mRNA_H-paniculata_contig15288.3108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15288.3108.1
Unique NamemRNA_H-paniculata_contig15288.3108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15288.3108.1 vs. uniprot
Match: D7FTC2_ECTSI (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC2_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 9.210e-48
Identity = 84/165 (50.91%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:   31 NNGAASGADWRGDDQV-KLSIPPISVY----RKCQETPEHGGAYSAFRQDTREVFYSAPIAILSDFHPCLLCFDALLRHFSDGTGSTQLGKEIYQ---IFPDDRYIPFFVRWESFDKDLGRYMPRGFVGSFTPRPFRSALAEYAIRAAREDPKFWGLVWTQLPET 501
            NNGAA+GA W G+DQ+ +++  P SV     R+       GG     R DTRE  Y API +L  FHPC+ CFDAL+ H  DGTG+ +L +       +   D ++ FFVRWE+ D+ LGR+ PRGF+GSFTP PFR ALAEYA++AA EDPKFWGL W ++P+T
Sbjct:  531 NNGAATGAGWGGEDQMDRVAAAPKSVAAFGRRQRGILAAGGGVDEDRRPDTRERCYDAPIEVLKSFHPCVRCFDALMGHLRDGTGAEELRRRTSSGSTVAAGDPHVAFFVRWETMDRGLGRFTPRGFMGSFTPSPFRPALAEYAVKAATEDPKFWGLGWARIPDT 695
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BLAST of mRNA_H-paniculata_contig15288.3108.1 vs. uniprot
Match: A0A6H5J567_9PHAE (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J567_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.050e-44
Identity = 85/189 (44.97%), Postives = 110/189 (58.20%), Query Frame = 1 
Query:   13 ITVARENNGAASGADWRGDDQVKLS-IPPI------SVYRKCQETPEH---------------GGAYSAFRQDTREVFYSAPIAILSDFHPCLLCFDALLRHFSDGTGSTQLGKEI---YQIFPDDRYIPFFVRWESFDKDLGRYMPRGFVGSFTPRPFRSALAEYAIRAAREDPKFWGLVWTQLPETR 504
            +  A  NNGAA+GA W G DQ + + + P+      S   +    P+                GGA    R DTRE  Y API +L  FHPC+ CFDAL+ H  DGTG+ +L +           D ++ FF+RWE+ D+ LGR++P GF GSFTP PFR ALAEYA++AA EDPKFWGL W Q+P+TR
Sbjct:  533 VAAAWTNNGAATGAGWGGGDQNQTTCVVPLCMSLDDSQMDRMAAAPKSVAAFGRKQRGILAAGGGADEDRRPDTREQCYGAPIEVLKSFHPCVRCFDALMGHLRDGTGAQELRRRTPWGSTAVAGDPHVAFFIRWETMDRRLGRFVPTGFRGSFTPSPFRPALAEYAVKAAIEDPKFWGLGWAQIPDTR 721
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15288.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTC2_ECTSI9.210e-4850.91AMMECR1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J567_9PHAE1.050e-4444.97AMMECR1 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15288contigH-paniculata_contig15288:488..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue9.5e-41
Seed eggNOG ortholog2880.D7FTC2
Preferred nameAMMECR1L
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.AMMECR1
EggNOG OGsCOG2078@1,KOG3274@2759
Ec32 ortholog descriptionAMMECR1 domain
Ec32 orthologEc-21_000800.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size507
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15288.3108.1prot_H-paniculata_contig15288.3108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15288 488..2324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.4176953-CDS-H-paniculata_contig15288:487..6561622929225.4176953-CDS-H-paniculata_contig15288:487..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 488..656 -
