATAGTCGAAACGCTCACAATCATTTTTTATTTAAACA
GCGGGGTATACAGCCAATCGTCAACTCCAGTATTGACAAGCGAGTGGAAC
TGCGACCCCGACCACGAGATAATATAAGGCAAGAACCGAGGCATTATATT
CGCGGCTTCGGATCGGGGGGGTTCCGAGAGCAACAGATCCGCAACGGGAT
AATAAATAAACACGCTCCACTCCCTCGTACAATGGGCCACCGTTTATGCA
GAGAGTAGTTGCTGCACATGTCCGACAAAACAGATGACAACAACCAACCA
TACCGGCGCTATTCGTCTACTGTTCTAGAGGATTCTAGAACTAGCCATCC
ATGTCGTTTTGATTCGGTCGGCGCGAGAAAGCTTTCTGGCTACTTGGTTT
AGTCCATGTTGTTTAAGTCCACCAGGAACGCTGTTCCGCTTTCGCCACGG
AGTTCTACAGCAATGAGCTGTTCCGTGCGTCGTGAGGGTGCAAAACACCG
AAAACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig15295:466..5672-

>mRNA_H-paniculata_contig15295.3111.1 ID=mRNA_H-paniculata_contig15295.3111.1|Name=mRNA_H-paniculata_contig15295.3111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig15295:466..5672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGAGGAGTAGGCGTCGGCGGAGGGGCGGGGATGTCGGGCAGCAC
ACCTGGGGGGGGTGGTATGGGTGGAGCGGGGGTGGGGGGTGGCCCTGGGG
GAGTTAACGGTGACTTTTTGGGTGGGAATGGACACTTGCGATCAGAGTGT
TTGGTGTTCGTCAACACGTTGGAGGCGTGTTGTAAATTCGCCGCTCATCT
GAGGGAGTCATTGGAGAGGGATGCTGGAGCGGCGTTTGGCGGTAGGGGTC
ACGACGAGGAGCGAGTGGTGTCGTGTCTGCAGGGGTTGGGGGCGACGGGG
GCGCTGTTCGCTCGAGCCGCGAGCGACTGTTTGGAGGAGATGGTTGGAGG
AGTAGGCGTCGGCGGAGGGGCGGGGATGTCGGGCAGCACACCTGGGGGGG
GTGGTATGGGTGGAGCGGGGGTGGGGGGTGGCCCTGGGGGAGTTAACGGT
GACTTTTTGGGTGGGAATGGACACTTGCGATCAGAGTGTTTGGTGTTCGT
CAACACGTTGGAGGCGTGTTGTAAATTCGCCGCTCATCTGAGGGAGTCAT
TGGAGAGGGATGCTGGAGCGGCGTTTGGCGGTAGGGGTCACGACGAGGAG
CGAGTGGTGTCGTGTCTGCAGGGGTTGGGGGCGACGGGGGCGCTGTTCGC
TCGAGCCGCGAGCGACTGTTTGGAGGAGGTGTTGAACAGGCTAAGACCAG
TGGTGAGAACGGTTATATCGTCTCACTTGGGCGAGAAGTCGGCGGTTTCG
TACCAGCTGAGTGAGAATCAGTACGCGACGAACGAAGCCGAGGACCCTTT
CGCGCACGCCCTAGTAGAGTACCTGAGGTGTTGAACAGGCTAAGACCAGT
GGTGAGAACGGTTATATCGTCTCACTTGGGCGAGAAGTCGGCGGTTTCGT
ACCAGCTGAGTGAGAATCAGTACGCGACGAACGAAGCCGAGGACCCTTTC
GCGCACGCCCTAGTAGAGTACCTGAGGCTGCTGCTCGAGCCGTACCGCCC
ACCCGACGGTCTGTCCGAGTCCCTGTTCCTTGAGCTCTTGACTCTCGTGG
CCGGCTACCTGGCGAAGCGCCTAGAACTGGCGCTGAAGAGGCGTTTCTTC
ACTCAGCTGGGAGCTCTCCAGGCTGCTGCTCGAGCCGTACCGCCCACCCG
ACGGTCTGTCCGAGTCCCTGTTCCTTGAGCTCTTGACTCTCGTGGCCGGC
TACCTGGCGAAGCGCCTAGAACTGGCGCTGAAGAGGCGTTTCTTCACTCA
GCTGGGAGCTCTCCAGTTAGACAAAGACCTTCGGTGTATCATGAGTTTCT
TCACACAGCAGGCAGGAAGAGGGGCGCGAGAGCCGTTTGCCAGATTGGCC
CAGTTAGACAAAGACCTTCGGTGTATCATGAGTTTCTTCACACAGCAGGC
AGGAAGAGGGGCGCGAGAGCCGTTTGCCAGATTGGCCCAGCAGATGTCTC
TCTTGCTCAACCTGGAACGACCACAAAGCGCTGCGGATTACTGGGAAATC
GGGTCGCCCCTCCAGGCGCAGCTCACGGCAGATGAACAGATGTCTCTCTT
GCTCAACCTGGAACGACCACAAAGCGCTGCGGATTACTGGGAAATCGGGT
CGCCCCTCCAGGCGCAGCTCACGGCAGATGAAGTGGTGGCGGTGCTTCGC
CAAAGAGAGGACTTCACTCGAGAAGACCTGTCTTTGCTAGTTTTGCCACA
AGCGTGAGTGGTGGCGGTGCTTCGCCAAAGAGAGGACTTCACTCGAGAAG
ACCTGTCTTTGCTAGTTTTGCCACAAGCGTGA
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