mRNA_H-paniculata_contig15277.3102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15277.3102.1
Unique NamemRNA_H-paniculata_contig15277.3102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15277.3102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15277contigH-paniculata_contig15277:2058..2526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929223.9000888-UTR-H-paniculata_contig15277:2057..21961622929223.9000888-UTR-H-paniculata_contig15277:2057..2196Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15277 2058..2196 +
1691480776.9207454-UTR-H-paniculata_contig15277:2057..21961691480776.9207454-UTR-H-paniculata_contig15277:2057..2196Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15277 2058..2196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929223.913592-CDS-H-paniculata_contig15277:2196..25261622929223.913592-CDS-H-paniculata_contig15277:2196..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15277 2197..2526 +
1691480776.928362-CDS-H-paniculata_contig15277:2196..25261691480776.928362-CDS-H-paniculata_contig15277:2196..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15277 2197..2526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15277.3102.1prot_H-paniculata_contig15277.3102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15277 2197..2526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15277.3102.1

>prot_H-paniculata_contig15277.3102.1 ID=prot_H-paniculata_contig15277.3102.1|Name=mRNA_H-paniculata_contig15277.3102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MKNIRRRKVQGYSGNSLLSAPSYFHFCCTVFVQTHFANVVNRLEQFVPQV
KRTENSKHMTCMLMTTAANLSGPDNSKYAYRHIHQSPLPLPLPISLLHKQ
TNNAHQPTKI
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mRNA from alignment at H-paniculata_contig15277:2058..2526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15277.3102.1 ID=mRNA_H-paniculata_contig15277.3102.1|Name=mRNA_H-paniculata_contig15277.3102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at H-paniculata_contig15277:2058..2526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTTGTACATATAAATTACAAAAAACACCTGGTTTGTGCAGCGTTTAAA
ACTAATGCTGAAGTGTTGTGTTTGCAAAACGATAGCAAGAGACAGTGAAA
GCATGAAAGCACAGAGAGAACAGCGATGAGGAGAAAAACATGAAAAATAT
ACGACGCAGAAAGGTTCAGGGTTACAGCGGGAATTCTCTGTTGTCAGCAC
CGAGCTACTTTCATTTCTGCTGTACTGTTTTCGTACAAACACACTTCGCC
AACGTAGTAAATAGGTTGGAACAATTTGTCCCACAAGTAAAACGAACGGA
AAACAGCAAACACATGACGTGTATGCTCATGACGACTGCTGCGAATCTTT
CCGGACCGGACAACAGCAAATACGCATATCGACATATCCACCAATCACCA
CTCCCCCTGCCCCTACCGATTAGCCTCCTTCACAAACAAACAAACAACGC
GCATCAACCCACCAAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig15277:2058..2526+

>mRNA_H-paniculata_contig15277.3102.1 ID=mRNA_H-paniculata_contig15277.3102.1|Name=mRNA_H-paniculata_contig15277.3102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig15277:2058..2526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATATACGACGCAGAAAGGTTCAGGGTTACAGCGGGAATTCTCT
GTTGTCAGCACCGAGCTACTTTCATTTCTGCTGTACTGTTTTCGTACAAA
CACACTTCGCCAACGTAGTAAATAGGTTGGAACAATTTGTCCCACAAGTA
AAACGAACGGAAAACAGCAAACACATGACGTGTATGCTCATGACGACTGC
TGCGAATCTTTCCGGACCGGACAACAGCAAATACGCATATCGACATATCC
ACCAATCACCACTCCCCCTGCCCCTACCGATTAGCCTCCTTCACAAACAA
ACAAACAACGCGCATCAACCCACCAAAATTATGAAAAATATACGACGCAG
AAAGGTTCAGGGTTACAGCGGGAATTCTCTGTTGTCAGCACCGAGCTACT
TTCATTTCTGCTGTACTGTTTTCGTACAAACACACTTCGCCAACGTAGTA
AATAGGTTGGAACAATTTGTCCCACAAGTAAAACGAACGGAAAACAGCAA
ACACATGACGTGTATGCTCATGACGACTGCTGCGAATCTTTCCGGACCGG
ACAACAGCAAATACGCATATCGACATATCCACCAATCACCACTCCCCCTG
CCCCTACCGATTAGCCTCCTTCACAAACAAACAAACAACGCGCATCAACC
CACCAAAATT
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