1691480777.1997035-CDS-H-paniculata_contig15288:487..6561691480777.1997035-CDS-H-paniculata_contig15288:487..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 488..656 -
1622929225.4302816-CDS-H-paniculata_contig15288:1228..13071622929225.4302816-CDS-H-paniculata_contig15288:1228..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 1229..1307 -
1691480777.2128801-CDS-H-paniculata_contig15288:1228..13071691480777.2128801-CDS-H-paniculata_contig15288:1228..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 1229..1307 -
1622929225.4409823-CDS-H-paniculata_contig15288:1573..16881622929225.4409823-CDS-H-paniculata_contig15288:1573..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 1574..1688 -
1691480777.2204907-CDS-H-paniculata_contig15288:1573..16881691480777.2204907-CDS-H-paniculata_contig15288:1573..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 1574..1688 -
1622929225.4596233-CDS-H-paniculata_contig15288:2180..23241622929225.4596233-CDS-H-paniculata_contig15288:2180..2324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 2181..2324 -
1691480777.227981-CDS-H-paniculata_contig15288:2180..23241691480777.227981-CDS-H-paniculata_contig15288:2180..2324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15288 2181..2324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15288.3108.1

>prot_H-paniculata_contig15288.3108.1 ID=prot_H-paniculata_contig15288.3108.1|Name=mRNA_H-paniculata_contig15288.3108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MRRNITVARENNGAASGADWRGDDQVKLSIPPISVYRKCQETPEHGGAYS
AFRQDTREVFYSAPIAILSDFHPCLLCFDALLRHFSDGTGSTQLGKEIYQ
IFPDDRYIPFFVRWESFDKDLGRYMPRGFVGSFTPRPFRSALAEYAIRAA
REDPKFWGLVWTQLPETR*
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mRNA from alignment at H-paniculata_contig15288:488..2324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15288.3108.1 ID=mRNA_H-paniculata_contig15288.3108.1|Name=mRNA_H-paniculata_contig15288.3108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1837bp|location=Sequence derived from alignment at H-paniculata_contig15288:488..2324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCGGAACATCACTGTGGCCAGGGAAAACAATGGAGCGGCCTCCGG
GGCTGACTGGAGGGGTGACGATCAGGTGAAATTAAGTATACCACCAATAT
CGGTATATCGGAAATGCCAGGAAACGCCGGAACACGGCGGAGCGGTGGGG
CAGCTGTCGGATGTAGCAAACAACGTAGCAGAGTAATTACCAGTTTCTTG
TAATTCACGCCTTCTCATAAAATGTGCTGAACAATTACGCACTTGATCTC
ACGAGGTTCTTCGGGCGTAAGTTTGGTGCAGGACACGATCAAATGTATTC
TGTCAAGATGATACCGGTGCGAGCACCACCGACAGTGTTCGAACCTCAAT
GGCTAACCACCCGCTCCACTCTTCGATGACAGTTTTGATTACTGATCCCT
CGTTCAATGGAAAAATTTCATTACGCAAAGAAAGAGCCACGTTACGCTCC
CTGTCCCTCTCGCCCTGGTCCCGACCTGGTCTTCCGCGGTAGATGGATGG
GGTGGCCAACGCCTTAACTTGCAAGCTCGTTGAAACCAACGAGAAACAAA
TTACTACGACATCGGGTAGCGCTGGTGGATCTGCCTGCGATGCTCCTGCC
CTTGGTGGTTGTTTTGGTGGCATGTCGACTAAACAGTACTCAGCCTTCCG
TCAGGATACGAGAGAAGTATTCTACTCGGCGCCGATCGCGATTTTGTCGG
ATTTTCATCCCTGTTTACTGTGCTTTGACGCTCTCTTGCGTCACTTTTCT
GGTGAGAATTTTGACGAAAAGAATGCATCCATTGTTCGTATTTTCGGCAC
GCATGAGTAAGTTGCAGATACCCTCTTTACAATTCTAAGTCGGCATGAGT
ACTGCAGCTTTCCAACTCTGGCATGGTTACAGAATTATCTTTGAAGGGAT
CAGAGAATACCCGCCGCGTCGTCTAGACGTATGGACTCTGGAGTAACAAA
ATATGGGTATTGTCTGTATAGAAACTGGTCTTCCTGCCACGTTCAATTTT
CTACAATAAATACACAGATGGGACAGGCAGCACGCAGCTTGGCAAGGAAA
TTTATCAGATATTTCCGGATGACCGCTACATACCTTTCTTCGTCAGGTAC
CACGGGCACTACGTCGCGGAACATAGGCTGCGTTGGTGATATTTGCTACC
CTATGTCTTTGCTCCGTCCTTCCCGAAGCCTTAAGCTCGATAACACGCCT
TTTGTGTCGCTTCATCCCGGAAGACCTATGTTGACTTCGGCGCTCAAGTG
TTAATGAATACAGCGCATAGTTGGTTGGAAGGTATGCGGCCAAGCACGTT
GCCGACGATACCATAAACCGTCAGTAGAGAAAACTACTGTAGTACTAGTT
AGTACCAAATTACCCTTGACGTCCTTTCATTAAATCTGTGGATCTGTCCG
CAAAATTGAGTCTAAATCTAATGAAACCAAAAGGCGCGTGGACGTTCACA
CTGCTGGCGGACACTCGAGAATACGTTGAGCTCACTCGAAATATCGATTT
GTCTCCTCACCGTTGGTATAAACCTTCCTTGCAACTAGCTGAGTATAAAT
TGTACATTCATGGATGCTATCCTCTGCGACGACAAGGGTAACAAAAGGAA
CTGGCCGTGTGTACCTCAATCATTCGGGTTCCCCTGACCTAACTGATTCG
TGCCTCCTTCGTCCTCAGGTGGGAATCTTTCGATAAGGATCTAGGGCGTT
ACATGCCGAGGGGCTTCGTTGGCAGTTTCACCCCCAGGCCCTTCCGATCA
GCTTTAGCGGAGTATGCGATTCGAGCAGCACGTGAGGATCCTAAGTTTTG
GGGGCTGGTCTGGACGCAACTTCCAGAAACCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15288:488..2324-

>mRNA_H-paniculata_contig15288.3108.1 ID=mRNA_H-paniculata_contig15288.3108.1|Name=mRNA_H-paniculata_contig15288.3108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig15288:488..2324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCGGAACATCACTGTGGCCAGGGAAAACAATGGAGCGGCCTCCGG
GGCTGACTGGAGGGGTGACGATCAGGTGAAATTAAGTATACCACCAATAT
CGGTATATCGGAAATGCCAGGAAACGCCGGAACACGGCGGAGCGATGCGG
CGGAACATCACTGTGGCCAGGGAAAACAATGGAGCGGCCTCCGGGGCTGA
CTGGAGGGGTGACGATCAGGTGAAATTAAGTATACCACCAATATCGGTAT
ATCGGAAATGCCAGGAAACGCCGGAACACGGCGGAGCGTACTCAGCCTTC
CGTCAGGATACGAGAGAAGTATTCTACTCGGCGCCGATCGCGATTTTGTC
GGATTTTCATCCCTGTTTACTGTGCTTTGACGCTCTCTTGCGTCACTTTT
CTGTACTCAGCCTTCCGTCAGGATACGAGAGAAGTATTCTACTCGGCGCC
GATCGCGATTTTGTCGGATTTTCATCCCTGTTTACTGTGCTTTGACGCTC
TCTTGCGTCACTTTTCTGATGGGACAGGCAGCACGCAGCTTGGCAAGGAA
ATTTATCAGATATTTCCGGATGACCGCTACATACCTTTCTTCGTCAGATG
GGACAGGCAGCACGCAGCTTGGCAAGGAAATTTATCAGATATTTCCGGAT
GACCGCTACATACCTTTCTTCGTCAGGTGGGAATCTTTCGATAAGGATCT
AGGGCGTTACATGCCGAGGGGCTTCGTTGGCAGTTTCACCCCCAGGCCCT
TCCGATCAGCTTTAGCGGAGTATGCGATTCGAGCAGCACGTGAGGATCCT
AAGTTTTGGGGGCTGGTCTGGACGCAACTTCCAGAAACCAGGTGAGTGGG
AATCTTTCGATAAGGATCTAGGGCGTTACATGCCGAGGGGCTTCGTTGGC
AGTTTCACCCCCAGGCCCTTCCGATCAGCTTTAGCGGAGTATGCGATTCG
AGCAGCACGTGAGGATCCTAAGTTTTGGGGGCTGGTCTGGACGCAACTTC
CAGAAACCAGGTGA
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